HEADER IMMUNE SYSTEM 20-SEP-07 2JVH TITLE STRUCTURE OF C3-BINDING DOMAIN 4 OF S. AUREUS PROTEIN SBI COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG-BINDING PROTEIN SBI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 198-266; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: SBI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PHIS PARALLEL VECTOR KEYWDS THREE HELIX BUNDLE, IMMUNE SYSTEM EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR A.UPADHYAY,J.BURMAN,E.A.CLARK,J.M.H.VAN DEN ELSEN,S.BAGBY REVDAT 4 01-MAY-24 2JVH 1 REMARK SEQADV REVDAT 3 22-SEP-10 2JVH 1 JRNL REVDAT 2 24-FEB-09 2JVH 1 VERSN REVDAT 1 10-JUN-08 2JVH 0 JRNL AUTH A.UPADHYAY,J.D.BURMAN,E.A.CLARK,E.LEUNG,D.E.ISENMAN, JRNL AUTH 2 J.M.VAN DEN ELSEN,S.BAGBY JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF THE C3 BINDING REGION OF JRNL TITL 2 STAPHYLOCOCCUS AUREUS IMMUNE SUBVERSION PROTEIN SBI. JRNL REF J.BIOL.CHEM. V. 283 22113 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18550524 JRNL DOI 10.1074/JBC.M802636200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, PROCHECKNMR REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), LASKOWSKI AND MACARTHUR (PROCHECKNMR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINE.PY IN XPLOR-NIH REMARK 4 REMARK 4 2JVH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000100341. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 289; 289 REMARK 210 PH : 5.5; 5.5 REMARK 210 IONIC STRENGTH : 0.102; 0.102 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 5 MM MES, 100 MM SODIUM REMARK 210 CHLORIDE, 1 MM EDTA, 1 MM REMARK 210 BENZAMIDINE, 90% H2O/10% D2O; 5 REMARK 210 MM MES, 100 MM SODIUM CHLORIDE, REMARK 210 1 MM EDTA, 1 MM BENZAMIDINE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-15N TOCSY; 3D HNHA; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HNCO; REMARK 210 3D HN(CA)CO; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HBHA(CO)NH; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR, NMRDRAW, ANALYSIS, X-PLOR REMARK 210 NIH, TALOS, PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H2 GLY A 195 H ALA A 196 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 197 -5.39 -58.94 REMARK 500 GLU A 201 6.39 -63.11 REMARK 500 LYS A 245 -84.90 -75.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GOM RELATED DB: PDB REMARK 900 S AUREUS PROTEIN EFB REMARK 900 RELATED ID: 2NOJ RELATED DB: PDB REMARK 900 EHP-C3D COMPLEX REMARK 900 RELATED ID: 2QFF RELATED DB: PDB REMARK 900 S AUREUS PROTEIN SCIN REMARK 900 RELATED ID: 2JVG RELATED DB: PDB REMARK 900 SBI4 ENSEMBLE DBREF 2JVH A 198 266 UNP Q99RL2 Q99RL2_STAAN 198 266 SEQADV 2JVH GLY A 195 UNP Q99RL2 EXPRESSION TAG SEQADV 2JVH ALA A 196 UNP Q99RL2 EXPRESSION TAG SEQADV 2JVH MET A 197 UNP Q99RL2 EXPRESSION TAG SEQRES 1 A 72 GLY ALA MET VAL SER ILE GLU LYS ALA ILE VAL ARG HIS SEQRES 2 A 72 ASP GLU ARG VAL LYS SER ALA ASN ASP ALA ILE SER LYS SEQRES 3 A 72 LEU ASN GLU LYS ASP SER ILE GLU ASN ARG ARG LEU ALA SEQRES 4 A 72 GLN ARG GLU VAL ASN LYS ALA PRO MET ASP VAL LYS GLU SEQRES 5 A 72 HIS LEU GLN LYS GLN LEU ASP ALA LEU VAL ALA GLN LYS SEQRES 6 A 72 ASP ALA GLU LYS LYS VAL ALA HELIX 1 1 GLU A 201 LYS A 224 1 24 HELIX 2 2 SER A 226 ASN A 238 1 13 HELIX 3 3 LYS A 239 ALA A 240 5 2 HELIX 4 4 PRO A 241 ASP A 243 5 3 HELIX 5 5 VAL A 244 LYS A 263 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000