HEADER DNA 09-JUL-07 2JSM TITLE MONOMERIC HUMAN TELOMERE DNA TETRAPLEX WITH 3+1 STRAND FOLD TOPOLOGY, TITLE 2 TWO EDGEWISE LOOPS AND DOUBLE-CHAIN REVERSAL LOOP, NMR, 10 TITLE 3 STRUCTURES, FORM 1 NATURAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN TELOMERE DNA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS G-TETRAD; 3+1 STRAND FOLDING;EDGEWISE, DOUBLE-CHAIN REVERSAL LOOPS; KEYWDS 2 NATURAL FORM 1, 10 STRUCTURES, DNA EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR V.V.KURYAVYI,A.T.PHAN,K.N.LUU,D.J.PATEL REVDAT 3 16-MAR-22 2JSM 1 REMARK REVDAT 2 24-FEB-09 2JSM 1 VERSN REVDAT 1 08-JUL-08 2JSM 0 JRNL AUTH A.T.PHAN,V.KURYAVYI,K.N.LUU,D.J.PATEL JRNL TITL STRUCTURE OF TWO INTRAMOLECULAR G-QUADRUPLEXES FORMED BY JRNL TITL 2 NATURAL HUMAN TELOMERE SEQUENCES IN K+ SOLUTION JRNL REF NUCLEIC ACIDS RES. V. 35 6517 2007 JRNL REFN ISSN 0305-1048 JRNL PMID 17895279 JRNL DOI 10.1093/NAR/GKM706 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AFTER DEPOSITION, THE MOLECULES WERE REMARK 3 ENERGY MINIMIZED WITH THE ENERGY FUNCTION IMPLEMENTING REMARK 3 GEOMETRICAL VALUES IN EFFECT AT RCSB SINCE JULY 31 2007. AS A REMARK 3 RESULT, STRUCTURE STATISTICS FOR THIS ENTRY SLIGHTLY DEVIATES REMARK 3 FROM THE PUBLISHED ONE, AS FOLLOWS (CURRENT VS PUBLISHED): NOE REMARK 3 VIOLATIONS (0.3+-0.48) VS (0.00+-0.00) MAXIMUM VIOLATION (0.21+- REMARK 3 0.06) VS (0.00+-0.00) RMSD OF VIOLATIONS (0.03+-0.00) VS (0.03+- REMARK 3 0.00) BOND LENGTHS (0.004+-0.000) VS (0.004+-0.000) BOND ANGLES REMARK 3 (0.71+-0.01) VS (0.92+-0.01) IMPROPERS (0.38+-0.02) VS (0.36+- REMARK 3 0.02) PAIRWISE RMSD: ALL ATOMS (0.61+-0.15) VS (0.82+-0.22) ALL REMARK 3 ATOMS EXCEPT T6,T7,A8 (0.40+-0.11) VS (0.59+-0.15) REMARK 4 REMARK 4 2JSM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100238. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5-5.0 MM HUMAN TELOMERE DNA, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H-1H NOESY; 1H-1H TOCSY; 1H- REMARK 210 31P COSY; 1H-1H COSY; 1H-15N REMARK 210 JRHMQC; 1H-15N HMBC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.0, FELIX 2000, X-PLOR REMARK 210 3.851 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 143D RELATED DB: PDB REMARK 900 HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF NA CATIONS REMARK 900 RELATED ID: 186D RELATED DB: PDB REMARK 900 TETRAHYMENA TELOMERE DNA SOLUTION STRUCTURE REMARK 900 RELATED ID: 1K8P RELATED DB: PDB REMARK 900 HUMAN TELOMERE DNA CRYSTAL STRUCTURE IN THE PRESENCE OF K CATIONS REMARK 900 RELATED ID: 2AQY RELATED DB: PDB REMARK 900 3 REPEATS OF HUMAN TELOMERE DNA SOLUTION STRUCTURE REMARK 900 RELATED ID: 2JSK RELATED DB: PDB REMARK 900 HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS REMARK 900 16BRG FORM 1 REMARK 900 RELATED ID: 2JSL RELATED DB: PDB REMARK 900 HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS REMARK 900 NATURAL FORM 2 REMARK 900 RELATED ID: 2JSQ RELATED DB: PDB REMARK 900 HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS REMARK 900 FORM 2 15BRG DBREF 2JSM A 1 23 PDB 2JSM 2JSM 1 23 SEQRES 1 A 23 DT DA DG DG DG DT DT DA DG DG DG DT DT SEQRES 2 A 23 DA DG DG DG DT DT DA DG DG DG CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1