HEADER STRUCTURAL PROTEIN 09-AUG-07 2JTY TITLE SELF-COMPLEMENTED VARIANT OF FIMA, THE MAIN SUBUNIT OF TYPE 1 PILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE-1 FIMBRIAL PROTEIN, A CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FUSION PROTEIN OF TYPE-1 FIMBRIAL PROTEIN AND TYPE-1 COMPND 5 FIMBRIAL PROTEIN; COMPND 6 SYNONYM: TYPE-1A PILIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: FIMA, PILA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-11A KEYWDS PROTEIN/PILI/FIM, CELL PROJECTION, FIMBRIUM, CHIMERA, CHAPERONE, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.ERILOV,G.WIDER,R.GLOCKSHUBER,C.PUORGER,M.VETSCH REVDAT 6 14-JUN-23 2JTY 1 REMARK REVDAT 5 19-FEB-20 2JTY 1 REMARK REVDAT 4 21-SEP-11 2JTY 1 JRNL REVDAT 3 17-AUG-11 2JTY 1 JRNL VERSN REVDAT 2 24-FEB-09 2JTY 1 VERSN REVDAT 1 12-AUG-08 2JTY 0 JRNL AUTH C.PUORGER,M.VETSCH,G.WIDER,R.GLOCKSHUBER JRNL TITL STRUCTURE, FOLDING AND STABILITY OF FIMA, THE MAIN JRNL TITL 2 STRUCTURAL SUBUNIT OF TYPE 1 PILI FROM UROPATHOGENIC JRNL TITL 3 ESCHERICHIA COLI STRAINS. JRNL REF J.MOL.BIOL. V. 412 520 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21816158 JRNL DOI 10.1016/J.JMB.2011.07.044 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, OPAL REMARK 3 AUTHORS : GUNTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TORSION ANGLE DYNAMICS USING DYANA AND REMARK 3 MOLECULAR DYNAMICS USING OPAL REMARK 4 REMARK 4 2JTY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000100286. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 18 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.7 MM [U-98% 13C; U-98% 15N] REMARK 210 FIMA, 50 M H2O, 5 M D2O, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-15N TOCSY; 3D REMARK 210 HCCH-TOCSY; CBHD; 3D 1H-13C REMARK 210 NOESY ARO; 2D 1H-13C HSQC ARO REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 105 HG1 THR A 107 1.55 REMARK 500 HH TYR A 137 O ALA A 148 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 VAL A 71 CG1 - CB - CG2 ANGL. DEV. = 13.7 DEGREES REMARK 500 4 VAL A 71 CG1 - CB - CG2 ANGL. DEV. = 12.4 DEGREES REMARK 500 5 VAL A 71 CG1 - CB - CG2 ANGL. DEV. = 9.8 DEGREES REMARK 500 5 VAL A 156 CG1 - CB - CG2 ANGL. DEV. = 13.9 DEGREES REMARK 500 6 CYS A 21 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 8 VAL A 71 CG1 - CB - CG2 ANGL. DEV. = 13.5 DEGREES REMARK 500 9 VAL A 71 CG1 - CB - CG2 ANGL. DEV. = 11.8 DEGREES REMARK 500 9 TYR A 137 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 10 VAL A 71 CG1 - CB - CG2 ANGL. DEV. = 11.1 DEGREES REMARK 500 10 LEU A 124 CB - CG - CD1 ANGL. DEV. = 10.5 DEGREES REMARK 500 11 CYS A 21 CA - CB - SG ANGL. DEV. = 10.2 DEGREES REMARK 500 11 VAL A 71 CG1 - CB - CG2 ANGL. DEV. = 13.4 DEGREES REMARK 500 11 VAL A 156 CG1 - CB - CG2 ANGL. DEV. = 12.3 DEGREES REMARK 500 11 TYR A 158 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 15 HIS A 11 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 15 LEU A 124 CB - CG - CD1 ANGL. DEV. = 11.5 DEGREES REMARK 500 17 VAL A 71 CG1 - CB - CG2 ANGL. DEV. = 11.8 DEGREES REMARK 500 17 LEU A 104 CB - CG - CD1 ANGL. DEV. = 10.6 DEGREES REMARK 500 19 VAL A 71 CG1 - CB - CG2 ANGL. DEV. = 12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 5 147.17 70.21 REMARK 500 1 VAL A 10 71.02 45.43 REMARK 500 1 GLU A 15 -154.60 -129.94 REMARK 500 1 VAL A 16 70.59 -65.59 REMARK 500 1 VAL A 23 113.40 49.54 REMARK 500 1 SER A 27 -36.69 -144.63 REMARK 500 1 SER A 49 -177.69 -66.70 REMARK 500 1 ALA A 51 164.83 74.07 REMARK 500 1 ASP A 60 57.75 32.98 REMARK 500 1 HIS A 82 50.47 -146.91 REMARK 500 1 LEU A 88 -156.87 55.19 REMARK 500 1 SER A 90 -143.99 67.58 REMARK 500 1 SER A 91 86.07 -46.15 REMARK 500 1 ALA A 92 7.77 -65.50 REMARK 500 1 THR A 117 91.48 -67.16 REMARK 500 1 SER A 120 112.89 -32.36 REMARK 500 1 ALA A 142 93.65 -62.54 REMARK 500 1 ALA A 166 98.99 46.71 REMARK 500 1 ASN A 183 31.23 -74.77 REMARK 500 2 THR A 3 -157.54 46.95 REMARK 500 2 THR A 4 82.74 24.24 REMARK 500 2 ASN A 6 84.19 24.52 REMARK 500 2 THR A 9 100.37 45.54 REMARK 500 2 GLU A 15 -153.65 -140.62 REMARK 500 2 VAL A 17 49.59 37.18 REMARK 500 2 ALA A 19 137.77 -173.34 REMARK 500 2 ASP A 29 30.63 -145.48 REMARK 500 2 ALA A 43 -0.27 -142.31 REMARK 500 2 ALA A 51 136.71 154.19 REMARK 500 2 CYS A 61 85.62 -69.89 REMARK 500 2 ALA A 69 85.94 -153.56 REMARK 500 2 HIS A 82 43.59 -86.71 REMARK 500 2 LEU A 88 -169.21 51.54 REMARK 500 2 SER A 90 -170.06 59.66 REMARK 500 2 SER A 91 71.48 24.76 REMARK 500 2 THR A 117 99.74 -55.96 REMARK 500 2 SER A 119 -160.74 -115.51 REMARK 500 2 ALA A 142 94.59 -60.50 REMARK 500 2 ASN A 183 24.59 -74.03 REMARK 500 3 VAL A 10 62.71 32.92 REMARK 500 3 GLU A 15 163.49 71.20 REMARK 500 3 VAL A 16 -28.51 54.82 REMARK 500 3 VAL A 17 33.44 38.30 REMARK 500 3 VAL A 23 124.45 54.81 REMARK 500 3 SER A 27 -9.85 -141.73 REMARK 500 3 SER A 49 -169.91 -75.57 REMARK 500 3 SER A 50 -92.38 -45.11 REMARK 500 3 ALA A 51 75.10 153.98 REMARK 500 3 ASN A 55 -169.95 36.92 REMARK 500 3 ASP A 60 54.25 30.18 REMARK 500 REMARK 500 THIS ENTRY HAS 418 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 152 THR A 153 1 147.67 REMARK 500 GLY A 46 ALA A 47 2 148.71 REMARK 500 ALA A 152 THR A 153 2 147.54 REMARK 500 THR A 9 VAL A 10 4 147.70 REMARK 500 ALA A 69 ALA A 70 4 144.67 REMARK 500 ALA A 152 THR A 153 4 149.17 REMARK 500 ALA A 69 ALA A 70 6 147.42 REMARK 500 THR A 9 VAL A 10 7 145.31 REMARK 500 SER A 90 SER A 91 7 141.22 REMARK 500 SER A 95 ALA A 96 7 148.33 REMARK 500 SER A 119 SER A 120 7 147.03 REMARK 500 GLN A 159 GLY A 160 7 126.66 REMARK 500 PHE A 12 LYS A 13 8 -140.23 REMARK 500 SER A 90 SER A 91 8 -149.44 REMARK 500 ALA A 69 ALA A 70 9 149.57 REMARK 500 SER A 95 ALA A 96 10 148.18 REMARK 500 GLY A 163 GLY A 164 12 -148.29 REMARK 500 GLY A 8 THR A 9 14 146.95 REMARK 500 THR A 9 VAL A 10 14 146.36 REMARK 500 VAL A 10 HIS A 11 15 -146.55 REMARK 500 ALA A 69 ALA A 70 15 142.39 REMARK 500 SER A 119 SER A 120 16 147.89 REMARK 500 ALA A 69 ALA A 70 17 145.88 REMARK 500 ALA A 1 ALA A 2 18 -145.72 REMARK 500 THR A 9 VAL A 10 19 -149.50 REMARK 500 VAL A 10 HIS A 11 20 147.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 106 0.08 SIDE CHAIN REMARK 500 8 ARG A 106 0.14 SIDE CHAIN REMARK 500 9 ARG A 38 0.10 SIDE CHAIN REMARK 500 12 ARG A 38 0.15 SIDE CHAIN REMARK 500 18 ARG A 38 0.09 SIDE CHAIN REMARK 500 18 PHE A 154 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 8 VAL A 17 -10.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15423 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT THIS PROTEIN IS DESIGNED TO MIMIC THE STATE REMARK 999 OF FIMA SUBUNIT IN A CHAIN. THIS PROTEIN (FIMA) POLYMERIZES INTO A REMARK 999 CHAIN IN E.COLI VIA A DOMAIN SWAPPING MECHANISM. EACH SUBUNIT REMARK 999 DONATES ITS N-TERMINAL RESIDUES TO THE PRECEDING SUBUNIT TO REMARK 999 COMPLEMENT ITS FOLD, WHICH OTHERWISE LACKS ONE BETA-STRAND. DBREF 2JTY A 1 159 UNP P04128 FIMA1_ECOLI 24 182 DBREF 2JTY A 160 165 PDB 2JTY 2JTY 160 165 DBREF 2JTY A 166 184 UNP P04128 FIMA1_ECOLI 24 42 SEQRES 1 A 184 ALA ALA THR THR VAL ASN GLY GLY THR VAL HIS PHE LYS SEQRES 2 A 184 GLY GLU VAL VAL ASN ALA ALA CYS ALA VAL ASP ALA GLY SEQRES 3 A 184 SER VAL ASP GLN THR VAL GLN LEU GLY GLN VAL ARG THR SEQRES 4 A 184 ALA SER LEU ALA GLN GLU GLY ALA THR SER SER ALA VAL SEQRES 5 A 184 GLY PHE ASN ILE GLN LEU ASN ASP CYS ASP THR ASN VAL SEQRES 6 A 184 ALA SER LYS ALA ALA VAL ALA PHE LEU GLY THR ALA ILE SEQRES 7 A 184 ASP ALA GLY HIS THR ASN VAL LEU ALA LEU GLN SER SER SEQRES 8 A 184 ALA ALA GLY SER ALA THR ASN VAL GLY VAL GLN ILE LEU SEQRES 9 A 184 ASP ARG THR GLY ALA ALA LEU THR LEU ASP GLY ALA THR SEQRES 10 A 184 PHE SER SER GLU THR THR LEU ASN ASN GLY THR ASN THR SEQRES 11 A 184 ILE PRO PHE GLN ALA ARG TYR PHE ALA THR GLY ALA ALA SEQRES 12 A 184 THR PRO GLY ALA ALA ASN ALA ASP ALA THR PHE LYS VAL SEQRES 13 A 184 GLN TYR GLN GLY GLY GLY GLY GLY GLY ALA ALA THR THR SEQRES 14 A 184 VAL ASN GLY GLY THR VAL HIS PHE LYS GLY GLU VAL VAL SEQRES 15 A 184 ASN ALA HELIX 1 1 ASP A 24 VAL A 28 1 5 HELIX 2 2 ALA A 40 LEU A 42 5 3 HELIX 3 3 ASP A 79 THR A 83 5 5 SHEET 1 A 5 ASP A 29 ARG A 38 0 SHEET 2 A 5 ALA A 167 VAL A 182 1 O VAL A 182 N VAL A 37 SHEET 3 A 5 ALA A 150 GLN A 159 -1 N ALA A 150 O PHE A 177 SHEET 4 A 5 LYS A 68 LEU A 74 -1 N ALA A 72 O LYS A 155 SHEET 5 A 5 THR A 122 THR A 123 -1 O THR A 122 N ALA A 69 SHEET 1 B 3 GLU A 45 THR A 48 0 SHEET 2 B 3 GLY A 127 THR A 140 -1 O ALA A 139 N ALA A 47 SHEET 3 B 3 VAL A 52 CYS A 61 -1 N LEU A 58 O ASN A 129 SHEET 1 C 3 GLU A 45 THR A 48 0 SHEET 2 C 3 GLY A 127 THR A 140 -1 O ALA A 139 N ALA A 47 SHEET 3 C 3 VAL A 99 ASP A 105 -1 N LEU A 104 O GLN A 134 SSBOND 1 CYS A 21 CYS A 61 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1