data_2JVD # _entry.id 2JVD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JVD pdb_00002jvd 10.2210/pdb2jvd/pdb RCSB RCSB100337 ? ? WWPDB D_1000100337 ? ? BMRB 15476 ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.content_type SR384 TargetDB . unspecified 15476 BMRB . unspecified 2HEP PDB 'Solution NMR structure of full length protein ynzC' unspecified # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2JVD _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-09-18 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Aramini, J.M.' 1 'Sharma, S.' 2 'Huang, Y.J.' 3 'Zhao, L.' 4 'Owens, L.A.' 5 'Stokes, K.' 6 'Jiang, M.' 7 'Xiao, R.' 8 'Baran, M.C.' 9 'Swapna, G.V.T.' 10 'Acton, T.B.' 11 'Montelione, G.T.' 12 'Northeast Structural Genomics Consortium (NESG)' 13 # _citation.id primary _citation.title 'Solution NMR structure of the SOS response protein YnzC from Bacillus subtilis.' _citation.journal_abbrev Proteins _citation.journal_volume 72 _citation.page_first 526 _citation.page_last 530 _citation.year 2008 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18431750 _citation.pdbx_database_id_DOI 10.1002/prot.22064 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Aramini, J.M.' 1 ? primary 'Sharma, S.' 2 ? primary 'Huang, Y.J.' 3 ? primary 'Swapna, G.V.' 4 ? primary 'Ho, C.K.' 5 ? primary 'Shetty, K.' 6 ? primary 'Cunningham, K.' 7 ? primary 'Ma, L.C.' 8 ? primary 'Zhao, L.' 9 ? primary 'Owens, L.A.' 10 ? primary 'Jiang, M.' 11 ? primary 'Xiao, R.' 12 ? primary 'Liu, J.' 13 ? primary 'Baran, M.C.' 14 ? primary 'Acton, T.B.' 15 ? primary 'Rost, B.' 16 ? primary 'Montelione, G.T.' 17 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'UPF0291 protein ynzC' _entity.formula_weight 6290.241 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Residues 1-46' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MISNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKLEHHHHHH _entity_poly.pdbx_seq_one_letter_code_can MISNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKLEHHHHHH _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier SR384 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 SER n 1 4 ASN n 1 5 ALA n 1 6 LYS n 1 7 ILE n 1 8 ALA n 1 9 ARG n 1 10 ILE n 1 11 ASN n 1 12 GLU n 1 13 LEU n 1 14 ALA n 1 15 ALA n 1 16 LYS n 1 17 ALA n 1 18 LYS n 1 19 ALA n 1 20 GLY n 1 21 VAL n 1 22 ILE n 1 23 THR n 1 24 GLU n 1 25 GLU n 1 26 GLU n 1 27 LYS n 1 28 ALA n 1 29 GLU n 1 30 GLN n 1 31 GLN n 1 32 LYS n 1 33 LEU n 1 34 ARG n 1 35 GLN n 1 36 GLU n 1 37 TYR n 1 38 LEU n 1 39 LYS n 1 40 GLY n 1 41 PHE n 1 42 ARG n 1 43 SER n 1 44 SER n 1 45 MET n 1 46 LYS n 1 47 LEU n 1 48 GLU n 1 49 HIS n 1 50 HIS n 1 51 HIS n 1 52 HIS n 1 53 HIS n 1 54 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene 'ynzC, BSU17880' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 168 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)MGK' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector SR384-1-46-21.1 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YNZC_BACSU _struct_ref.pdbx_db_accession O31818 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MISNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMK _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JVD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 46 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O31818 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 46 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 46 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2JVD LEU A 47 ? UNP O31818 ? ? 'expression tag' 47 1 1 2JVD GLU A 48 ? UNP O31818 ? ? 'expression tag' 48 2 1 2JVD HIS A 49 ? UNP O31818 ? ? 'expression tag' 49 3 1 2JVD HIS A 50 ? UNP O31818 ? ? 'expression tag' 50 4 1 2JVD HIS A 51 ? UNP O31818 ? ? 'expression tag' 51 5 1 2JVD HIS A 52 ? UNP O31818 ? ? 'expression tag' 52 6 1 2JVD HIS A 53 ? UNP O31818 ? ? 'expression tag' 53 7 1 2JVD HIS A 54 ? UNP O31818 ? ? 'expression tag' 54 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D HNCO' 1 4 1 '3D HN(CA)CO' 1 5 1 '3D HNCACB' 1 6 1 '3D HN(COCA)CB' 1 7 1 '3D HBHA(CO)NH' 1 8 1 '3D HCCH-COSY' 1 9 1 '3D CCH-TOCSY' 1 10 1 '3D simultaneous CN-NOESY' 1 11 1 '3D HNHA' 1 12 2 '2D 1H-13C HSQC stereospecific Leu/Val methyl' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;1.36 mM [U-100% 13C; U-100% 15N] SR384-1-46, 20 mM MES, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 95% H2O/5% D2O ; 1 '95% H2O/5% D2O' ;1.1 mM [U-5% 13C; U-100% 15N] SR384-1-46, 20 mM MES, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 95% H2O/5% D2O ; 2 '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker AVANCE 1 'Bruker Avance' 600 Varian INOVA 2 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2JVD _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;THE FINAL STRUCTURES ARE BASED ON A TOTAL OF 1022 CONFORMATIONALLY-RESTRICTING NOE-DERIVED DISTANCE CONSTRAINTS, 68 DIHEDRAL ANGLE CONSTRAINTS, AND 48 HYDROGEN BOND CONSTRAINTS (25.9 CONSTRAINTS PER RESIDUE, 4.4 LONG RANGE CONSTRAINTS PER RESIDUE, COMPUTED FOR RESIDUES 1 TO 48 BY PSVS 1.3). STRUCTURE DETERMINATION WAS PERFORMED ITERATIVELY USING CYANA 2.1. THE 20 STRUCTURES OUT OF 100 WITH THE LOWEST TARGET FUNCTION WERE FURTHER REFINED BY RESTRAINED MOLECULAR DYNAMICS/ENERGY MINIMIZATION IN EXPLICIT WATER (CNS) WITH PARAM19. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2JVD _pdbx_nmr_details.text ;THE PROTEIN IS MONOMERIC BY STATIC LIGHT SCATTERING. THE STRUCTURE WAS DETERMINED USING TRIPLE RESONANCE NMR SPECTROSCOPY. AUTOMATED BACKBONE ASSIGNMENTS WERE MADE USING AUTOASSIGN, AND THE SIDE CHAIN ASSIGNMENTS WERE COMPLETED MANUALLY. AUTOMATIC NOESY ASSIGNMENTS WERE DETERMINED USING CYANA 2.1. DIHEDRAL ANGLE CONSTRAINTS WERE OBTAINED FROM TALOS. HYDROGEN BOND CONSTRAINTS WERE DETERMINED USING BOTH AUTOSTRUCTURE AND CYANA, AND WERE APPLIED ONLY IN THE FINAL REFINEMENT STAGE (CNS) OF THE STRUCTURE DETERMINATION. COMPLETENESS OF NMR ASSIGNMENTS (EXCLUDING C-TERMINAL HHHHHH): BACKBONE, 98.8%, SIDE CHAIN, 96.9%, AROMATICS, 100%, STEREOSPECIFIC METHYL, 100%, STEREOSPECIFIC SIDE CHAIN NH2: 100%. FINAL STRUCTURE QUALITY FACTORS (FOR RESIDUES 1 TO 48, PSVS 1.3), WHERE ORDERED RESIDUES [S(PHI) + S(PSI) > 1.8] COMPRISE: 2-38: (A) RMSD (ORDERED RESIDUES): BB, 0.4, HEAVY ATOM, 0.9. (B) RAMACHANDRAN STATISTICS FOR ORDERED RESIDUES: MOST FAVORED, 98.6%, ADDITIONALLY ALLOWED, 1.4%, GENEROUSLY ALLOWED, 0.0%, DISALLOWED, 0.0%. (C) PROCHECK SCORES FOR ORDERED RESIDUES (RAW/Z-): PHI-PSI, 0.53/2.40, ALL, 0.50/2.96. (D) MOLPROBITY CLASH SCORE (RAW/Z-): 15.44/-1.12. (E) RPF SCORES FOR GOODNESS OF FIT TO NOESY DATA (RESIDUES 1-48): RECALL, 0.988, PRECISION, 0.944, F-MEASURE, 0.966, DP-SCORE, 0.822. (F) NUMBER OF CLOSE CONTACTS PER 20 MODELS: NONE. THE C- TERMINAL HIS TAG RESIDUES OF THE PROTEIN (HHHHHH) WERE NOT INCLUDED IN THE STRUCTURE CALCULATIONS AND HAVE BEEN OMITTED FROM THIS DEPOSITION. COORDINATES FOR THE FOLLOWING RESIDUES ARE NOT WELL DETERMINED [S(PHI) + S(PSI) < 1.8]: 1,39-48. ; # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation 0.00 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JVD _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation 0.0 _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.31 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method PDBStat # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JVD _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin 1.3 1 'Zimmerman, Moseley, Kulikowski and Montelione' 'chemical shift assignment' AutoAssign 2.4.0 2 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 2.1 3 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe 2.3 4 'Huang, Tejero, Powers and Montelione' 'data analysis' AutoStructure 2.1.1 5 'Huang, Tejero, Powers and Montelione' 'rpf calculation' AutoStructure 2.1.1 6 'Bhattacharya and Montelione' 'structure validation' PSVS 1.3 7 'Tejero and Montelione' 'pdb analysis' PdbStat 5.0 8 'Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss' 'structure validation' Procheck ? 9 Richardson 'structure validation' MolProbity ? 10 Goddard 'peak picking' Sparky 3.110 11 Goddard 'data analysis' Sparky 3.110 12 Varian collection VNMR 6.1C 13 'Guntert, Mumenthaler and Wuthrich' refinement CYANA 2.1 14 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2JVD _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JVD _struct.title ;Solution NMR structure of the folded N-terminal fragment of UPF0291 protein ynzC from Bacillus subtilis. Northeast Structural Genomics target SR384-1-46 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JVD _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;solution NMR structure, construct optimization, Cytoplasm, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? GLY A 20 ? SER A 3 GLY A 20 1 ? 18 HELX_P HELX_P2 2 THR A 23 ? LYS A 39 ? THR A 23 LYS A 39 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2JVD _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 MET 45 45 45 MET MET A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 HIS 49 49 ? ? ? A . n A 1 50 HIS 50 50 ? ? ? A . n A 1 51 HIS 51 51 ? ? ? A . n A 1 52 HIS 52 52 ? ? ? A . n A 1 53 HIS 53 53 ? ? ? A . n A 1 54 HIS 54 54 ? ? ? A . n # _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center NESG _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-19 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 4 'Structure model' 'Database references' 7 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' pdbx_struct_assembly 6 3 'Structure model' pdbx_struct_oper_list 7 3 'Structure model' struct_ref_seq_dif 8 4 'Structure model' database_2 9 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 3 'Structure model' '_pdbx_nmr_software.name' 3 3 'Structure model' '_pdbx_nmr_spectrometer.model' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0.00 _pdbx_nmr_ensemble_rms.distance_rms_dev_error ? _pdbx_nmr_ensemble_rms.entry_id 2JVD _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id SR384-1-46 1.36 mM '[U-100% 13C; U-100% 15N]' 1 MES 20 mM ? 1 'sodium chloride' 100 mM ? 1 DTT 10 mM ? 1 'calcium chloride' 5 mM ? 1 'sodium azide' 0.02 % ? 1 SR384-1-46 1.1 mM '[U-5% 13C; U-100% 15N]' 2 MES 20 mM ? 2 'sodium chloride' 100 mM ? 2 DTT 10 mM ? 2 'calcium chloride' 5 mM ? 2 'sodium azide' 0.02 % ? 2 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2JVD _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1040 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 328 _pdbx_nmr_constraints.NOE_long_range_total_count 196 _pdbx_nmr_constraints.NOE_medium_range_total_count 315 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 201 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count 0 _pdbx_nmr_constraints.protein_other_angle_constraints_total_count 0 _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 66 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 66 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 39 ? ? -50.07 99.65 2 3 LYS A 39 ? ? -60.63 90.65 3 4 LYS A 39 ? ? -63.07 90.44 4 4 LEU A 47 ? ? -164.26 16.45 5 5 SER A 44 ? ? 57.21 11.43 6 5 LYS A 46 ? ? 57.94 89.79 7 7 LYS A 39 ? ? -58.02 100.72 8 8 LYS A 39 ? ? -58.52 91.85 9 9 SER A 43 ? ? 61.62 -73.55 10 9 SER A 44 ? ? 40.78 28.79 11 10 LEU A 38 ? ? -81.27 -78.10 12 10 LEU A 47 ? ? 76.05 -16.12 13 11 LYS A 39 ? ? -56.53 106.85 14 12 LYS A 39 ? ? -57.74 95.78 15 13 LYS A 39 ? ? 61.23 86.37 16 13 ARG A 42 ? ? 72.06 -56.97 17 13 SER A 44 ? ? 59.42 18.61 18 13 LYS A 46 ? ? -84.88 42.62 19 15 LYS A 39 ? ? -64.18 96.29 20 15 ARG A 42 ? ? -59.79 -4.87 21 16 LYS A 39 ? ? -56.39 92.42 22 17 LYS A 39 ? ? -60.14 91.22 23 17 LYS A 46 ? ? 60.67 91.89 24 17 LEU A 47 ? ? -173.70 107.42 25 18 LYS A 39 ? ? -57.97 99.51 26 18 SER A 43 ? ? 70.40 -48.53 27 18 SER A 44 ? ? -69.29 97.95 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 49 ? A HIS 49 2 1 Y 1 A HIS 50 ? A HIS 50 3 1 Y 1 A HIS 51 ? A HIS 51 4 1 Y 1 A HIS 52 ? A HIS 52 5 1 Y 1 A HIS 53 ? A HIS 53 6 1 Y 1 A HIS 54 ? A HIS 54 7 2 Y 1 A HIS 49 ? A HIS 49 8 2 Y 1 A HIS 50 ? A HIS 50 9 2 Y 1 A HIS 51 ? A HIS 51 10 2 Y 1 A HIS 52 ? A HIS 52 11 2 Y 1 A HIS 53 ? A HIS 53 12 2 Y 1 A HIS 54 ? A HIS 54 13 3 Y 1 A HIS 49 ? A HIS 49 14 3 Y 1 A HIS 50 ? A HIS 50 15 3 Y 1 A HIS 51 ? A HIS 51 16 3 Y 1 A HIS 52 ? A HIS 52 17 3 Y 1 A HIS 53 ? A HIS 53 18 3 Y 1 A HIS 54 ? A HIS 54 19 4 Y 1 A HIS 49 ? A HIS 49 20 4 Y 1 A HIS 50 ? A HIS 50 21 4 Y 1 A HIS 51 ? A HIS 51 22 4 Y 1 A HIS 52 ? A HIS 52 23 4 Y 1 A HIS 53 ? A HIS 53 24 4 Y 1 A HIS 54 ? A HIS 54 25 5 Y 1 A HIS 49 ? A HIS 49 26 5 Y 1 A HIS 50 ? A HIS 50 27 5 Y 1 A HIS 51 ? A HIS 51 28 5 Y 1 A HIS 52 ? A HIS 52 29 5 Y 1 A HIS 53 ? A HIS 53 30 5 Y 1 A HIS 54 ? A HIS 54 31 6 Y 1 A HIS 49 ? A HIS 49 32 6 Y 1 A HIS 50 ? A HIS 50 33 6 Y 1 A HIS 51 ? A HIS 51 34 6 Y 1 A HIS 52 ? A HIS 52 35 6 Y 1 A HIS 53 ? A HIS 53 36 6 Y 1 A HIS 54 ? A HIS 54 37 7 Y 1 A HIS 49 ? A HIS 49 38 7 Y 1 A HIS 50 ? A HIS 50 39 7 Y 1 A HIS 51 ? A HIS 51 40 7 Y 1 A HIS 52 ? A HIS 52 41 7 Y 1 A HIS 53 ? A HIS 53 42 7 Y 1 A HIS 54 ? A HIS 54 43 8 Y 1 A HIS 49 ? A HIS 49 44 8 Y 1 A HIS 50 ? A HIS 50 45 8 Y 1 A HIS 51 ? A HIS 51 46 8 Y 1 A HIS 52 ? A HIS 52 47 8 Y 1 A HIS 53 ? A HIS 53 48 8 Y 1 A HIS 54 ? A HIS 54 49 9 Y 1 A HIS 49 ? A HIS 49 50 9 Y 1 A HIS 50 ? A HIS 50 51 9 Y 1 A HIS 51 ? A HIS 51 52 9 Y 1 A HIS 52 ? A HIS 52 53 9 Y 1 A HIS 53 ? A HIS 53 54 9 Y 1 A HIS 54 ? A HIS 54 55 10 Y 1 A HIS 49 ? A HIS 49 56 10 Y 1 A HIS 50 ? A HIS 50 57 10 Y 1 A HIS 51 ? A HIS 51 58 10 Y 1 A HIS 52 ? A HIS 52 59 10 Y 1 A HIS 53 ? A HIS 53 60 10 Y 1 A HIS 54 ? A HIS 54 61 11 Y 1 A HIS 49 ? A HIS 49 62 11 Y 1 A HIS 50 ? A HIS 50 63 11 Y 1 A HIS 51 ? A HIS 51 64 11 Y 1 A HIS 52 ? A HIS 52 65 11 Y 1 A HIS 53 ? A HIS 53 66 11 Y 1 A HIS 54 ? A HIS 54 67 12 Y 1 A HIS 49 ? A HIS 49 68 12 Y 1 A HIS 50 ? A HIS 50 69 12 Y 1 A HIS 51 ? A HIS 51 70 12 Y 1 A HIS 52 ? A HIS 52 71 12 Y 1 A HIS 53 ? A HIS 53 72 12 Y 1 A HIS 54 ? A HIS 54 73 13 Y 1 A HIS 49 ? A HIS 49 74 13 Y 1 A HIS 50 ? A HIS 50 75 13 Y 1 A HIS 51 ? A HIS 51 76 13 Y 1 A HIS 52 ? A HIS 52 77 13 Y 1 A HIS 53 ? A HIS 53 78 13 Y 1 A HIS 54 ? A HIS 54 79 14 Y 1 A HIS 49 ? A HIS 49 80 14 Y 1 A HIS 50 ? A HIS 50 81 14 Y 1 A HIS 51 ? A HIS 51 82 14 Y 1 A HIS 52 ? A HIS 52 83 14 Y 1 A HIS 53 ? A HIS 53 84 14 Y 1 A HIS 54 ? A HIS 54 85 15 Y 1 A HIS 49 ? A HIS 49 86 15 Y 1 A HIS 50 ? A HIS 50 87 15 Y 1 A HIS 51 ? A HIS 51 88 15 Y 1 A HIS 52 ? A HIS 52 89 15 Y 1 A HIS 53 ? A HIS 53 90 15 Y 1 A HIS 54 ? A HIS 54 91 16 Y 1 A HIS 49 ? A HIS 49 92 16 Y 1 A HIS 50 ? A HIS 50 93 16 Y 1 A HIS 51 ? A HIS 51 94 16 Y 1 A HIS 52 ? A HIS 52 95 16 Y 1 A HIS 53 ? A HIS 53 96 16 Y 1 A HIS 54 ? A HIS 54 97 17 Y 1 A HIS 49 ? A HIS 49 98 17 Y 1 A HIS 50 ? A HIS 50 99 17 Y 1 A HIS 51 ? A HIS 51 100 17 Y 1 A HIS 52 ? A HIS 52 101 17 Y 1 A HIS 53 ? A HIS 53 102 17 Y 1 A HIS 54 ? A HIS 54 103 18 Y 1 A HIS 49 ? A HIS 49 104 18 Y 1 A HIS 50 ? A HIS 50 105 18 Y 1 A HIS 51 ? A HIS 51 106 18 Y 1 A HIS 52 ? A HIS 52 107 18 Y 1 A HIS 53 ? A HIS 53 108 18 Y 1 A HIS 54 ? A HIS 54 109 19 Y 1 A HIS 49 ? A HIS 49 110 19 Y 1 A HIS 50 ? A HIS 50 111 19 Y 1 A HIS 51 ? A HIS 51 112 19 Y 1 A HIS 52 ? A HIS 52 113 19 Y 1 A HIS 53 ? A HIS 53 114 19 Y 1 A HIS 54 ? A HIS 54 115 20 Y 1 A HIS 49 ? A HIS 49 116 20 Y 1 A HIS 50 ? A HIS 50 117 20 Y 1 A HIS 51 ? A HIS 51 118 20 Y 1 A HIS 52 ? A HIS 52 119 20 Y 1 A HIS 53 ? A HIS 53 120 20 Y 1 A HIS 54 ? A HIS 54 #