HEADER SIGNALING PROTEIN 18-JUL-07 2JT4 TITLE SOLUTION STRUCTURE OF THE SLA1 SH3-3-UBIQUITIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSKELETON ASSEMBLY CONTROL PROTEIN SLA1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UBIQUITIN; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: SH3 DOMAIN SEQUENCE DATABASE RESIDUES 350-420; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SLA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET30; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 GENE: UBI1, RPL40A; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET3A KEYWDS ENDOCYTOSIS, MONOUBIQUITIN SIGNALING, UBIQUITIN-BINDING MOTIF, SH3, KEYWDS 2 UBIQUITIN, ACTIN-BINDING, CYTOPLASM, CYTOSKELETON, PHOSPHORYLATION, KEYWDS 3 SH3 DOMAIN, DNA DAMAGE, DNA REPAIR, NUCLEUS, UBL CONJUGATION, KEYWDS 4 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.HE,I.RADHAKRISHNAN REVDAT 3 16-MAR-22 2JT4 1 REMARK REVDAT 2 24-FEB-09 2JT4 1 VERSN REVDAT 1 25-SEP-07 2JT4 0 JRNL AUTH Y.HE,L.HICKE,I.RADHAKRISHNAN JRNL TITL STRUCTURAL BASIS FOR UBIQUITIN RECOGNITION BY SH3 DOMAINS JRNL REF J.MOL.BIOL. V. 373 190 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17765920 JRNL DOI 10.1016/J.JMB.2007.07.074 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR, ARIA, CNS REMARK 3 AUTHORS : VARIAN (VNMR), LINGE, O'DONOGHUE AND NILGES REMARK 3 (ARIA), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JT4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000100256. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-98% 13C; U-98% 15N] REMARK 210 SH3, 0.9 MM UBIQUITIN, 90% H2O/ REMARK 210 10% D2O; 0.9 MM [U-98% 13C; U-98% REMARK 210 15N] UBIQUITIN, 0.9 MM SH3, 90% REMARK 210 H2O/10% D2O; 0.9 MM [U-98% 13C; REMARK 210 U-98% 15N] SH3, 0.9 MM UBIQUITIN, REMARK 210 100% D2O; 0.9 MM [U-98% 13C; U- REMARK 210 98% 15N] UBIQUITIN, 0.9 MM SH3, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D C(CO)NH-TOCSY; 3D REMARK 210 HNCO; 3D H(CCO)NH-TOCSY; 3D 15N- REMARK 210 EDITED NOESY; 3D HCCH-COSY; 3D REMARK 210 HCCH-TOCSY; 3D 13C-EDITED NOESY; REMARK 210 3D 13C-FILTERED, 13C-EDITED REMARK 210 NOESY; 2D 15N,13C-DOUBLE-HALF- REMARK 210 FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, NMRVIEW, ARIA, CNS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT ENERGIES, RESTRAINT REMARK 210 VIOLATIONS AND RMS DEVIATIONS REMARK 210 FROM IDEAL COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 7 OD1 ASP A 36 1.56 REMARK 500 HZ3 LYS B 11 OE2 GLU B 34 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 65 -42.86 70.14 REMARK 500 1 ASP A 66 -71.73 -49.33 REMARK 500 2 SER A 5 -64.10 -100.10 REMARK 500 2 SER A 50 -62.47 -149.93 REMARK 500 2 ARG A 65 -23.53 73.75 REMARK 500 2 ASP A 66 138.06 71.92 REMARK 500 2 LYS A 67 29.24 -159.37 REMARK 500 2 VAL B 17 -157.98 -127.17 REMARK 500 2 LEU B 73 23.32 -78.01 REMARK 500 3 SER A 3 86.46 63.16 REMARK 500 3 SER A 39 -89.88 -106.30 REMARK 500 3 LYS A 40 -55.04 165.17 REMARK 500 3 ARG A 65 -71.33 -56.48 REMARK 500 3 ASP A 66 4.85 -151.48 REMARK 500 3 HIS A 69 -174.62 63.71 REMARK 500 3 LYS B 33 -72.73 -77.98 REMARK 500 4 SER A 3 -166.72 65.41 REMARK 500 4 GLU A 18 -33.97 -130.87 REMARK 500 4 ASP A 41 -63.44 -120.71 REMARK 500 4 ARG A 65 -64.24 -103.99 REMARK 500 4 LYS B 33 -60.92 -107.82 REMARK 500 4 ALA B 46 17.22 58.53 REMARK 500 4 ARG B 74 80.71 43.93 REMARK 500 5 LYS A 4 83.13 64.69 REMARK 500 5 LYS A 6 -167.30 62.74 REMARK 500 5 ASP A 49 -70.73 -62.84 REMARK 500 5 ARG A 65 -54.58 -163.91 REMARK 500 5 ASP A 66 -173.16 -170.47 REMARK 500 5 THR A 70 93.90 49.16 REMARK 500 5 LYS B 33 -63.05 -92.68 REMARK 500 5 ASN B 60 71.69 58.86 REMARK 500 5 LEU B 73 90.76 -67.48 REMARK 500 6 ALA A 2 -44.65 -136.10 REMARK 500 6 SER A 3 85.99 51.58 REMARK 500 6 LYS A 4 89.42 63.47 REMARK 500 6 LYS A 37 27.27 -141.71 REMARK 500 6 LYS A 40 -69.45 70.17 REMARK 500 6 ASP A 66 -87.99 65.84 REMARK 500 6 LYS A 67 -7.47 -147.22 REMARK 500 6 LYS A 68 115.99 69.45 REMARK 500 7 LYS A 4 -75.27 -142.20 REMARK 500 7 SER A 5 -49.56 -145.77 REMARK 500 7 GLU A 18 -41.28 -141.62 REMARK 500 7 ARG A 65 -82.15 -140.68 REMARK 500 7 ASN B 60 90.92 63.27 REMARK 500 8 ALA A 2 94.76 63.31 REMARK 500 8 LEU A 34 -78.27 -76.37 REMARK 500 8 LYS A 37 -62.72 -94.51 REMARK 500 8 VAL A 64 49.48 -82.47 REMARK 500 8 LYS A 68 94.33 63.21 REMARK 500 REMARK 500 THIS ENTRY HAS 132 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 650 THE AUTHORS STATE THAT THESE RECORDS REFLECT CONSENSUS REMARK 650 START AND END RESIDUES IN THE 20 NMR MODELS. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR REMARK 700 THE AUTHORS STATE THAT THESE RECORDS REFLECT CONSENSUS REMARK 700 START AND END RESIDUES IN THE 20 NMR MODELS. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UBQ RELATED DB: PDB REMARK 900 RELATED ID: 1Z9Z RELATED DB: PDB DBREF 2JT4 A 1 71 UNP P32790 SLA1_YEAST 350 420 DBREF 2JT4 B 1 76 UNP P61864 UBIQ_YEAST 1 76 SEQRES 1 A 71 MET ALA SER LYS SER LYS LYS ARG GLY ILE VAL GLN TYR SEQRES 2 A 71 ASP PHE MET ALA GLU SER GLN ASP GLU LEU THR ILE LYS SEQRES 3 A 71 SER GLY ASP LYS VAL TYR ILE LEU ASP ASP LYS LYS SER SEQRES 4 A 71 LYS ASP TRP TRP MET CYS GLN LEU VAL ASP SER GLY LYS SEQRES 5 A 71 SER GLY LEU VAL PRO ALA GLN PHE ILE GLU PRO VAL ARG SEQRES 6 A 71 ASP LYS LYS HIS THR GLU SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU SER SER ASP THR ILE ASP ASN VAL SEQRES 3 B 76 LYS SER LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HELIX 1 1 ILE B 23 LYS B 33 1 11 SHEET 1 A 5 SER A 53 PRO A 57 0 SHEET 2 A 5 TRP A 42 LEU A 47 -1 N TRP A 43 O VAL A 56 SHEET 3 A 5 LYS A 30 ASP A 35 -1 N TYR A 32 O GLN A 46 SHEET 4 A 5 LYS A 7 VAL A 11 -1 N LYS A 7 O ILE A 33 SHEET 5 A 5 ILE A 61 PRO A 63 -1 O GLU A 62 N ILE A 10 SHEET 1 B 5 THR B 12 GLU B 16 0 SHEET 2 B 5 GLN B 2 THR B 7 -1 N ILE B 3 O LEU B 15 SHEET 3 B 5 THR B 66 LEU B 71 1 O LEU B 67 N LYS B 6 SHEET 4 B 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 B 5 LYS B 48 LEU B 50 -1 O LYS B 48 N PHE B 45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1