HEADER CHAPERONE 17-JUL-07 2JSX TITLE SOLUTION STRUCTURE OF THE E. COLI TAT PROOFREADING CHAPERONE PROTEIN TITLE 2 NAPD COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN NAPD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: NAPD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE70 KEYWDS NAPD, TAT, PROOFREADING, PROTEIN, CYTOPLASM, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.A.E.M.SPRONK,G.W.VUISTER,F.SARGENT REVDAT 5 14-JUN-23 2JSX 1 REMARK REVDAT 4 19-FEB-20 2JSX 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JSX 1 VERSN REVDAT 2 16-OCT-07 2JSX 1 JRNL REVDAT 1 21-AUG-07 2JSX 0 JRNL AUTH J.MAILLARD,C.A.E.M.SPRONK,G.BUCHANAN,V.LYALL,D.J.RICHARDSON, JRNL AUTH 2 T.PALMER,G.W.VUISTER,F.SARGENT JRNL TITL STRUCTURAL DIVERSITY IN TWIN-ARGININE SIGNAL PEPTIDE-BINDING JRNL TITL 2 PROTEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 15641 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17901208 JRNL DOI 10.1073/PNAS.0703967104 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XEASY, X-PLOR NIH, WHAT IF, YASARA REMARK 3 AUTHORS : C BARTELS ET AL. (XEASY), CD SCHWIETERS, JJ REMARK 3 KUSZEWSKI, N TJANDRA AND GM CLORE (X-PLOR NIH), G REMARK 3 VRIEND (WHAT IF), E. KRIEGER, YASARA BIOSCIENCES REMARK 3 (YASARA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISTANCE RESTRAINTS WERE DERIVED USING REMARK 3 ATNOSCANDID AUTOMATED NOE ASSIGNMENT PROCEDURES. RESTRAINTS WERE REMARK 3 LOOSENED WITH 0.2ANGSTROM UPPER BOUND CORRECTION AND USED TO REMARK 3 CALCULATE 100 STRUCTURES USING SIMULATED ANNEALING IN XPLOR-NIH, REMARK 3 FOLLOWED BY REFINEMENT IN EXPLICIT SOLVENT. REMARK 4 REMARK 4 2JSX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100249. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 NAPD, MM , MM , MM , 95% H2O/5% REMARK 210 D2O; 0.5 MM [U-100% 15N] NAPD, REMARK 210 MM , MM , MM , 95% H2O/5% D2O; REMARK 210 0.5 MM [U-10% 13C; U-100% 15N] REMARK 210 NAPD, MM , MM , MM , 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HBHA(CBCACO)NH; REMARK 210 3D HN(CA)HA; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HCCH-TOCSY; 2D 1H- REMARK 210 13C HSQC CONSTANT TIME REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ATNOSCANDID, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST RESTRAINT ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 82 -51.67 69.82 REMARK 500 2 THR A 3 -47.21 74.70 REMARK 500 2 GLU A 51 -74.14 -66.18 REMARK 500 2 GLU A 80 -164.62 61.31 REMARK 500 2 GLU A 84 -73.30 -65.18 REMARK 500 2 PRO A 87 36.98 -78.69 REMARK 500 2 HIS A 94 92.83 76.50 REMARK 500 3 ASN A 4 87.41 63.70 REMARK 500 3 GLN A 79 90.21 66.18 REMARK 500 3 GLU A 80 -22.10 -158.46 REMARK 500 3 GLU A 84 -151.32 61.78 REMARK 500 3 HIS A 91 115.17 73.88 REMARK 500 4 THR A 3 50.95 -148.47 REMARK 500 4 GLN A 82 -178.80 62.87 REMARK 500 4 GLU A 85 94.61 67.66 REMARK 500 5 THR A 3 80.13 51.09 REMARK 500 5 ALA A 35 -64.37 -101.03 REMARK 500 5 GLN A 79 46.55 -94.27 REMARK 500 5 GLN A 82 161.63 69.83 REMARK 500 5 HIS A 94 110.90 74.70 REMARK 500 6 LEU A 70 -60.36 -94.16 REMARK 500 6 VAL A 75 73.45 -105.84 REMARK 500 6 TYR A 76 78.96 160.75 REMARK 500 6 GLN A 82 -158.11 60.90 REMARK 500 7 GLU A 80 -51.41 -133.08 REMARK 500 8 ASN A 4 77.75 -100.84 REMARK 500 8 ALA A 35 -74.10 -101.09 REMARK 500 8 TYR A 76 -88.61 65.04 REMARK 500 8 HIS A 77 98.53 -161.32 REMARK 500 8 GLU A 80 96.88 67.28 REMARK 500 9 TYR A 76 -72.28 -150.88 REMARK 500 9 ARG A 88 -82.40 -80.71 REMARK 500 10 PRO A 30 97.88 -69.40 REMARK 500 10 GLU A 51 -73.08 -68.99 REMARK 500 11 HIS A 2 -63.20 -90.23 REMARK 500 11 THR A 3 151.12 59.16 REMARK 500 11 ASN A 4 132.49 74.34 REMARK 500 11 LEU A 70 -60.62 -102.74 REMARK 500 12 GLN A 79 93.22 -69.86 REMARK 500 12 GLN A 82 -77.94 67.33 REMARK 500 12 GLU A 84 107.32 66.37 REMARK 500 12 PRO A 87 -75.32 -72.15 REMARK 500 12 SER A 89 144.76 75.25 REMARK 500 13 HIS A 2 145.31 74.01 REMARK 500 13 TYR A 76 -47.16 -130.84 REMARK 500 13 HIS A 77 -168.37 65.48 REMARK 500 13 GLN A 79 0.08 -67.53 REMARK 500 13 GLN A 82 48.24 -87.83 REMARK 500 13 HIS A 91 79.57 66.18 REMARK 500 13 HIS A 93 -39.76 167.37 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15381 RELATED DB: BMRB DBREF 2JSX A 1 87 UNP P0A9I5 NAPD_ECOLI 1 87 SEQADV 2JSX ARG A 88 UNP P0A9I5 EXPRESSION TAG SEQADV 2JSX SER A 89 UNP P0A9I5 EXPRESSION TAG SEQADV 2JSX HIS A 90 UNP P0A9I5 EXPRESSION TAG SEQADV 2JSX HIS A 91 UNP P0A9I5 EXPRESSION TAG SEQADV 2JSX HIS A 92 UNP P0A9I5 EXPRESSION TAG SEQADV 2JSX HIS A 93 UNP P0A9I5 EXPRESSION TAG SEQADV 2JSX HIS A 94 UNP P0A9I5 EXPRESSION TAG SEQADV 2JSX HIS A 95 UNP P0A9I5 EXPRESSION TAG SEQRES 1 A 95 MET HIS THR ASN TRP GLN VAL CYS SER LEU VAL VAL GLN SEQRES 2 A 95 ALA LYS SER GLU ARG ILE SER ASP ILE SER THR GLN LEU SEQRES 3 A 95 ASN ALA PHE PRO GLY CYS GLU VAL ALA VAL SER ASP ALA SEQRES 4 A 95 PRO SER GLY GLN LEU ILE VAL VAL VAL GLU ALA GLU ASP SEQRES 5 A 95 SER GLU THR LEU ILE GLN THR ILE GLU SER VAL ARG ASN SEQRES 6 A 95 VAL GLU GLY VAL LEU ALA VAL SER LEU VAL TYR HIS GLN SEQRES 7 A 95 GLN GLU GLU GLN GLY GLU GLU THR PRO ARG SER HIS HIS SEQRES 8 A 95 HIS HIS HIS HIS HELIX 1 1 ARG A 18 ASN A 27 1 10 HELIX 2 2 ASP A 52 ARG A 64 1 13 SHEET 1 A 4 CYS A 32 ASP A 38 0 SHEET 2 A 4 GLN A 43 ALA A 50 -1 O ILE A 45 N VAL A 36 SHEET 3 A 4 GLN A 6 ALA A 14 -1 N VAL A 12 O LEU A 44 SHEET 4 A 4 VAL A 69 LEU A 74 -1 O ALA A 71 N GLN A 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1