HEADER DE NOVO PROTEIN 16-AUG-07 2JUA TITLE ASSIGNMENT, STRUCTURE, AND DYNAMICS OF DE NOVO DESIGNED PROTEIN S836 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO PROTEIN S836; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: AMBIGUOUS CONFORMATIONAL STATES: Y2, Q24, AND N84 COMPND 6 REGISTER POSSIBLE ALTERNATE ALPHA CARBON CHEMICAL SHIFTS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 3 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 4 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.GO,S.KIM,J.S.BAUM,M.H.HECHT REVDAT 3 16-MAR-22 2JUA 1 REMARK REVDAT 2 24-FEB-09 2JUA 1 VERSN REVDAT 1 20-MAY-08 2JUA 0 JRNL AUTH A.GO,S.KIM,J.BAUM,M.H.HECHT JRNL TITL STRUCTURE AND DYNAMICS OF DE NOVO PROTEINS FROM A DESIGNED JRNL TITL 2 SUPERFAMILY OF 4-HELIX BUNDLES. JRNL REF PROTEIN SCI. V. 17 821 2008 JRNL REFN ISSN 0961-8368 JRNL PMID 18436954 JRNL DOI 10.1110/PS.073377908 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.GO,S.KIM,M.H.HECHT,J.S.BAUM REMARK 1 TITL NMR ASSIGNMENT OF S836: A DE NOVO PROTEIN FROM A DESIGNED REMARK 1 TITL 2 PROTEIN SUPERFAMILY REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, F. ET AL. (NMRPIPE), SCHWIETERS, C.D. ET REMARK 3 AL. (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JUA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000100298. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2 MM [U-15N] S836, 10 % [U-2H] REMARK 210 D2O, 50 MM ACETIC ACID - SODIUM REMARK 210 ACETATE, 90% H2O/10% D2O; 2 MM REMARK 210 [U-13C; U-15N] S836, 10 % [U-2H] REMARK 210 D2O, 50 MM [U-13C] ACETIC ACID - REMARK 210 SODIUM ACETATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D HNHA; REMARK 210 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 3D 1H-13C NOESY; 3D (HCA) REMARK 210 CO(CA)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRDRAW, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 82 H HIS A 86 1.53 REMARK 500 O ILE A 44 H PHE A 47 1.54 REMARK 500 O VAL A 40 H ASP A 43 1.57 REMARK 500 O MET A 60 H PHE A 64 1.57 REMARK 500 O SER A 53 H LYS A 56 1.57 REMARK 500 O LEU A 5 H LEU A 9 1.58 REMARK 500 O ILE A 89 H PHE A 93 1.59 REMARK 500 OE1 GLN A 24 H GLY A 78 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 4 -36.37 -36.44 REMARK 500 1 GLN A 27 -2.63 -58.10 REMARK 500 1 MET A 30 -30.30 -36.96 REMARK 500 1 ASN A 31 -66.10 -90.43 REMARK 500 1 ILE A 41 -33.87 -35.66 REMARK 500 1 SER A 53 36.48 -96.37 REMARK 500 1 GLN A 58 -8.79 -45.92 REMARK 500 1 LEU A 75 -4.80 -56.86 REMARK 500 1 ASN A 80 -8.33 -51.58 REMARK 500 1 GLU A 97 -10.70 -49.70 REMARK 500 1 HIS A 101 18.84 -65.40 REMARK 500 2 MET A 30 -32.01 -36.95 REMARK 500 2 GLN A 38 -39.46 -31.96 REMARK 500 2 ILE A 41 -15.77 -45.98 REMARK 500 2 GLN A 49 -39.90 -136.79 REMARK 500 2 SER A 53 126.72 -33.71 REMARK 500 2 GLN A 76 15.00 -68.39 REMARK 500 2 ASP A 79 43.42 -90.50 REMARK 500 2 ASN A 80 -8.87 -52.89 REMARK 500 2 GLU A 97 -6.83 -49.61 REMARK 500 3 GLN A 27 6.05 -69.51 REMARK 500 3 MET A 30 -12.41 -43.75 REMARK 500 3 GLN A 38 -36.40 -36.67 REMARK 500 3 GLN A 58 -11.24 -44.28 REMARK 500 3 LEU A 75 3.03 -63.98 REMARK 500 3 ASP A 79 35.93 -69.61 REMARK 500 3 ASN A 80 -3.33 -51.96 REMARK 500 3 HIS A 94 2.57 -63.66 REMARK 500 3 GLU A 97 -8.21 -51.04 REMARK 500 3 HIS A 101 -15.97 -47.61 REMARK 500 4 TYR A 2 -70.24 -48.47 REMARK 500 4 ASN A 6 -36.22 -37.04 REMARK 500 4 HIS A 18 8.48 -68.32 REMARK 500 4 HIS A 22 6.12 -62.89 REMARK 500 4 GLN A 24 -143.20 -151.87 REMARK 500 4 GLN A 38 -31.52 -35.50 REMARK 500 4 SER A 53 48.85 -80.62 REMARK 500 4 GLN A 58 -5.84 -49.24 REMARK 500 4 LEU A 75 -8.86 -50.48 REMARK 500 4 ASN A 80 -4.97 -51.53 REMARK 500 4 HIS A 94 4.57 -66.01 REMARK 500 4 GLU A 97 -13.59 -48.10 REMARK 500 5 GLN A 24 -157.81 -151.86 REMARK 500 5 GLN A 58 -6.54 -49.24 REMARK 500 5 GLN A 76 -18.07 -49.46 REMARK 500 5 ASP A 79 41.05 -68.29 REMARK 500 5 GLU A 97 -6.15 -52.14 REMARK 500 6 TYR A 2 -77.08 -45.82 REMARK 500 6 ASN A 6 -32.63 -37.70 REMARK 500 6 HIS A 18 14.99 -68.36 REMARK 500 REMARK 500 THIS ENTRY HAS 194 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5687 RELATED DB: BMRB REMARK 900 SIBLING PROTEIN S824 REMARK 900 RELATED ID: 1P68 RELATED DB: PDB REMARK 900 SIBLING PROTEIN S824 REMARK 900 RELATED ID: 15437 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS IS A DE NOVO PROTEIN DESIGN SEQUENCE. DBREF 2JUA A 1 102 PDB 2JUA 2JUA 1 102 SEQRES 1 A 102 MET TYR GLY LYS LEU ASN ASP LEU LEU GLU ASP LEU GLN SEQRES 2 A 102 GLU VAL LEU LYS HIS VAL ASN GLN HIS TRP GLN GLY GLY SEQRES 3 A 102 GLN LYS ASN MET ASN LYS VAL ASP HIS HIS LEU GLN ASN SEQRES 4 A 102 VAL ILE GLU ASP ILE HIS ASP PHE MET GLN GLY GLY GLY SEQRES 5 A 102 SER GLY GLY LYS LEU GLN GLU MET MET LYS GLU PHE GLN SEQRES 6 A 102 GLN VAL LEU ASP GLU ILE LYS GLN GLN LEU GLN GLY GLY SEQRES 7 A 102 ASP ASN SER LEU HIS ASN VAL HIS GLU ASN ILE LYS GLU SEQRES 8 A 102 ILE PHE HIS HIS LEU GLU GLU LEU VAL HIS ARG HELIX 1 1 GLY A 3 GLN A 21 1 19 HELIX 2 2 LYS A 28 GLY A 50 1 23 HELIX 3 3 SER A 53 LEU A 75 1 23 HELIX 4 4 SER A 81 HIS A 101 1 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1