data_2JU8 # _entry.id 2JU8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JU8 pdb_00002ju8 10.2210/pdb2ju8/pdb RCSB RCSB100296 ? ? WWPDB D_1000100296 ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.content_type 4098 BMRB 'resonance assignments and secondary structure' unspecified 15429 BMRB 'Solution-State Structures of apo-LFABP (Liver Fatty Acid-Binding Protein)' unspecified 2ju3 PDB 'Solution-State Structures of apo-LFABP (Liver Fatty Acid-Binding Protein)' unspecified 15433 BMRB 'Solution-State Structures of Oleate-Liganded LFABP, Protein Only' unspecified 2ju7 PDB 'Solution-State Structures of Oleate-Liganded LFABP, Protein Only' unspecified 15434 BMRB . unspecified # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2JU8 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-08-15 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'He, Y.' 1 'Yang, X.' 2 'Wang, H.' 3 'Estephan, R.' 4 'Francis, F.' 5 'Kodukula, S.' 6 'Storch, J.' 7 'Stark, R.E.' 8 # _citation.id primary _citation.title 'Solution-State Molecular Structure of Apo and Oleate-Liganded Liver Fatty Acid-Binding Protein' _citation.journal_abbrev Biochemistry _citation.journal_volume 46 _citation.page_first 12543 _citation.page_last 12556 _citation.year 2007 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17927211 _citation.pdbx_database_id_DOI 10.1021/bi701092r # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'He, Y.' 1 ? primary 'Yang, X.' 2 ? primary 'Wang, H.' 3 ? primary 'Estephan, R.' 4 ? primary 'Francis, F.' 5 ? primary 'Kodukula, S.' 6 ? primary 'Storch, J.' 7 ? primary 'Stark, R.E.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Fatty acid-binding protein, liver' 14293.544 1 ? ? ? ? 2 non-polymer syn 'OLEIC ACID' 282.461 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'L-FABP, Z-protein, Squalene- and sterol-carrier protein, SCP, p14' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNFSGKYQVQSQENFEPFMKAMGLPEDLIQKGKDIKGVSEIVHEGKKVKLTITYGSKVIHNEFTLGEECELETMTGEKVK AVVKMEGDNKMVTTFKGIKSVTEFNGDTITNTMTLGDIVYKRVSKRI ; _entity_poly.pdbx_seq_one_letter_code_can ;MNFSGKYQVQSQENFEPFMKAMGLPEDLIQKGKDIKGVSEIVHEGKKVKLTITYGSKVIHNEFTLGEECELETMTGEKVK AVVKMEGDNKMVTTFKGIKSVTEFNGDTITNTMTLGDIVYKRVSKRI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 PHE n 1 4 SER n 1 5 GLY n 1 6 LYS n 1 7 TYR n 1 8 GLN n 1 9 VAL n 1 10 GLN n 1 11 SER n 1 12 GLN n 1 13 GLU n 1 14 ASN n 1 15 PHE n 1 16 GLU n 1 17 PRO n 1 18 PHE n 1 19 MET n 1 20 LYS n 1 21 ALA n 1 22 MET n 1 23 GLY n 1 24 LEU n 1 25 PRO n 1 26 GLU n 1 27 ASP n 1 28 LEU n 1 29 ILE n 1 30 GLN n 1 31 LYS n 1 32 GLY n 1 33 LYS n 1 34 ASP n 1 35 ILE n 1 36 LYS n 1 37 GLY n 1 38 VAL n 1 39 SER n 1 40 GLU n 1 41 ILE n 1 42 VAL n 1 43 HIS n 1 44 GLU n 1 45 GLY n 1 46 LYS n 1 47 LYS n 1 48 VAL n 1 49 LYS n 1 50 LEU n 1 51 THR n 1 52 ILE n 1 53 THR n 1 54 TYR n 1 55 GLY n 1 56 SER n 1 57 LYS n 1 58 VAL n 1 59 ILE n 1 60 HIS n 1 61 ASN n 1 62 GLU n 1 63 PHE n 1 64 THR n 1 65 LEU n 1 66 GLY n 1 67 GLU n 1 68 GLU n 1 69 CYS n 1 70 GLU n 1 71 LEU n 1 72 GLU n 1 73 THR n 1 74 MET n 1 75 THR n 1 76 GLY n 1 77 GLU n 1 78 LYS n 1 79 VAL n 1 80 LYS n 1 81 ALA n 1 82 VAL n 1 83 VAL n 1 84 LYS n 1 85 MET n 1 86 GLU n 1 87 GLY n 1 88 ASP n 1 89 ASN n 1 90 LYS n 1 91 MET n 1 92 VAL n 1 93 THR n 1 94 THR n 1 95 PHE n 1 96 LYS n 1 97 GLY n 1 98 ILE n 1 99 LYS n 1 100 SER n 1 101 VAL n 1 102 THR n 1 103 GLU n 1 104 PHE n 1 105 ASN n 1 106 GLY n 1 107 ASP n 1 108 THR n 1 109 ILE n 1 110 THR n 1 111 ASN n 1 112 THR n 1 113 MET n 1 114 THR n 1 115 LEU n 1 116 GLY n 1 117 ASP n 1 118 ILE n 1 119 VAL n 1 120 TYR n 1 121 LYS n 1 122 ARG n 1 123 VAL n 1 124 SER n 1 125 LYS n 1 126 ARG n 1 127 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus Rattus _entity_src_gen.pdbx_gene_src_gene Fabp1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant pLys _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector pET-11a _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FABPL_RAT _struct_ref.pdbx_db_accession P02692 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNFSGKYQVQSQENFEPFMKAMGLPEDLIQKGKDIKGVSEIVHEGKKVKLTITYGSKVIHNEFTLGEECELETMTGEKVK AVVKMEGDNKMVTTFKGIKSVTEFNGDTITNTMTLGDIVYKRVSKRI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JU8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 127 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02692 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 127 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 127 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OLA non-polymer . 'OLEIC ACID' ? 'C18 H34 O2' 282.461 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 2 1 1 '3D 13C-filtered NOE' 1 2 2 '3D 13C-filtered NOE' 1 3 3 '3D 13C-filtered NOE' 1 4 2 '3D 13C-filtered NOE' 1 5 2 '2D 1H-13C HSQC' 1 6 2 '2D 1H-13C HMQC-TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.15 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.7-1.0 mM [U-99% 13C; U-99% 15N] LFABP, 50 mM sodium phosphate, 0.02 % sodium azide, 5 uM EDTA, 100 % D2O, 3 eq oleate, 100 mM sodium chloride, 100% D2O ; 1 '100% D2O' ;0.7-1.0 mM [U-99% 15N] LFABP, 50 mM sodium phosphate, 0.02 % sodium azide, 5 uM EDTA, 98 % D2O, 3 eq [U-99% 13C] oleate, 100 mM sodium chloride, 95% H2O/5% D2O ; 2 '95% H2O/5% D2O' ;0.7-1.0 mM [U-99% 13C; U-99% 15N] LFABP, 50 mM sodium phosphate, 0.02 % sodium azide, 5 uM EDTA, 5 % D2O, 3 eq oleate, 100 mM sodium chloride, 95% H2O/5% D2O ; 3 '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 800 Bruker AVANCE 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2JU8 _pdbx_nmr_refine.method 'simulated annealing, torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2JU8 _pdbx_nmr_details.text ;Only intermolecular NOE (filter NOE) Experiments are entered in this entry. Experiments for assignments, other NOE, and J-coupling constants have been deposited with BMRB ID 15434 ; # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JU8 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JU8 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal ;Linge, O'Donoghue and Nilges ; 'structure solution' ARIA 1.2 1 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 1.1 2 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 3 'Johnson, One Moon Scientific' 'data analysis' NMRView 5 4 'Johnson, One Moon Scientific' 'chemical shift assignment' NMRView 5 5 'Johnson, One Moon Scientific' 'peak picking' NMRView 5 6 Varian collection VNMR 6.1C 7 'Koradi, Billeter and Wuthrich' 'graphic display' MOLMOL ? 8 'Koradi, Billeter and Wuthrich' 'data analysis' MOLMOL ? 9 'Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Th' 'structure analysis' Procheck ? 10 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 1.1 11 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ;This form of protein-ligand complex accounts for approximately 50% of ligand conformation among the 50 lowest energy structures. The protein only oleate-liganded structures have been deposted in BMRB 15433 and PDB 2ju7. ; _exptl.entry_id 2JU8 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JU8 _struct.title 'Solution-State Structures of Oleate-Liganded LFABP, Major Form of 1:2 Protein-Ligand Complex' _struct.pdbx_model_details ;This form of protein-ligand complex accounts for approximately 50% of ligand conformation among the 50 lowest energy structures. The protein only oleate-liganded structures have been deposted in BMRB 15433 and PDB 2ju7. ; _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JU8 _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' _struct_keywords.text 'protein, apo, LFABP, iLBP, FABP, Acetylation, Cytoplasm, Lipid-binding, Phosphorylation, Transport, LIPID BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 15 ? GLY A 23 ? PHE A 15 GLY A 23 1 ? 9 HELX_P HELX_P2 2 PRO A 25 ? ASP A 34 ? PRO A 25 ASP A 34 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 57 ? THR A 64 ? LYS A 57 THR A 64 A 2 LYS A 47 ? TYR A 54 ? LYS A 47 TYR A 54 A 3 VAL A 38 ? GLU A 44 ? VAL A 38 GLU A 44 A 4 GLY A 5 ? GLN A 12 ? GLY A 5 GLN A 12 A 5 ILE A 118 ? ARG A 126 ? ILE A 118 ARG A 126 A 6 THR A 108 ? LEU A 115 ? THR A 108 LEU A 115 A 7 ILE A 98 ? PHE A 104 ? ILE A 98 PHE A 104 A 8 MET A 91 ? PHE A 95 ? MET A 91 PHE A 95 A 9 LYS A 78 ? MET A 85 ? LYS A 78 MET A 85 A 10 GLU A 67 ? GLU A 72 ? GLU A 67 GLU A 72 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 57 ? O LYS A 57 N TYR A 54 ? N TYR A 54 A 2 3 O LYS A 47 ? O LYS A 47 N GLU A 44 ? N GLU A 44 A 3 4 O SER A 39 ? O SER A 39 N TYR A 7 ? N TYR A 7 A 4 5 N GLN A 10 ? N GLN A 10 O VAL A 123 ? O VAL A 123 A 5 6 O TYR A 120 ? O TYR A 120 N MET A 113 ? N MET A 113 A 6 7 O THR A 110 ? O THR A 110 N GLU A 103 ? N GLU A 103 A 7 8 O ILE A 98 ? O ILE A 98 N PHE A 95 ? N PHE A 95 A 8 9 O VAL A 92 ? O VAL A 92 N LYS A 84 ? N LYS A 84 A 9 10 O ALA A 81 ? O ALA A 81 N CYS A 69 ? N CYS A 69 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A OLA 128 ? 2 'BINDING SITE FOR RESIDUE OLA A 128' AC2 Software A OLA 129 ? 7 'BINDING SITE FOR RESIDUE OLA A 129' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 TYR A 54 ? TYR A 54 . ? 1_555 ? 2 AC1 2 ASN A 61 ? ASN A 61 . ? 1_555 ? 3 AC2 7 ILE A 41 ? ILE A 41 . ? 1_555 ? 4 AC2 7 PHE A 63 ? PHE A 63 . ? 1_555 ? 5 AC2 7 LEU A 71 ? LEU A 71 . ? 1_555 ? 6 AC2 7 VAL A 83 ? VAL A 83 . ? 1_555 ? 7 AC2 7 THR A 102 ? THR A 102 . ? 1_555 ? 8 AC2 7 ILE A 109 ? ILE A 109 . ? 1_555 ? 9 AC2 7 ARG A 122 ? ARG A 122 . ? 1_555 ? # _atom_sites.entry_id 2JU8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 MET 19 19 19 MET MET A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 MET 22 22 22 MET MET A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 HIS 43 43 43 HIS HIS A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 HIS 60 60 60 HIS HIS A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 CYS 69 69 69 CYS CYS A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 MET 74 74 74 MET MET A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 MET 85 85 85 MET MET A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 MET 91 91 91 MET MET A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 PHE 104 104 104 PHE PHE A . n A 1 105 ASN 105 105 105 ASN ASN A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 MET 113 113 113 MET MET A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 TYR 120 120 120 TYR TYR A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 ILE 127 127 127 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA 1 128 128 OLA OLA A . C 2 OLA 1 129 129 OLA OLA A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id LFABP 0.7 mM '[U-99% 13C; U-99% 15N]' 1 'sodium phosphate' 50 mM ? 1 'sodium azide' 0.02 % ? 1 EDTA 5 uM ? 1 D2O 100 % ? 1 oleate 3 % ? 1 'sodium chloride' 100 mM ? 1 LFABP 0.7 mM '[U-99% 15N]' 2 'sodium phosphate' 50 mM ? 2 'sodium azide' 0.02 % ? 2 EDTA 5 uM ? 2 D2O 98 % ? 2 oleate 3 % '[U-99% 13C]' 2 'sodium chloride' 100 mM ? 2 LFABP 0.7 mM '[U-99% 13C; U-99% 15N]' 3 'sodium phosphate' 50 mM ? 3 'sodium azide' 0.02 % ? 3 EDTA 5 uM ? 3 D2O 5 % ? 3 oleate 3 % ? 3 'sodium chloride' 100 mM ? 3 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 4 ? ? 68.59 139.64 2 1 ASN A 14 ? ? 69.62 136.33 3 1 PHE A 15 ? ? -145.92 -65.70 4 1 MET A 22 ? ? -95.21 -73.47 5 1 LYS A 46 ? ? 68.44 -20.68 6 1 ASN A 89 ? ? 51.39 12.61 7 1 LYS A 96 ? ? 60.16 -85.31 8 1 ASP A 107 ? ? -172.74 -29.75 9 2 PHE A 3 ? ? -141.90 -46.16 10 2 ASN A 14 ? ? 66.05 117.06 11 2 PHE A 15 ? ? -121.75 -64.83 12 2 ALA A 21 ? ? -72.77 -76.69 13 2 ASP A 88 ? ? -150.28 75.24 14 2 ASN A 89 ? ? 53.73 15.51 15 2 LYS A 96 ? ? 59.41 -85.71 16 2 ASP A 107 ? ? -146.27 -45.07 17 3 PHE A 3 ? ? 72.81 -34.44 18 3 SER A 4 ? ? 56.41 94.36 19 3 ASN A 14 ? ? 63.50 98.09 20 3 MET A 22 ? ? -104.39 -67.70 21 3 ASN A 89 ? ? 73.17 -3.54 22 3 LYS A 96 ? ? 52.82 -94.23 23 3 ASP A 107 ? ? -171.35 -35.07 24 3 ASP A 117 ? ? -155.85 4.99 25 4 PHE A 3 ? ? -143.72 -41.44 26 4 ASN A 14 ? ? 67.81 145.48 27 4 PHE A 15 ? ? -146.71 -57.09 28 4 MET A 22 ? ? -89.60 -75.08 29 4 LYS A 46 ? ? 66.78 -8.96 30 4 ASN A 89 ? ? 74.15 -5.01 31 4 ASP A 107 ? ? -166.72 -21.63 32 4 ASP A 117 ? ? -148.72 20.78 33 5 PHE A 3 ? ? -140.23 -37.31 34 5 ASN A 14 ? ? 56.34 78.86 35 5 SER A 56 ? ? -142.69 16.22 36 5 ASN A 89 ? ? 57.94 13.82 37 5 LYS A 96 ? ? 60.66 -87.03 38 5 ASP A 107 ? ? -148.79 -34.98 39 6 PHE A 3 ? ? -176.32 125.77 40 6 SER A 4 ? ? 70.35 146.23 41 6 ASN A 14 ? ? 92.24 18.83 42 6 SER A 56 ? ? -157.40 -45.41 43 6 ASN A 89 ? ? 49.67 12.42 44 6 LYS A 96 ? ? 52.54 -155.23 45 6 ASP A 107 ? ? -169.23 -20.38 46 6 ASP A 117 ? ? -164.23 16.45 47 7 SER A 4 ? ? 50.61 -150.76 48 7 ASN A 14 ? ? 58.94 94.51 49 7 MET A 22 ? ? -104.74 -75.56 50 7 LYS A 46 ? ? 68.31 -17.56 51 7 ASN A 89 ? ? 79.60 -7.71 52 7 LYS A 96 ? ? 61.85 -81.84 53 7 ASP A 107 ? ? -171.33 -36.82 54 8 PHE A 3 ? ? -142.05 -37.18 55 8 ASN A 14 ? ? 66.52 120.52 56 8 PHE A 15 ? ? -130.07 -61.97 57 8 ALA A 21 ? ? -73.09 -75.02 58 8 LYS A 46 ? ? 69.16 -18.61 59 8 SER A 56 ? ? -142.76 18.28 60 8 ASP A 88 ? ? 54.19 -134.44 61 8 ASN A 89 ? ? -45.60 0.95 62 8 LYS A 96 ? ? 55.13 -153.73 63 8 ASP A 107 ? ? -151.19 -47.67 64 9 PHE A 3 ? ? -146.96 -45.46 65 9 ASN A 14 ? ? 62.79 100.33 66 9 PHE A 15 ? ? -122.41 -55.13 67 9 MET A 22 ? ? -101.18 -69.43 68 9 LYS A 46 ? ? 68.58 -17.84 69 9 LEU A 65 ? ? -41.83 -93.52 70 9 ASP A 88 ? ? -151.42 59.10 71 9 ASN A 89 ? ? 54.85 14.24 72 9 ASP A 107 ? ? -172.89 -28.24 73 10 PHE A 3 ? ? -139.14 -37.73 74 10 ASN A 14 ? ? 80.15 148.23 75 10 PHE A 15 ? ? -166.95 -45.07 76 10 MET A 22 ? ? -93.78 -76.71 77 10 SER A 56 ? ? 66.75 -0.03 78 10 ASN A 89 ? ? 73.42 -10.10 79 10 LYS A 96 ? ? 59.38 -88.60 80 10 ASP A 107 ? ? -172.79 -41.20 81 10 ASP A 117 ? ? -164.10 16.93 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'OLEIC ACID' _pdbx_entity_nonpoly.comp_id OLA #