HEADER BIOSYNTHETIC PROTEIN 24-AUG-07 2JUG TITLE MULTIENZYME DOCKING IN HYBRID MEGASYNTHETASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBC PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 2-74; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANGIOCOCCUS DISCIFORMIS; SOURCE 3 ORGANISM_TAXID: 38; SOURCE 4 STRAIN: AN D48; SOURCE 5 GENE: TUBC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PGEX-6P-1 KEYWDS DOCKING DOMAIN, DIMER, NONRIBOSOMAL PEPTIDE SYNTHETASE, TUBULYSIN, KEYWDS 2 LIGASE, PHOSPHOPANTETHEINE, BIOSYNTHETIC PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.D.RICHTER,D.NIETLISPACH,R.W.BROADHURST,K.J.WEISSMAN REVDAT 5 16-MAR-22 2JUG 1 REMARK SEQADV REVDAT 4 24-FEB-09 2JUG 1 VERSN REVDAT 3 15-JAN-08 2JUG 1 JRNL REVDAT 2 18-DEC-07 2JUG 1 HEADER REVDAT 1 11-DEC-07 2JUG 0 JRNL AUTH C.D.RICHTER,D.NIETLISPACH,R.W.BROADHURST,K.J.WEISSMAN JRNL TITL MULTIENZYME DOCKING IN HYBRID MEGASYNTHETASES JRNL REF NAT.CHEM.BIOL. V. 4 75 2008 JRNL REFN ISSN 1552-4450 JRNL PMID 18066054 JRNL DOI 10.1038/NCHEMBIO.2007.61 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, ARIA 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING USING ARIA 1.2 REMARK 4 REMARK 4 2JUG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000100304. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 TUBCDD, 20 UM TSP, 0.1 % SODIUM REMARK 210 AZIDE, 50 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O; 0.5 MM [U-100% 13C; U- REMARK 210 100% 15N] TUBCDD, 20 UM TSP, 0.1 REMARK 210 % SODIUM AZIDE, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.5 MM TUBCDD, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY; 3D 1H-15N REMARK 210 NOESY; 3D 13C-SEPARATED 12C- REMARK 210 SELECTED NOESY; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 3D REMARK 210 HBHA(CO)NH; 3D HNCO; 3D 1H-15N REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AZARA, CCPNMR ANALYSIS 1.0.15 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 -75.95 -176.42 REMARK 500 1 GLN A 60 105.84 -51.32 REMARK 500 1 GLN A 64 41.63 -81.19 REMARK 500 1 LEU A 68 -177.70 67.91 REMARK 500 1 ALA A 70 73.70 56.92 REMARK 500 1 VAL A 72 -29.79 68.96 REMARK 500 1 ASN A 75 -169.93 -118.89 REMARK 500 1 ARG A 77 -33.68 -171.77 REMARK 500 1 SER B 5 -48.87 72.21 REMARK 500 1 GLN B 60 105.25 -51.02 REMARK 500 1 GLN B 64 47.28 -82.49 REMARK 500 1 LEU B 68 -171.44 65.11 REMARK 500 1 ALA B 70 82.48 61.59 REMARK 500 2 ALA A 7 -66.33 72.69 REMARK 500 2 SER A 63 -52.61 -136.01 REMARK 500 2 GLN A 64 113.41 69.44 REMARK 500 2 LEU A 69 -173.01 63.64 REMARK 500 2 ALA A 70 129.85 73.09 REMARK 500 2 ALA A 73 -88.93 58.42 REMARK 500 2 ARG A 74 19.50 -168.92 REMARK 500 2 ASN A 75 89.85 59.56 REMARK 500 2 LEU B 3 -77.95 -159.26 REMARK 500 2 SER B 6 24.99 -161.16 REMARK 500 2 SER B 63 -47.92 -134.20 REMARK 500 2 GLN B 64 98.98 64.63 REMARK 500 2 SER B 67 18.27 -150.36 REMARK 500 2 LEU B 69 -166.75 62.73 REMARK 500 2 ALA B 70 79.10 58.61 REMARK 500 2 ALA B 73 -68.36 -145.64 REMARK 500 2 ARG B 74 -33.42 178.31 REMARK 500 3 SER A 5 -46.60 178.22 REMARK 500 3 SER A 63 93.62 62.79 REMARK 500 3 GLN A 64 -68.19 -102.03 REMARK 500 3 SER A 67 104.06 -161.54 REMARK 500 3 PRO A 71 39.28 -81.87 REMARK 500 3 SER B 6 41.52 -155.54 REMARK 500 3 ALA B 7 116.78 70.20 REMARK 500 3 SER B 63 95.00 64.07 REMARK 500 3 GLN B 64 -66.58 -100.95 REMARK 500 3 ASN B 75 92.44 73.72 REMARK 500 4 SER A 67 99.63 66.60 REMARK 500 4 PRO A 71 44.77 -86.46 REMARK 500 4 SER B 6 -90.52 44.32 REMARK 500 4 SER B 67 94.06 67.79 REMARK 500 4 PRO B 71 77.01 -67.37 REMARK 500 4 ARG B 77 82.23 62.41 REMARK 500 5 SER A 5 -76.60 -58.64 REMARK 500 5 SER A 6 111.81 -167.80 REMARK 500 5 PRO A 61 84.69 -62.80 REMARK 500 5 SER A 62 -66.69 -137.04 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2JUG A 6 78 UNP Q5ZPA9 Q5ZPA9_9DELT 2 74 DBREF 2JUG B 6 78 UNP Q5ZPA9 Q5ZPA9_9DELT 2 74 SEQADV 2JUG GLY A 1 UNP Q5ZPA9 EXPRESSION TAG SEQADV 2JUG PRO A 2 UNP Q5ZPA9 EXPRESSION TAG SEQADV 2JUG LEU A 3 UNP Q5ZPA9 EXPRESSION TAG SEQADV 2JUG GLY A 4 UNP Q5ZPA9 EXPRESSION TAG SEQADV 2JUG SER A 5 UNP Q5ZPA9 EXPRESSION TAG SEQADV 2JUG GLY B 1 UNP Q5ZPA9 EXPRESSION TAG SEQADV 2JUG PRO B 2 UNP Q5ZPA9 EXPRESSION TAG SEQADV 2JUG LEU B 3 UNP Q5ZPA9 EXPRESSION TAG SEQADV 2JUG GLY B 4 UNP Q5ZPA9 EXPRESSION TAG SEQADV 2JUG SER B 5 UNP Q5ZPA9 EXPRESSION TAG SEQRES 1 A 78 GLY PRO LEU GLY SER SER ALA GLY ALA LEU LEU ALA HIS SEQRES 2 A 78 ALA ALA SER LEU GLY VAL ARG LEU TRP VAL GLU GLY GLU SEQRES 3 A 78 ARG LEU ARG PHE GLN ALA PRO PRO GLY VAL MET THR PRO SEQRES 4 A 78 GLU LEU GLN SER ARG LEU GLY GLY ALA ARG HIS GLU LEU SEQRES 5 A 78 ILE ALA LEU LEU ARG GLN LEU GLN PRO SER SER GLN GLY SEQRES 6 A 78 GLY SER LEU LEU ALA PRO VAL ALA ARG ASN GLY ARG LEU SEQRES 1 B 78 GLY PRO LEU GLY SER SER ALA GLY ALA LEU LEU ALA HIS SEQRES 2 B 78 ALA ALA SER LEU GLY VAL ARG LEU TRP VAL GLU GLY GLU SEQRES 3 B 78 ARG LEU ARG PHE GLN ALA PRO PRO GLY VAL MET THR PRO SEQRES 4 B 78 GLU LEU GLN SER ARG LEU GLY GLY ALA ARG HIS GLU LEU SEQRES 5 B 78 ILE ALA LEU LEU ARG GLN LEU GLN PRO SER SER GLN GLY SEQRES 6 B 78 GLY SER LEU LEU ALA PRO VAL ALA ARG ASN GLY ARG LEU HELIX 1 1 SER A 6 GLY A 18 1 13 HELIX 2 2 THR A 38 GLY A 46 1 9 HELIX 3 3 ALA A 48 GLN A 60 1 13 HELIX 4 4 ALA B 7 GLY B 18 1 12 HELIX 5 5 THR B 38 GLY B 46 1 9 HELIX 6 6 ALA B 48 GLN B 58 1 11 SHEET 1 A 2 ARG A 20 GLU A 24 0 SHEET 2 A 2 ARG A 27 GLN A 31 -1 O ARG A 29 N TRP A 22 SHEET 1 B 2 ARG B 20 GLU B 24 0 SHEET 2 B 2 ARG B 27 GLN B 31 -1 O ARG B 29 N TRP B 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1