HEADER LIPID BINDING PROTEIN 15-AUG-07 2JU8 TITLE SOLUTION-STATE STRUCTURES OF OLEATE-LIGANDED LFABP, MAJOR FORM OF 1:2 TITLE 2 PROTEIN-LIGAND COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY ACID-BINDING PROTEIN, LIVER; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-FABP, Z-PROTEIN, SQUALENE- AND STEROL-CARRIER PROTEIN, COMPND 5 SCP, P14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: FABP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: PLYS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET-11A KEYWDS PROTEIN, APO, LFABP, ILBP, FABP, ACETYLATION, CYTOPLASM, LIPID- KEYWDS 2 BINDING, PHOSPHORYLATION, TRANSPORT, LIPID BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Y.HE,X.YANG,H.WANG,R.ESTEPHAN,F.FRANCIS,S.KODUKULA,J.STORCH,R.E.STARK REVDAT 3 16-MAR-22 2JU8 1 REMARK REVDAT 2 24-FEB-09 2JU8 1 VERSN REVDAT 1 20-NOV-07 2JU8 0 JRNL AUTH Y.HE,X.YANG,H.WANG,R.ESTEPHAN,F.FRANCIS,S.KODUKULA,J.STORCH, JRNL AUTH 2 R.E.STARK JRNL TITL SOLUTION-STATE MOLECULAR STRUCTURE OF APO AND JRNL TITL 2 OLEATE-LIGANDED LIVER FATTY ACID-BINDING PROTEIN JRNL REF BIOCHEMISTRY V. 46 12543 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17927211 JRNL DOI 10.1021/BI701092R REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, CNS 1.1 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JU8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000100296. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7-1.0 MM [U-99% 13C; U-99% REMARK 210 15N] LFABP, 50 MM SODIUM REMARK 210 PHOSPHATE, 0.02 % SODIUM AZIDE, REMARK 210 5 UM EDTA, 100 % D2O, 3 EQ REMARK 210 OLEATE, 100 MM SODIUM CHLORIDE, REMARK 210 100% D2O; 0.7-1.0 MM [U-99% 15N] REMARK 210 LFABP, 50 MM SODIUM PHOSPHATE, REMARK 210 0.02 % SODIUM AZIDE, 5 UM EDTA, REMARK 210 98 % D2O, 3 EQ [U-99% 13C] REMARK 210 OLEATE, 100 MM SODIUM CHLORIDE, REMARK 210 95% H2O/5% D2O; 0.7-1.0 MM [U-99% REMARK 210 13C; U-99% 15N] LFABP, 50 MM REMARK 210 SODIUM PHOSPHATE, 0.02 % SODIUM REMARK 210 AZIDE, 5 UM EDTA, 5 % D2O, 3 EQ REMARK 210 OLEATE, 100 MM SODIUM CHLORIDE, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 13C-FILTERED NOE; 2D 1H-13C REMARK 210 HSQC; 2D 1H-13C HMQC-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1, NMRPIPE, NMRVIEW 5, REMARK 210 VNMR 6.1C, MOLMOL, PROCHECK REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ONLY INTERMOLECULAR NOE (FILTER NOE) EXPERIMENTS ARE REMARK 210 ENTERED IN THIS ENTRY. EXPERIMENTS FOR ASSIGNMENTS, OTHER NOE, REMARK 210 AND J-COUPLING CONSTANTS HAVE BEEN DEPOSITED WITH BMRB ID 15434 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 4 139.64 68.59 REMARK 500 1 ASN A 14 136.33 69.62 REMARK 500 1 PHE A 15 -65.70 -145.92 REMARK 500 1 MET A 22 -73.47 -95.21 REMARK 500 1 LYS A 46 -20.68 68.44 REMARK 500 1 ASN A 89 12.61 51.39 REMARK 500 1 LYS A 96 -85.31 60.16 REMARK 500 1 ASP A 107 -29.75 -172.74 REMARK 500 2 PHE A 3 -46.16 -141.90 REMARK 500 2 ASN A 14 117.06 66.05 REMARK 500 2 PHE A 15 -64.83 -121.75 REMARK 500 2 ALA A 21 -76.69 -72.77 REMARK 500 2 ASP A 88 75.24 -150.28 REMARK 500 2 ASN A 89 15.51 53.73 REMARK 500 2 LYS A 96 -85.71 59.41 REMARK 500 2 ASP A 107 -45.07 -146.27 REMARK 500 3 PHE A 3 -34.44 72.81 REMARK 500 3 SER A 4 94.36 56.41 REMARK 500 3 ASN A 14 98.09 63.50 REMARK 500 3 MET A 22 -67.70 -104.39 REMARK 500 3 ASN A 89 -3.54 73.17 REMARK 500 3 LYS A 96 -94.23 52.82 REMARK 500 3 ASP A 107 -35.07 -171.35 REMARK 500 3 ASP A 117 4.99 -155.85 REMARK 500 4 PHE A 3 -41.44 -143.72 REMARK 500 4 ASN A 14 145.48 67.81 REMARK 500 4 PHE A 15 -57.09 -146.71 REMARK 500 4 MET A 22 -75.08 -89.60 REMARK 500 4 LYS A 46 -8.96 66.78 REMARK 500 4 ASN A 89 -5.01 74.15 REMARK 500 4 ASP A 107 -21.63 -166.72 REMARK 500 4 ASP A 117 20.78 -148.72 REMARK 500 5 PHE A 3 -37.31 -140.23 REMARK 500 5 ASN A 14 78.86 56.34 REMARK 500 5 SER A 56 16.22 -142.69 REMARK 500 5 ASN A 89 13.82 57.94 REMARK 500 5 LYS A 96 -87.03 60.66 REMARK 500 5 ASP A 107 -34.98 -148.79 REMARK 500 6 PHE A 3 125.77 -176.32 REMARK 500 6 SER A 4 146.23 70.35 REMARK 500 6 ASN A 14 18.83 92.24 REMARK 500 6 SER A 56 -45.41 -157.40 REMARK 500 6 ASN A 89 12.42 49.67 REMARK 500 6 LYS A 96 -155.23 52.54 REMARK 500 6 ASP A 107 -20.38 -169.23 REMARK 500 6 ASP A 117 16.45 -164.23 REMARK 500 7 SER A 4 -150.76 50.61 REMARK 500 7 ASN A 14 94.51 58.94 REMARK 500 7 MET A 22 -75.56 -104.74 REMARK 500 7 LYS A 46 -17.56 68.31 REMARK 500 REMARK 500 THIS ENTRY HAS 81 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 129 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4098 RELATED DB: BMRB REMARK 900 RESONANCE ASSIGNMENTS AND SECONDARY STRUCTURE REMARK 900 RELATED ID: 15429 RELATED DB: BMRB REMARK 900 SOLUTION-STATE STRUCTURES OF APO-LFABP (LIVER FATTY ACID-BINDING REMARK 900 PROTEIN) REMARK 900 RELATED ID: 2JU3 RELATED DB: PDB REMARK 900 SOLUTION-STATE STRUCTURES OF APO-LFABP (LIVER FATTY ACID-BINDING REMARK 900 PROTEIN) REMARK 900 RELATED ID: 15433 RELATED DB: BMRB REMARK 900 SOLUTION-STATE STRUCTURES OF OLEATE-LIGANDED LFABP, PROTEIN ONLY REMARK 900 RELATED ID: 2JU7 RELATED DB: PDB REMARK 900 SOLUTION-STATE STRUCTURES OF OLEATE-LIGANDED LFABP, PROTEIN ONLY REMARK 900 RELATED ID: 15434 RELATED DB: BMRB DBREF 2JU8 A 1 127 UNP P02692 FABPL_RAT 1 127 SEQRES 1 A 127 MET ASN PHE SER GLY LYS TYR GLN VAL GLN SER GLN GLU SEQRES 2 A 127 ASN PHE GLU PRO PHE MET LYS ALA MET GLY LEU PRO GLU SEQRES 3 A 127 ASP LEU ILE GLN LYS GLY LYS ASP ILE LYS GLY VAL SER SEQRES 4 A 127 GLU ILE VAL HIS GLU GLY LYS LYS VAL LYS LEU THR ILE SEQRES 5 A 127 THR TYR GLY SER LYS VAL ILE HIS ASN GLU PHE THR LEU SEQRES 6 A 127 GLY GLU GLU CYS GLU LEU GLU THR MET THR GLY GLU LYS SEQRES 7 A 127 VAL LYS ALA VAL VAL LYS MET GLU GLY ASP ASN LYS MET SEQRES 8 A 127 VAL THR THR PHE LYS GLY ILE LYS SER VAL THR GLU PHE SEQRES 9 A 127 ASN GLY ASP THR ILE THR ASN THR MET THR LEU GLY ASP SEQRES 10 A 127 ILE VAL TYR LYS ARG VAL SER LYS ARG ILE HET OLA A 128 53 HET OLA A 129 53 HETNAM OLA OLEIC ACID FORMUL 2 OLA 2(C18 H34 O2) HELIX 1 1 PHE A 15 GLY A 23 1 9 HELIX 2 2 PRO A 25 ASP A 34 1 10 SHEET 1 A10 LYS A 57 THR A 64 0 SHEET 2 A10 LYS A 47 TYR A 54 -1 N TYR A 54 O LYS A 57 SHEET 3 A10 VAL A 38 GLU A 44 -1 N GLU A 44 O LYS A 47 SHEET 4 A10 GLY A 5 GLN A 12 -1 N TYR A 7 O SER A 39 SHEET 5 A10 ILE A 118 ARG A 126 -1 O VAL A 123 N GLN A 10 SHEET 6 A10 THR A 108 LEU A 115 -1 N MET A 113 O TYR A 120 SHEET 7 A10 ILE A 98 PHE A 104 -1 N GLU A 103 O THR A 110 SHEET 8 A10 MET A 91 PHE A 95 -1 N PHE A 95 O ILE A 98 SHEET 9 A10 LYS A 78 MET A 85 -1 N LYS A 84 O VAL A 92 SHEET 10 A10 GLU A 67 GLU A 72 -1 N CYS A 69 O ALA A 81 SITE 1 AC1 2 TYR A 54 ASN A 61 SITE 1 AC2 7 ILE A 41 PHE A 63 LEU A 71 VAL A 83 SITE 2 AC2 7 THR A 102 ILE A 109 ARG A 122 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1