HEADER TRANSCRIPTION 31-AUG-07 2JUO TITLE GABPA OST DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GA-BINDING PROTEIN ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GABP-SUBUNIT ALPHA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GABPA, E4TF1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A(+) KEYWDS OST, UBIQUITIN, TRANSCRIPTION FACTOR, NMR ENSEMBLE, GA-BINDING KEYWDS 2 PROTEIN, DNA-BINDING, NUCLEUS, TRANSCRIPTION REGULATION, KEYWDS 3 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR H.KANG,M.L.NELSON,C.D.MACKERETH,M.SCHAERPF,B.J.GRAVES,L.P.MCINTOSH REVDAT 4 14-JUN-23 2JUO 1 REMARK REVDAT 3 19-FEB-20 2JUO 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JUO 1 VERSN REVDAT 1 08-APR-08 2JUO 0 JRNL AUTH H.S.KANG,M.L.NELSON,C.D.MACKERETH,M.SCHARPF,B.J.GRAVES, JRNL AUTH 2 L.P.MCINTOSH JRNL TITL IDENTIFICATION AND STRUCTURAL CHARACTERIZATION OF A JRNL TITL 2 CBP/P300-BINDING DOMAIN FROM THE ETS FAMILY TRANSCRIPTION JRNL TITL 3 FACTOR GABP ALPHA JRNL REF J.MOL.BIOL. V. 377 636 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18295234 JRNL DOI 10.1016/J.JMB.2008.01.054 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, ARIA 1.2, CNS 1.1 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA), BRUNGER, ADAMS, REMARK 3 CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JUO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000100312. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.1 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE, 20 MM REMARK 210 SODIUM CHLORIDE, 1 MM [U-100% REMARK 210 13C; U-100% 15N] GABPA OST, 2 MM REMARK 210 DTT, 90% H2O/10% D2O; 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 1 MM [U-100% 15N] REMARK 210 GABPA OST, 2 MM DTT, 90% H2O/10% REMARK 210 D2O; 20 MM SODIUM PHOSPHATE, 50 REMARK 210 MM SODIUM CHLORIDE, 1 MM [U-10% REMARK 210 13C; U-100% 15N] GABPA OST, 2 MM REMARK 210 DTT, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HNCACB; 3D 1H-15N NOESY; 3D REMARK 210 1H-15N TOCSY; 3D HCCH-TOCSY; REMARK 210 SIMULTANEOUS CN NOESY; EZ-HMQC- REMARK 210 NH2; N-CG SPIN ECHO; CO-CG SPIN REMARK 210 ECHO; 15N IPAP; 3D HNHB; T1 T2 REMARK 210 HNNOE; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITY; INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1, SPARKY 3.11, TALOS, REMARK 210 MOLMOL, NMRPIPE, NMRDRAW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 LEU A 70 HD12 LEU A 75 1.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 35 65.99 -152.94 REMARK 500 1 ASP A 64 -78.50 -141.99 REMARK 500 1 ASP A 72 -16.20 87.20 REMARK 500 1 LYS A 87 73.79 -115.54 REMARK 500 1 THR A 88 -101.42 -109.40 REMARK 500 1 THR A 116 -82.33 60.10 REMARK 500 1 ALA A 117 -35.17 -153.65 REMARK 500 1 THR A 119 121.92 -28.97 REMARK 500 2 ALA A 35 69.68 176.49 REMARK 500 2 GLU A 36 99.96 -69.22 REMARK 500 2 ASP A 72 -12.23 87.34 REMARK 500 2 PRO A 77 -31.05 -31.78 REMARK 500 2 THR A 88 -112.94 -100.41 REMARK 500 2 ASP A 89 128.96 -174.41 REMARK 500 2 GLU A 105 109.01 -56.61 REMARK 500 2 THR A 116 -71.23 70.13 REMARK 500 2 ALA A 117 -45.44 173.00 REMARK 500 2 THR A 119 -18.67 65.40 REMARK 500 3 ASP A 72 -22.66 89.28 REMARK 500 3 THR A 88 -107.31 -104.06 REMARK 500 3 ASP A 89 143.65 -177.70 REMARK 500 3 TYR A 101 -101.77 -89.61 REMARK 500 3 THR A 116 -73.49 64.04 REMARK 500 3 ALA A 117 -70.56 175.30 REMARK 500 3 THR A 119 -38.12 176.07 REMARK 500 4 ASP A 64 -76.78 -137.61 REMARK 500 4 ASP A 72 -16.06 86.07 REMARK 500 4 LYS A 87 74.63 -116.20 REMARK 500 4 THR A 88 -100.18 -104.27 REMARK 500 4 ASP A 89 126.06 -177.04 REMARK 500 4 GLN A 102 101.38 -46.94 REMARK 500 4 THR A 116 -73.37 69.99 REMARK 500 4 ALA A 117 -68.20 -163.51 REMARK 500 4 THR A 119 -47.69 -166.74 REMARK 500 5 ALA A 35 88.45 58.57 REMARK 500 5 ASP A 64 -74.01 -151.06 REMARK 500 5 ASP A 72 -15.78 85.26 REMARK 500 5 PRO A 77 -32.86 -26.90 REMARK 500 5 THR A 88 -121.81 -101.98 REMARK 500 5 THR A 116 -77.31 66.82 REMARK 500 5 ALA A 117 -35.85 -171.34 REMARK 500 5 GLU A 118 88.43 -62.69 REMARK 500 6 ASP A 64 -76.39 -146.47 REMARK 500 6 THR A 88 -108.50 -117.17 REMARK 500 6 GLN A 102 71.48 62.63 REMARK 500 6 THR A 116 -68.14 69.60 REMARK 500 6 ALA A 117 -31.50 -179.07 REMARK 500 6 THR A 119 103.50 -42.03 REMARK 500 7 ASP A 64 -78.24 -130.22 REMARK 500 7 ASP A 72 -18.13 86.33 REMARK 500 REMARK 500 THIS ENTRY HAS 79 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15451 RELATED DB: BMRB DBREF 2JUO A 35 121 UNP Q00422 GABPA_MOUSE 35 121 SEQADV 2JUO MET A 34 UNP Q00422 EXPRESSION TAG SEQADV 2JUO TRP A 122 UNP Q00422 EXPRESSION TAG SEQRES 1 A 89 MET ALA GLU CYS VAL SER GLN ALA ILE ASP ILE ASN GLU SEQRES 2 A 89 PRO ILE GLY ASN LEU LYS LYS LEU LEU GLU PRO ARG LEU SEQRES 3 A 89 GLN CYS SER LEU ASP ALA HIS GLU ILE CYS LEU GLN ASP SEQRES 4 A 89 ILE GLN LEU ASP PRO ASP ARG SER LEU PHE ASP GLN GLY SEQRES 5 A 89 VAL LYS THR ASP GLY THR VAL GLN LEU SER VAL GLN VAL SEQRES 6 A 89 ILE SER TYR GLN GLY MET GLU PRO LYS LEU ASN ILE LEU SEQRES 7 A 89 GLU ILE VAL LYS THR ALA GLU THR VAL GLU TRP HELIX 1 1 PRO A 47 GLY A 49 5 3 HELIX 2 2 ASN A 50 LEU A 55 1 6 HELIX 3 3 LEU A 55 GLN A 60 1 6 SHEET 1 A 5 GLU A 36 ASP A 43 0 SHEET 2 A 5 THR A 91 ILE A 99 -1 O VAL A 98 N GLU A 36 SHEET 3 A 5 LYS A 107 LYS A 115 -1 O LYS A 107 N ILE A 99 SHEET 4 A 5 GLU A 67 LEU A 70 1 N CYS A 69 O LEU A 108 SHEET 5 A 5 ILE A 73 GLN A 74 -1 O ILE A 73 N LEU A 70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1