data_2JVB # _entry.id 2JVB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JVB pdb_00002jvb 10.2210/pdb2jvb/pdb RCSB RCSB100335 ? ? WWPDB D_1000100335 ? ? # _pdbx_database_related.db_id 7325 _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Backbone and Ile(d1), Leu and Val Sidechain Resonance Assignments of the NUDIX Domain of Yeast Dcp2' _pdbx_database_related.content_type unspecified # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2JVB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-09-16 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Deshmukh, M.' 1 'Gross, J.' 2 # _citation.id primary _citation.title 'mRNA Decapping Is Promoted by an RNA-Binding Channel in Dcp2.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 29 _citation.page_first 324 _citation.page_last 336 _citation.year 2008 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18280238 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2007.11.027 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Deshmukh, M.V.' 1 ? primary 'Jones, B.N.' 2 ? primary 'Quang-Dang, D.U.' 3 ? primary 'Flinders, J.' 4 ? primary 'Floor, S.N.' 5 ? primary 'Kim, C.' 6 ? primary 'Jemielity, J.' 7 ? primary 'Kalek, M.' 8 ? primary 'Darzynkiewicz, E.' 9 ? primary 'Gross, J.D.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'mRNA-decapping enzyme subunit 2' _entity.formula_weight 17378.910 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.-.-.- _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein PSU1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KKSIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKI FLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSNIKYYLINSMMRPLSMWLRHQRQIKNED ; _entity_poly.pdbx_seq_one_letter_code_can ;KKSIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKI FLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSNIKYYLINSMMRPLSMWLRHQRQIKNED ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 LYS n 1 3 SER n 1 4 ILE n 1 5 PRO n 1 6 VAL n 1 7 ARG n 1 8 GLY n 1 9 ALA n 1 10 ALA n 1 11 ILE n 1 12 PHE n 1 13 ASN n 1 14 GLU n 1 15 ASN n 1 16 LEU n 1 17 SER n 1 18 LYS n 1 19 ILE n 1 20 LEU n 1 21 LEU n 1 22 VAL n 1 23 GLN n 1 24 GLY n 1 25 THR n 1 26 GLU n 1 27 SER n 1 28 ASP n 1 29 SER n 1 30 TRP n 1 31 SER n 1 32 PHE n 1 33 PRO n 1 34 ARG n 1 35 GLY n 1 36 LYS n 1 37 ILE n 1 38 SER n 1 39 LYS n 1 40 ASP n 1 41 GLU n 1 42 ASN n 1 43 ASP n 1 44 ILE n 1 45 ASP n 1 46 CYS n 1 47 CYS n 1 48 ILE n 1 49 ARG n 1 50 GLU n 1 51 VAL n 1 52 LYS n 1 53 GLU n 1 54 GLU n 1 55 ILE n 1 56 GLY n 1 57 PHE n 1 58 ASP n 1 59 LEU n 1 60 THR n 1 61 ASP n 1 62 TYR n 1 63 ILE n 1 64 ASP n 1 65 ASP n 1 66 ASN n 1 67 GLN n 1 68 PHE n 1 69 ILE n 1 70 GLU n 1 71 ARG n 1 72 ASN n 1 73 ILE n 1 74 GLN n 1 75 GLY n 1 76 LYS n 1 77 ASN n 1 78 TYR n 1 79 LYS n 1 80 ILE n 1 81 PHE n 1 82 LEU n 1 83 ILE n 1 84 SER n 1 85 GLY n 1 86 VAL n 1 87 SER n 1 88 GLU n 1 89 VAL n 1 90 PHE n 1 91 ASN n 1 92 PHE n 1 93 LYS n 1 94 PRO n 1 95 GLN n 1 96 VAL n 1 97 ARG n 1 98 ASN n 1 99 GLU n 1 100 ILE n 1 101 ASP n 1 102 LYS n 1 103 ILE n 1 104 GLU n 1 105 TRP n 1 106 PHE n 1 107 ASP n 1 108 PHE n 1 109 LYS n 1 110 LYS n 1 111 ILE n 1 112 SER n 1 113 LYS n 1 114 THR n 1 115 MET n 1 116 TYR n 1 117 LYS n 1 118 SER n 1 119 ASN n 1 120 ILE n 1 121 LYS n 1 122 TYR n 1 123 TYR n 1 124 LEU n 1 125 ILE n 1 126 ASN n 1 127 SER n 1 128 MET n 1 129 MET n 1 130 ARG n 1 131 PRO n 1 132 LEU n 1 133 SER n 1 134 MET n 1 135 TRP n 1 136 LEU n 1 137 ARG n 1 138 HIS n 1 139 GLN n 1 140 ARG n 1 141 GLN n 1 142 ILE n 1 143 LYS n 1 144 ASN n 1 145 GLU n 1 146 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;baker's yeast ; _entity_src_gen.gene_src_genus Saccharomyces _entity_src_gen.pdbx_gene_src_gene 'DCP2, PSU1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET30a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCP2_YEAST _struct_ref.pdbx_db_accession P53550 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KKSIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKI FLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSNIKYYLINSMMRPLSMWLRHQRQIKNED ; _struct_ref.pdbx_align_begin 100 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JVB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 146 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P53550 _struct_ref_seq.db_align_beg 100 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 245 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 100 _struct_ref_seq.pdbx_auth_seq_align_end 245 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 2 '2D 1H-13C HSQC' 1 3 1 '2D 1H-1H TOCSY' 1 4 1 '2D 1H-1H NOESY' 1 5 3 '3D C(CO)NH' 1 6 4 '3D HNCO' 1 7 4 '3D HNCA' 1 8 4 '3D HNCACB' 1 9 4 '3D HN(CO)CA' 1 10 1 '3D 1H-15N NOESY' 1 11 4 '3D HN(COCA)CB' 1 12 3 '3D H(CCO)NH' 1 13 3 '3D C(CO)NH' 1 14 5 '3D 13C edited NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '500 uM [U-100% 15N] GB1-yDcp2, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '500 uM [U-100% 13C] GB1-yDcp2, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' '500 uM [U-100% 13C, 1H ILV only; U-100% 15N; 100% 2H] GB1-yDcp2, 90% H2O/10% D2O' 3 '90% H2O/10% D2O' '500 uM [U-100% 13C; U-100% 15N; 80% 2H] GB1-yDcp2, 90% H2O/10% D2O' 4 '90% H2O/10% D2O' '500 uM [U-100% 13C,1H Methyl groups of I L and V; 100% 2H] GB1-yDcp2, 90% H2O/10% D2O' 5 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 500 Bruker AVANCE 1 'Bruker Avance' 800 Bruker AVANCE 2 'Bruker Avance' 600 Varian INOVA 3 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2JVB _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JVB _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JVB _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_software.authors 'Brunger, A.T. et al.' _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name CNS _pdbx_nmr_software.version ? _pdbx_nmr_software.ordinal 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2JVB _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JVB _struct.title 'Solution Structure of Catalytic Domain of yDcp2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JVB _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Dcp2, mRNA decay, decapping, Cytoplasm, Hydrolase, Manganese, Metal-binding, mRNA processing, Nonsense-mediated mRNA decay, Nucleus, Phosphorylation, RNA-binding ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 42 ? ILE A 55 ? ASN A 141 ILE A 154 1 ? 14 HELX_P HELX_P2 2 PHE A 108 ? LYS A 113 ? PHE A 207 LYS A 212 1 ? 6 HELX_P HELX_P3 3 THR A 114 ? LYS A 117 ? THR A 213 LYS A 216 5 ? 4 HELX_P HELX_P4 4 TYR A 122 ? LYS A 143 ? TYR A 221 LYS A 242 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 34 ? GLY A 35 ? ARG A 133 GLY A 134 A 2 ARG A 7 ? ILE A 11 ? ARG A 106 ILE A 110 A 3 LYS A 76 ? ILE A 83 ? LYS A 175 ILE A 182 A 4 PHE A 68 ? ILE A 73 ? PHE A 167 ILE A 172 B 1 LYS A 18 ? VAL A 22 ? LYS A 117 VAL A 121 B 2 ILE A 103 ? ASP A 107 ? ILE A 202 ASP A 206 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 35 ? O GLY A 134 N ARG A 7 ? N ARG A 106 A 2 3 N GLY A 8 ? N GLY A 107 O LYS A 79 ? O LYS A 178 A 3 4 O LYS A 76 ? O LYS A 175 N ILE A 73 ? N ILE A 172 B 1 2 N ILE A 19 ? N ILE A 118 O PHE A 106 ? O PHE A 205 # _atom_sites.entry_id 2JVB _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 100 100 LYS LYS A . n A 1 2 LYS 2 101 101 LYS LYS A . n A 1 3 SER 3 102 102 SER SER A . n A 1 4 ILE 4 103 103 ILE ILE A . n A 1 5 PRO 5 104 104 PRO PRO A . n A 1 6 VAL 6 105 105 VAL VAL A . n A 1 7 ARG 7 106 106 ARG ARG A . n A 1 8 GLY 8 107 107 GLY GLY A . n A 1 9 ALA 9 108 108 ALA ALA A . n A 1 10 ALA 10 109 109 ALA ALA A . n A 1 11 ILE 11 110 110 ILE ILE A . n A 1 12 PHE 12 111 111 PHE PHE A . n A 1 13 ASN 13 112 112 ASN ASN A . n A 1 14 GLU 14 113 113 GLU GLU A . n A 1 15 ASN 15 114 114 ASN ASN A . n A 1 16 LEU 16 115 115 LEU LEU A . n A 1 17 SER 17 116 116 SER SER A . n A 1 18 LYS 18 117 117 LYS LYS A . n A 1 19 ILE 19 118 118 ILE ILE A . n A 1 20 LEU 20 119 119 LEU LEU A . n A 1 21 LEU 21 120 120 LEU LEU A . n A 1 22 VAL 22 121 121 VAL VAL A . n A 1 23 GLN 23 122 122 GLN GLN A . n A 1 24 GLY 24 123 123 GLY GLY A . n A 1 25 THR 25 124 124 THR THR A . n A 1 26 GLU 26 125 125 GLU GLU A . n A 1 27 SER 27 126 126 SER SER A . n A 1 28 ASP 28 127 127 ASP ASP A . n A 1 29 SER 29 128 128 SER SER A . n A 1 30 TRP 30 129 129 TRP TRP A . n A 1 31 SER 31 130 130 SER SER A . n A 1 32 PHE 32 131 131 PHE PHE A . n A 1 33 PRO 33 132 132 PRO PRO A . n A 1 34 ARG 34 133 133 ARG ARG A . n A 1 35 GLY 35 134 134 GLY GLY A . n A 1 36 LYS 36 135 135 LYS LYS A . n A 1 37 ILE 37 136 136 ILE ILE A . n A 1 38 SER 38 137 137 SER SER A . n A 1 39 LYS 39 138 138 LYS LYS A . n A 1 40 ASP 40 139 139 ASP ASP A . n A 1 41 GLU 41 140 140 GLU GLU A . n A 1 42 ASN 42 141 141 ASN ASN A . n A 1 43 ASP 43 142 142 ASP ASP A . n A 1 44 ILE 44 143 143 ILE ILE A . n A 1 45 ASP 45 144 144 ASP ASP A . n A 1 46 CYS 46 145 145 CYS CYS A . n A 1 47 CYS 47 146 146 CYS CYS A . n A 1 48 ILE 48 147 147 ILE ILE A . n A 1 49 ARG 49 148 148 ARG ARG A . n A 1 50 GLU 50 149 149 GLU GLU A . n A 1 51 VAL 51 150 150 VAL VAL A . n A 1 52 LYS 52 151 151 LYS LYS A . n A 1 53 GLU 53 152 152 GLU GLU A . n A 1 54 GLU 54 153 153 GLU GLU A . n A 1 55 ILE 55 154 154 ILE ILE A . n A 1 56 GLY 56 155 155 GLY GLY A . n A 1 57 PHE 57 156 156 PHE PHE A . n A 1 58 ASP 58 157 157 ASP ASP A . n A 1 59 LEU 59 158 158 LEU LEU A . n A 1 60 THR 60 159 159 THR THR A . n A 1 61 ASP 61 160 160 ASP ASP A . n A 1 62 TYR 62 161 161 TYR TYR A . n A 1 63 ILE 63 162 162 ILE ILE A . n A 1 64 ASP 64 163 163 ASP ASP A . n A 1 65 ASP 65 164 164 ASP ASP A . n A 1 66 ASN 66 165 165 ASN ASN A . n A 1 67 GLN 67 166 166 GLN GLN A . n A 1 68 PHE 68 167 167 PHE PHE A . n A 1 69 ILE 69 168 168 ILE ILE A . n A 1 70 GLU 70 169 169 GLU GLU A . n A 1 71 ARG 71 170 170 ARG ARG A . n A 1 72 ASN 72 171 171 ASN ASN A . n A 1 73 ILE 73 172 172 ILE ILE A . n A 1 74 GLN 74 173 173 GLN GLN A . n A 1 75 GLY 75 174 174 GLY GLY A . n A 1 76 LYS 76 175 175 LYS LYS A . n A 1 77 ASN 77 176 176 ASN ASN A . n A 1 78 TYR 78 177 177 TYR TYR A . n A 1 79 LYS 79 178 178 LYS LYS A . n A 1 80 ILE 80 179 179 ILE ILE A . n A 1 81 PHE 81 180 180 PHE PHE A . n A 1 82 LEU 82 181 181 LEU LEU A . n A 1 83 ILE 83 182 182 ILE ILE A . n A 1 84 SER 84 183 183 SER SER A . n A 1 85 GLY 85 184 184 GLY GLY A . n A 1 86 VAL 86 185 185 VAL VAL A . n A 1 87 SER 87 186 186 SER SER A . n A 1 88 GLU 88 187 187 GLU GLU A . n A 1 89 VAL 89 188 188 VAL VAL A . n A 1 90 PHE 90 189 189 PHE PHE A . n A 1 91 ASN 91 190 190 ASN ASN A . n A 1 92 PHE 92 191 191 PHE PHE A . n A 1 93 LYS 93 192 192 LYS LYS A . n A 1 94 PRO 94 193 193 PRO PRO A . n A 1 95 GLN 95 194 194 GLN GLN A . n A 1 96 VAL 96 195 195 VAL VAL A . n A 1 97 ARG 97 196 196 ARG ARG A . n A 1 98 ASN 98 197 197 ASN ASN A . n A 1 99 GLU 99 198 198 GLU GLU A . n A 1 100 ILE 100 199 199 ILE ILE A . n A 1 101 ASP 101 200 200 ASP ASP A . n A 1 102 LYS 102 201 201 LYS LYS A . n A 1 103 ILE 103 202 202 ILE ILE A . n A 1 104 GLU 104 203 203 GLU GLU A . n A 1 105 TRP 105 204 204 TRP TRP A . n A 1 106 PHE 106 205 205 PHE PHE A . n A 1 107 ASP 107 206 206 ASP ASP A . n A 1 108 PHE 108 207 207 PHE PHE A . n A 1 109 LYS 109 208 208 LYS LYS A . n A 1 110 LYS 110 209 209 LYS LYS A . n A 1 111 ILE 111 210 210 ILE ILE A . n A 1 112 SER 112 211 211 SER SER A . n A 1 113 LYS 113 212 212 LYS LYS A . n A 1 114 THR 114 213 213 THR THR A . n A 1 115 MET 115 214 214 MET MET A . n A 1 116 TYR 116 215 215 TYR TYR A . n A 1 117 LYS 117 216 216 LYS LYS A . n A 1 118 SER 118 217 217 SER SER A . n A 1 119 ASN 119 218 218 ASN ASN A . n A 1 120 ILE 120 219 219 ILE ILE A . n A 1 121 LYS 121 220 220 LYS LYS A . n A 1 122 TYR 122 221 221 TYR TYR A . n A 1 123 TYR 123 222 222 TYR TYR A . n A 1 124 LEU 124 223 223 LEU LEU A . n A 1 125 ILE 125 224 224 ILE ILE A . n A 1 126 ASN 126 225 225 ASN ASN A . n A 1 127 SER 127 226 226 SER SER A . n A 1 128 MET 128 227 227 MET MET A . n A 1 129 MET 129 228 228 MET MET A . n A 1 130 ARG 130 229 229 ARG ARG A . n A 1 131 PRO 131 230 230 PRO PRO A . n A 1 132 LEU 132 231 231 LEU LEU A . n A 1 133 SER 133 232 232 SER SER A . n A 1 134 MET 134 233 233 MET MET A . n A 1 135 TRP 135 234 234 TRP TRP A . n A 1 136 LEU 136 235 235 LEU LEU A . n A 1 137 ARG 137 236 236 ARG ARG A . n A 1 138 HIS 138 237 237 HIS HIS A . n A 1 139 GLN 139 238 238 GLN GLN A . n A 1 140 ARG 140 239 239 ARG ARG A . n A 1 141 GLN 141 240 240 GLN GLN A . n A 1 142 ILE 142 241 241 ILE ILE A . n A 1 143 LYS 143 242 242 LYS LYS A . n A 1 144 ASN 144 243 243 ASN ASN A . n A 1 145 GLU 145 244 244 GLU GLU A . n A 1 146 ASP 146 245 245 ASP ASP A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_spectrometer 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id GB1-yDcp2 500 uM '[U-100% 15N]' 1 GB1-yDcp2 500 uM '[U-100% 13C]' 2 GB1-yDcp2 500 uM '[U-100% 13C, 1H ILV only; U-100% 15N; 100% 2H]' 3 GB1-yDcp2 500 uM '[U-100% 13C; U-100% 15N; 80% 2H]' 4 GB1-yDcp2 500 uM '[U-100% 13C,1H Methyl groups of I L and V; 100% 2H]' 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HD22 A ASN 112 ? ? H A SER 116 ? ? 1.29 2 1 OD1 A ASP 164 ? ? H A ASN 165 ? ? 1.53 3 2 H A GLY 107 ? ? O A LYS 178 ? ? 1.53 4 2 O A LYS 209 ? ? H A THR 213 ? ? 1.55 5 2 O A ASP 142 ? ? H A CYS 146 ? ? 1.59 6 3 O A LYS 212 ? ? H A MET 214 ? ? 1.52 7 3 H A GLY 107 ? ? O A LYS 178 ? ? 1.56 8 4 OD1 A ASP 164 ? ? H A ASN 165 ? ? 1.51 9 5 O A TYR 221 ? ? H A ASN 225 ? ? 1.57 10 6 H A GLY 107 ? ? O A LYS 178 ? ? 1.58 11 7 H2 A LYS 100 ? ? H A LYS 101 ? ? 1.26 12 7 H A ILE 118 ? ? O A PHE 205 ? ? 1.54 13 8 OD1 A ASP 164 ? ? H A ASN 165 ? ? 1.53 14 8 H A GLY 107 ? ? O A LYS 178 ? ? 1.57 15 8 O A ASN 112 ? ? H A LEU 115 ? ? 1.58 16 9 O A ASN 112 ? ? H A LEU 115 ? ? 1.50 17 9 O A LYS 208 ? ? HG A SER 211 ? ? 1.56 18 9 H A GLY 107 ? ? O A LYS 178 ? ? 1.60 19 10 O A ILE 224 ? ? H A MET 228 ? ? 1.56 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 112 ? ? -58.64 172.68 2 1 SER A 126 ? ? -72.81 -102.68 3 1 THR A 159 ? ? -90.22 -61.61 4 1 VAL A 195 ? ? -129.15 -165.00 5 1 ARG A 196 ? ? -45.58 152.61 6 1 GLU A 198 ? ? -161.87 -113.65 7 1 TYR A 215 ? ? -72.17 22.71 8 1 ASN A 218 ? ? -137.02 -102.46 9 2 GLU A 125 ? ? -55.33 -176.76 10 2 SER A 126 ? ? -85.21 -76.85 11 2 ASP A 127 ? ? -109.54 75.82 12 2 THR A 159 ? ? -90.67 -61.70 13 2 GLU A 198 ? ? -172.53 -112.85 14 2 TYR A 215 ? ? -67.70 8.77 15 2 SER A 217 ? ? -132.29 -44.75 16 2 ASN A 218 ? ? -144.20 -39.56 17 2 ARG A 239 ? ? -47.24 -15.89 18 3 SER A 126 ? ? -68.23 -84.60 19 3 ASP A 127 ? ? -113.12 69.29 20 3 THR A 159 ? ? -91.07 -62.02 21 3 PRO A 193 ? ? -38.34 116.13 22 3 ASN A 197 ? ? -54.90 105.72 23 3 GLU A 198 ? ? -171.97 -113.70 24 3 THR A 213 ? ? -66.02 56.69 25 3 MET A 214 ? ? -95.51 -72.80 26 4 LYS A 101 ? ? -140.70 50.12 27 4 GLU A 125 ? ? -54.94 -172.04 28 4 SER A 126 ? ? -86.04 -120.93 29 4 GLU A 198 ? ? -157.89 -113.34 30 4 LYS A 212 ? ? -73.29 20.24 31 4 ASN A 218 ? ? -163.59 16.36 32 4 TYR A 222 ? ? -100.26 -73.52 33 5 GLU A 125 ? ? -47.02 157.53 34 5 SER A 126 ? ? -69.18 -70.03 35 5 ASN A 197 ? ? -46.21 102.56 36 5 GLU A 198 ? ? -147.30 -113.14 37 5 GLU A 244 ? ? 48.07 -120.66 38 6 LYS A 101 ? ? -108.65 79.90 39 6 VAL A 195 ? ? -130.23 -138.98 40 6 GLU A 198 ? ? -150.61 -113.53 41 6 TYR A 222 ? ? -101.49 -72.52 42 7 LYS A 101 ? ? -146.96 48.46 43 7 GLU A 125 ? ? -43.52 151.95 44 7 SER A 126 ? ? -61.46 -83.36 45 7 THR A 159 ? ? -90.31 -61.73 46 7 ASN A 197 ? ? -46.25 102.01 47 7 GLU A 198 ? ? -150.81 -113.45 48 8 GLU A 125 ? ? -47.39 156.87 49 8 GLU A 198 ? ? -172.65 -111.45 50 9 THR A 159 ? ? -90.47 -61.70 51 9 VAL A 195 ? ? -126.84 -166.43 52 9 ARG A 196 ? ? -46.84 150.50 53 9 GLU A 198 ? ? -171.37 -113.43 54 9 THR A 213 ? ? 51.13 7.85 55 10 ASN A 112 ? ? -47.23 151.93 56 10 ASP A 139 ? ? 77.70 38.15 57 10 GLU A 153 ? ? -91.61 -62.13 58 10 THR A 159 ? ? -90.40 -61.52 59 10 ASN A 197 ? ? -56.99 102.57 60 10 GLU A 198 ? ? -155.36 -113.26 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 245 ? O ? A ASP 146 O 2 2 Y 1 A ASP 245 ? O ? A ASP 146 O 3 3 Y 1 A ASP 245 ? O ? A ASP 146 O 4 4 Y 1 A ASP 245 ? O ? A ASP 146 O 5 5 Y 1 A ASP 245 ? O ? A ASP 146 O 6 6 Y 1 A ASP 245 ? O ? A ASP 146 O 7 7 Y 1 A ASP 245 ? O ? A ASP 146 O 8 8 Y 1 A ASP 245 ? O ? A ASP 146 O 9 9 Y 1 A ASP 245 ? O ? A ASP 146 O 10 10 Y 1 A ASP 245 ? O ? A ASP 146 O #