HEADER TRANSFERASE 06-AUG-07 2JTQ TITLE RHODANESE FROM E.COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHAGE SHOCK PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 GENE: PSPE; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS SOLUTION STRUCTURE RHODANESE, STRESS RESPONSE, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR C.JIN,H.LI REVDAT 3 16-MAR-22 2JTQ 1 REMARK REVDAT 2 24-FEB-09 2JTQ 1 VERSN REVDAT 1 17-JUN-08 2JTQ 0 JRNL AUTH H.LI,F.YANG,X.KANG,B.XIA,C.JIN JRNL TITL SOLUTION STRUCTURES AND BACKBONE DYNAMICS OF ESCHERICHIA JRNL TITL 2 COLI RHODANESE PSPE IN ITS SULFUR-FREE AND JRNL TITL 3 PERSULFIDE-INTERMEDIATE FORMS: IMPLICATIONS FOR THE JRNL TITL 4 CATALYTIC MECHANISM OF RHODANESE. JRNL REF BIOCHEMISTRY V. 47 4377 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18355042 JRNL DOI 10.1021/BI800039N REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JTQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000100278. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 0.03 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] RHODANESE, REMARK 210 20 MM TRIS, 40 MM DTT, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 2D 1H-15N HSQC; 3D REMARK 210 CBCA(CO)NH; 3D C(CO)NH; 3D HNCO; REMARK 210 3D HNCA; 3D HNCACB; 3D HBHA(CO) REMARK 210 NH; 3D HN(CO)CA; 3D H(CCO)NH; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N TOCSY; 3D REMARK 210 HCCH-COSY; 3D HCACO REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0, NMRPIPE, NMRVIEW, REMARK 210 MOLMOL, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 1 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 3 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 7 ARG A 8 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 7 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 11 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 17 ARG A 8 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 19 108.30 -58.03 REMARK 500 1 CYS A 48 -151.71 -147.83 REMARK 500 2 GLN A 14 22.10 -78.64 REMARK 500 2 GLN A 15 -38.16 -135.64 REMARK 500 2 GLN A 19 43.74 -77.34 REMARK 500 2 GLU A 31 -50.10 -121.50 REMARK 500 3 CYS A 48 -157.78 -153.13 REMARK 500 3 ALA A 50 19.56 -140.47 REMARK 500 4 GLN A 19 48.05 -74.47 REMARK 500 4 GLU A 31 -51.05 -127.45 REMARK 500 4 LYS A 40 -28.00 58.38 REMARK 500 4 HIS A 68 25.74 -141.07 REMARK 500 5 CYS A 48 -156.78 -148.26 REMARK 500 6 GLU A 31 -50.98 -124.88 REMARK 500 7 GLN A 14 1.29 -68.23 REMARK 500 7 CYS A 48 -157.73 -150.88 REMARK 500 7 HIS A 68 36.96 -141.24 REMARK 500 8 GLU A 31 -51.60 -123.17 REMARK 500 8 VAL A 37 59.50 -142.94 REMARK 500 8 LYS A 40 -17.25 57.82 REMARK 500 8 CYS A 48 -145.18 -150.65 REMARK 500 8 ALA A 50 -23.95 -143.53 REMARK 500 9 GLN A 15 -41.34 -130.23 REMARK 500 9 CYS A 48 -156.44 -152.43 REMARK 500 10 GLN A 14 0.63 -69.66 REMARK 500 10 GLN A 19 48.23 -76.04 REMARK 500 10 LYS A 40 -15.37 59.53 REMARK 500 10 CYS A 48 -147.10 -147.77 REMARK 500 10 ALA A 50 -35.63 -147.17 REMARK 500 11 CYS A 48 -141.91 -148.84 REMARK 500 11 ALA A 50 -9.18 -149.88 REMARK 500 12 GLU A 31 -50.14 -124.95 REMARK 500 12 CYS A 48 -162.48 -162.64 REMARK 500 12 ALA A 50 24.17 49.68 REMARK 500 13 GLU A 16 146.51 -171.41 REMARK 500 13 VAL A 37 52.05 -141.02 REMARK 500 13 CYS A 48 -155.75 -150.47 REMARK 500 14 ALA A 21 -175.37 59.88 REMARK 500 14 GLU A 31 -48.46 -131.21 REMARK 500 14 CYS A 48 -159.42 -162.94 REMARK 500 15 CYS A 48 -154.21 -143.74 REMARK 500 15 ALA A 50 -39.05 -145.78 REMARK 500 16 CYS A 48 -151.25 -148.80 REMARK 500 16 ALA A 50 -9.64 -146.43 REMARK 500 17 CYS A 48 -144.38 -134.53 REMARK 500 17 ALA A 50 -26.21 -144.46 REMARK 500 18 VAL A 37 40.82 -142.59 REMARK 500 18 LYS A 40 -11.33 62.52 REMARK 500 18 CYS A 48 -141.95 -147.13 REMARK 500 18 ALA A 50 -41.15 -143.76 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 66 0.07 SIDE CHAIN REMARK 500 4 ARG A 8 0.10 SIDE CHAIN REMARK 500 4 TYR A 66 0.08 SIDE CHAIN REMARK 500 5 TYR A 66 0.08 SIDE CHAIN REMARK 500 8 TYR A 66 0.09 SIDE CHAIN REMARK 500 10 TYR A 66 0.09 SIDE CHAIN REMARK 500 14 ARG A 8 0.10 SIDE CHAIN REMARK 500 14 TYR A 66 0.07 SIDE CHAIN REMARK 500 15 TYR A 66 0.09 SIDE CHAIN REMARK 500 17 TYR A 66 0.08 SIDE CHAIN REMARK 500 18 ARG A 8 0.13 SIDE CHAIN REMARK 500 19 TYR A 66 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JTR RELATED DB: PDB REMARK 900 RELATED ID: 2JTS RELATED DB: PDB DBREF 2JTQ A 1 85 UNP P23857 PSPE_ECOLI 20 104 SEQRES 1 A 85 ALA GLU HIS TRP ILE ASP VAL ARG VAL PRO GLU GLN TYR SEQRES 2 A 85 GLN GLN GLU HIS VAL GLN GLY ALA ILE ASN ILE PRO LEU SEQRES 3 A 85 LYS GLU VAL LYS GLU ARG ILE ALA THR ALA VAL PRO ASP SEQRES 4 A 85 LYS ASN ASP THR VAL LYS VAL TYR CYS ASN ALA GLY ARG SEQRES 5 A 85 GLN SER GLY GLN ALA LYS GLU ILE LEU SER GLU MET GLY SEQRES 6 A 85 TYR THR HIS VAL GLU ASN ALA GLY GLY LEU LYS ASP ILE SEQRES 7 A 85 ALA MET PRO LYS VAL LYS GLY HELIX 1 1 VAL A 9 GLN A 14 1 6 HELIX 2 2 PRO A 25 VAL A 37 1 13 HELIX 3 3 GLY A 51 MET A 64 1 14 SHEET 1 A 4 ILE A 22 ASN A 23 0 SHEET 2 A 4 GLU A 2 ASP A 6 1 N ASP A 6 O ILE A 22 SHEET 3 A 4 THR A 43 CYS A 48 1 O LYS A 45 N HIS A 3 SHEET 4 A 4 VAL A 69 GLY A 74 1 O ALA A 72 N VAL A 46 SHEET 1 B 2 GLU A 16 VAL A 18 0 SHEET 2 B 2 LYS A 82 LYS A 84 -1 O VAL A 83 N HIS A 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1