HEADER METAL BINDING PROTEIN 31-JUL-07 2JTG TITLE SOLUTION STRUCTURE OF THE THAP-ZINC FINGER OF THAP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THAP DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THAP DOMAIN, RESIDUES 1-82; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: THAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-26 KEYWDS THAP, ZINC FINGER, CCCH, DNA-BINDING, METAL-BINDING, ZINC-FINGER, KEYWDS 2 METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.BESSIERE,S.CAMPAGNE,A.MILON,V.GERVAIS REVDAT 4 16-MAR-22 2JTG 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2JTG 1 VERSN REVDAT 2 29-APR-08 2JTG 1 JRNL REVDAT 1 11-DEC-07 2JTG 0 JRNL AUTH D.BESSIERE,C.LACROIX,S.CAMPAGNE,V.ECOCHARD,V.GUILLET, JRNL AUTH 2 L.MOUREY,F.LOPEZ,J.CZAPLICKI,P.DEMANGE,A.MILON,J.P.GIRARD, JRNL AUTH 3 V.GERVAIS JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF THE THAP ZINC FINGER OF JRNL TITL 2 THAP1, A LARGE C2CH DNA-BINDING MODULE LINKED TO RB/E2F JRNL TITL 3 PATHWAYS JRNL REF J.BIOL.CHEM. V. 283 4352 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18073205 JRNL DOI 10.1074/JBC.M707537200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XEASY, CNS REMARK 3 AUTHORS : BARTELS ET AL. (XEASY), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES,PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JTG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000100268. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM THAP DOMAIN, 90% H2O/10% REMARK 210 D2O; 1 MM [U-15N] THAP DOMAIN, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H COSY; 2D 1H-15N HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 79 H LEU A 82 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 3 137.30 -176.31 REMARK 500 1 ALA A 7 114.73 -39.26 REMARK 500 1 ARG A 13 112.78 -165.04 REMARK 500 1 PRO A 19 36.50 -74.56 REMARK 500 1 PRO A 30 -70.88 -93.75 REMARK 500 1 VAL A 40 -63.53 -100.55 REMARK 500 1 ASN A 44 78.00 -164.91 REMARK 500 1 PHE A 45 86.91 -28.30 REMARK 500 1 PRO A 47 -0.19 -54.02 REMARK 500 1 SER A 51 67.47 -58.18 REMARK 500 1 GLU A 66 39.36 -99.95 REMARK 500 1 CYS A 67 -178.74 -68.99 REMARK 500 1 ASN A 69 30.43 -151.59 REMARK 500 1 LEU A 72 55.47 -165.28 REMARK 500 1 LYS A 73 177.47 -52.34 REMARK 500 1 ALA A 76 137.64 -29.54 REMARK 500 1 VAL A 77 140.45 -172.70 REMARK 500 1 PRO A 78 34.16 -85.08 REMARK 500 1 THR A 79 -56.22 -5.41 REMARK 500 1 LEU A 82 89.61 -61.10 REMARK 500 1 LEU A 84 98.09 -44.88 REMARK 500 1 PRO A 86 85.54 -56.73 REMARK 500 2 GLN A 3 136.64 -174.41 REMARK 500 2 PRO A 19 26.76 -70.90 REMARK 500 2 PRO A 30 -70.76 -93.87 REMARK 500 2 VAL A 40 -67.56 -95.23 REMARK 500 2 ARG A 41 15.12 50.16 REMARK 500 2 ARG A 42 -91.79 -136.56 REMARK 500 2 ASN A 44 69.19 -69.75 REMARK 500 2 PHE A 45 84.12 -20.80 REMARK 500 2 PRO A 47 -3.12 -56.57 REMARK 500 2 SER A 51 66.36 -49.52 REMARK 500 2 PHE A 63 43.54 -96.99 REMARK 500 2 GLU A 66 69.08 -111.12 REMARK 500 2 ASN A 69 -78.77 -46.73 REMARK 500 2 LEU A 72 60.82 -170.90 REMARK 500 2 LYS A 73 -176.19 -67.10 REMARK 500 2 ALA A 76 139.15 -38.35 REMARK 500 2 VAL A 77 139.10 -172.96 REMARK 500 2 PRO A 78 34.25 -87.46 REMARK 500 2 THR A 79 -50.40 -12.00 REMARK 500 2 LEU A 82 77.69 -66.43 REMARK 500 2 LEU A 84 80.97 -67.11 REMARK 500 2 PRO A 86 81.59 -59.12 REMARK 500 3 ALA A 7 136.05 -39.41 REMARK 500 3 ARG A 13 114.31 -172.34 REMARK 500 3 PRO A 19 32.26 -75.43 REMARK 500 3 PRO A 30 -70.93 -93.99 REMARK 500 3 VAL A 40 -61.79 -95.01 REMARK 500 3 LYS A 43 -70.03 -45.32 REMARK 500 REMARK 500 THIS ENTRY HAS 418 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 88 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 5 SG REMARK 620 2 CYS A 10 SG 111.5 REMARK 620 3 CYS A 54 SG 111.7 108.4 REMARK 620 4 HIS A 57 NE2 108.0 110.0 107.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 88 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15289 RELATED DB: BMRB DBREF 2JTG A 1 81 UNP Q9NVV9 THAP1_HUMAN 1 81 SEQADV 2JTG LEU A 82 UNP Q9NVV9 EXPRESSION TAG SEQADV 2JTG GLU A 83 UNP Q9NVV9 EXPRESSION TAG SEQADV 2JTG LEU A 84 UNP Q9NVV9 EXPRESSION TAG SEQADV 2JTG VAL A 85 UNP Q9NVV9 EXPRESSION TAG SEQADV 2JTG PRO A 86 UNP Q9NVV9 EXPRESSION TAG SEQADV 2JTG ARG A 87 UNP Q9NVV9 EXPRESSION TAG SEQRES 1 A 87 MET VAL GLN SER CYS SER ALA TYR GLY CYS LYS ASN ARG SEQRES 2 A 87 TYR ASP LYS ASP LYS PRO VAL SER PHE HIS LYS PHE PRO SEQRES 3 A 87 LEU THR ARG PRO SER LEU CYS LYS GLU TRP GLU ALA ALA SEQRES 4 A 87 VAL ARG ARG LYS ASN PHE LYS PRO THR LYS TYR SER SER SEQRES 5 A 87 ILE CYS SER GLU HIS PHE THR PRO ASP CYS PHE LYS ARG SEQRES 6 A 87 GLU CYS ASN ASN LYS LEU LEU LYS GLU ASN ALA VAL PRO SEQRES 7 A 87 THR ILE PHE LEU GLU LEU VAL PRO ARG HET ZN A 88 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 LEU A 32 ARG A 41 1 10 HELIX 2 2 GLU A 56 PHE A 58 5 3 HELIX 3 3 THR A 59 LYS A 64 5 6 HELIX 4 4 PRO A 78 LEU A 82 5 5 SHEET 1 A 2 PHE A 22 LYS A 24 0 SHEET 2 A 2 SER A 52 CYS A 54 -1 O ILE A 53 N HIS A 23 LINK SG CYS A 5 ZN ZN A 88 1555 1555 2.31 LINK SG CYS A 10 ZN ZN A 88 1555 1555 2.30 LINK SG CYS A 54 ZN ZN A 88 1555 1555 2.30 LINK NE2 HIS A 57 ZN ZN A 88 1555 1555 2.00 SITE 1 AC1 3 CYS A 5 ALA A 7 CYS A 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1