HEADER TRANSFERASE 20-SEP-07 2JVI TITLE NMR SOLUTION STRUCTURE OF THE HYPER-SPORULATION RESPONSE REGULATOR TITLE 2 SPO0F MUTANT H101A FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPORULATION INITIATION PHOSPHOTRANSFERASE F; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: STAGE 0 SPORULATION PROTEIN F; COMPND 5 EC: 2.7.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: SPO0F; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE)3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-20B KEYWDS RESPONSE REGULATOR, TWO-COMPONENT SYSTEMS, BACTERIAL SIGNAL KEYWDS 2 TRANSDUCTION, PHOSPHO-RELAY, (BETA/ALPHA)5 PROTEIN, CYTOPLASM, KEYWDS 3 KINASE, MAGNESIUM, METAL-BINDING, PHOSPHORYLATION, SPORULATION, KEYWDS 4 TRANSFERASE, TWO-COMPONENT REGULATORY SYSTEM EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR B.G.BOBAY,P.D.MCLAUGHLIN,R.J.THOMPSON,J.A.HOCH,J.CAVANAGH REVDAT 3 20-OCT-21 2JVI 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JVI 1 VERSN REVDAT 1 05-FEB-08 2JVI 0 JRNL AUTH B.G.BOBAY,R.A.WHITE,H.SZURMANT,D.M.SULLIVAN,P.D.MCLAUGHLIN, JRNL AUTH 2 T.HWA,J.A.HOCH,J.CAVANAGH JRNL TITL COVARIANCE IDENTIFIES DYNAMIC RESIDUES AT THE INTERFACES IN JRNL TITL 2 PROTEIN/PROTEIN COMPLEXES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, ARIA 1.2 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), LINGE, O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JVI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000100342. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 25 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 25 MM TRIS, 50 MM POTASSIUM REMARK 210 CHLORIDE, 0.02 % SODIUM AZIDE, 1 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 90% H2O/10% D2O; 25 MM REMARK 210 TRIS, 50 MM POTASSIUM CHLORIDE, REMARK 210 0.02 % SODIUM AZIDE, 1 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D HN(CO)CA; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N TOCSY; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0, ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 ASP A 11 HA PRO A 58 1.14 REMARK 500 HB3 GLU A 26 HA SER A 123 1.17 REMARK 500 H ASP A 11 HG3 PRO A 58 1.26 REMARK 500 HG22 ILE A 79 HG1 THR A 100 1.31 REMARK 500 HH11 ARG A 16 HB2 GLN A 32 1.35 REMARK 500 OD1 ASP A 113 HZ1 LYS A 116 1.58 REMARK 500 O LYS A 122 HG SER A 123 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 6 TYR A 28 CE1 TYR A 28 CZ -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 4 101.92 69.57 REMARK 500 1 TYR A 13 -19.67 -48.47 REMARK 500 1 ILE A 57 -22.87 -152.91 REMARK 500 1 ASP A 73 88.93 -157.94 REMARK 500 1 ILE A 79 72.40 -119.72 REMARK 500 1 TYR A 84 30.86 72.84 REMARK 500 1 LEU A 87 -169.04 54.38 REMARK 500 1 ASP A 88 -97.62 58.08 REMARK 500 1 SER A 93 -74.80 -54.08 REMARK 500 1 ALA A 103 -168.43 -121.68 REMARK 500 1 ILE A 108 -54.41 63.06 REMARK 500 1 LEU A 121 -65.48 -105.44 REMARK 500 1 LYS A 122 -57.97 -136.39 REMARK 500 1 SER A 123 171.12 60.26 REMARK 500 1 ASN A 124 -108.42 70.73 REMARK 500 1 LEU A 125 -43.27 -179.78 REMARK 500 1 HIS A 127 -169.69 60.15 REMARK 500 2 MET A 2 164.80 66.16 REMARK 500 2 ASN A 3 19.56 -149.40 REMARK 500 2 GLU A 4 102.37 69.83 REMARK 500 2 TYR A 13 -16.08 -47.94 REMARK 500 2 ARG A 47 65.02 62.93 REMARK 500 2 ILE A 57 -19.96 -179.83 REMARK 500 2 PRO A 58 -54.43 -26.81 REMARK 500 2 ASP A 73 83.48 -156.04 REMARK 500 2 GLU A 74 2.56 -69.99 REMARK 500 2 ILE A 79 71.07 -117.87 REMARK 500 2 ALA A 83 64.22 -58.37 REMARK 500 2 TYR A 84 3.66 59.67 REMARK 500 2 LEU A 87 -177.19 64.81 REMARK 500 2 ASP A 88 -92.82 62.17 REMARK 500 2 PRO A 105 97.89 -68.29 REMARK 500 2 ILE A 108 -66.73 49.18 REMARK 500 2 LEU A 121 -70.10 -125.67 REMARK 500 2 LYS A 122 -63.04 -133.79 REMARK 500 2 SER A 123 -89.32 37.52 REMARK 500 2 LEU A 125 44.62 -82.39 REMARK 500 2 HIS A 127 -67.45 -127.85 REMARK 500 3 TYR A 13 -13.72 -48.09 REMARK 500 3 ASN A 20 -70.09 -49.94 REMARK 500 3 ARG A 47 67.83 62.88 REMARK 500 3 ILE A 57 -28.60 174.81 REMARK 500 3 PRO A 58 -59.83 -18.31 REMARK 500 3 ASP A 73 95.32 -164.89 REMARK 500 3 ILE A 79 72.85 -116.40 REMARK 500 3 ALA A 83 63.43 -65.11 REMARK 500 3 GLU A 86 -89.66 -65.61 REMARK 500 3 LEU A 87 -167.76 -177.53 REMARK 500 3 ASP A 88 -89.69 43.99 REMARK 500 3 ILE A 108 -54.67 71.34 REMARK 500 REMARK 500 THIS ENTRY HAS 161 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15008 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT ASSIGNMENTS REMARK 900 RELATED ID: 1FSP RELATED DB: PDB REMARK 900 WILD-TYPE SPO0F REMARK 900 RELATED ID: 2JVJ RELATED DB: PDB REMARK 900 RELATED ID: 2JVK RELATED DB: PDB DBREF 2JVI A 1 124 UNP P06628 SP0F_BACSU 1 124 SEQADV 2JVI ALA A 101 UNP P06628 HIS 101 ENGINEERED MUTATION SEQADV 2JVI LEU A 125 UNP P06628 EXPRESSION TAG SEQADV 2JVI GLU A 126 UNP P06628 EXPRESSION TAG SEQADV 2JVI HIS A 127 UNP P06628 EXPRESSION TAG SEQADV 2JVI HIS A 128 UNP P06628 EXPRESSION TAG SEQADV 2JVI HIS A 129 UNP P06628 EXPRESSION TAG SEQADV 2JVI HIS A 130 UNP P06628 EXPRESSION TAG SEQADV 2JVI HIS A 131 UNP P06628 EXPRESSION TAG SEQADV 2JVI HIS A 132 UNP P06628 EXPRESSION TAG SEQRES 1 A 132 MET MET ASN GLU LYS ILE LEU ILE VAL ASP ASP GLN TYR SEQRES 2 A 132 GLY ILE ARG ILE LEU LEU ASN GLU VAL PHE ASN LYS GLU SEQRES 3 A 132 GLY TYR GLN THR PHE GLN ALA ALA ASN GLY LEU GLN ALA SEQRES 4 A 132 LEU ASP ILE VAL THR LYS GLU ARG PRO ASP LEU VAL LEU SEQRES 5 A 132 LEU ASP MET LYS ILE PRO GLY MET ASP GLY ILE GLU ILE SEQRES 6 A 132 LEU LYS ARG MET LYS VAL ILE ASP GLU ASN ILE ARG VAL SEQRES 7 A 132 ILE ILE MET THR ALA TYR GLY GLU LEU ASP MET ILE GLN SEQRES 8 A 132 GLU SER LYS GLU LEU GLY ALA LEU THR ALA PHE ALA LYS SEQRES 9 A 132 PRO PHE ASP ILE ASP GLU ILE ARG ASP ALA VAL LYS LYS SEQRES 10 A 132 TYR LEU PRO LEU LYS SER ASN LEU GLU HIS HIS HIS HIS SEQRES 11 A 132 HIS HIS HELIX 1 1 GLN A 12 GLY A 27 1 16 HELIX 2 2 ASN A 35 GLU A 46 1 12 HELIX 3 3 ASP A 61 ASP A 73 1 13 HELIX 4 4 ASP A 88 LEU A 96 1 9 HELIX 5 5 ILE A 108 LEU A 119 1 12 SHEET 1 A 5 GLN A 29 ALA A 33 0 SHEET 2 A 5 LYS A 5 VAL A 9 1 N ILE A 8 O ALA A 33 SHEET 3 A 5 LEU A 50 LEU A 53 1 O LEU A 52 N LEU A 7 SHEET 4 A 5 ARG A 77 MET A 81 1 O ILE A 79 N VAL A 51 SHEET 5 A 5 ALA A 98 PHE A 102 1 O LEU A 99 N VAL A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1