data_2JWH # _entry.id 2JWH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2JWH RCSB RCSB100377 WWPDB D_1000100377 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1XU6 'Structure of the C-terminal domain from Trypanosoma brucei Variant Surface Glycoprotein MITat1.2' unspecified PDB 2JWG . unspecified # _pdbx_database_status.entry_id 2JWH _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.deposit_site BMRB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-10-12 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jones, N.G.' 1 'Nietlispach, D.' 2 'Sharma, R.' 3 'Burke, D.F.' 4 'Eyres, I.' 5 'Mues, M.' 6 'Mott, H.R.' 7 'Carrington, M.' 8 # _citation.id primary _citation.title 'Structure of a Glycosylphosphatidylinositol-anchored Domain from a Trypanosome Variant Surface Glycoprotein' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 283 _citation.page_first 3584 _citation.page_last 3593 _citation.year 2008 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18003615 _citation.pdbx_database_id_DOI 10.1074/jbc.M706207200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Jones, N.G.' 1 primary 'Nietlispach, D.' 2 primary 'Sharma, R.' 3 primary 'Burke, D.F.' 4 primary 'Eyres, I.' 5 primary 'Mues, M.' 6 primary 'Mott, H.R.' 7 primary 'Carrington, M.' 8 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Variant surface glycoprotein ILTAT 1.24' _entity.formula_weight 4928.489 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'residues 445-491' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name VSG # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GTKASKSGVPVTQTQTAGADTTAEKCKGKGEKDCKSPDCKWEGGTCKD _entity_poly.pdbx_seq_one_letter_code_can GTKASKSGVPVTQTQTAGADTTAEKCKGKGEKDCKSPDCKWEGGTCKD _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 THR n 1 3 LYS n 1 4 ALA n 1 5 SER n 1 6 LYS n 1 7 SER n 1 8 GLY n 1 9 VAL n 1 10 PRO n 1 11 VAL n 1 12 THR n 1 13 GLN n 1 14 THR n 1 15 GLN n 1 16 THR n 1 17 ALA n 1 18 GLY n 1 19 ALA n 1 20 ASP n 1 21 THR n 1 22 THR n 1 23 ALA n 1 24 GLU n 1 25 LYS n 1 26 CYS n 1 27 LYS n 1 28 GLY n 1 29 LYS n 1 30 GLY n 1 31 GLU n 1 32 LYS n 1 33 ASP n 1 34 CYS n 1 35 LYS n 1 36 SER n 1 37 PRO n 1 38 ASP n 1 39 CYS n 1 40 LYS n 1 41 TRP n 1 42 GLU n 1 43 GLY n 1 44 GLY n 1 45 THR n 1 46 CYS n 1 47 LYS n 1 48 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Trypanosoma _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Trypanosoma brucei' _entity_src_gen.gene_src_strain brucei _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Trypanosoma brucei brucei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 trxB' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector plasmid _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code VSI4_TRYBB _struct_ref.pdbx_db_accession P26329 _struct_ref.pdbx_align_begin 445 _struct_ref.pdbx_seq_one_letter_code TKASKSGVPVTQTQTAGADTTAEKCKGKGEKDCKSPDCKWEGGTCKD _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JWH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 48 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P26329 _struct_ref_seq.db_align_beg 445 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 491 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 422 _struct_ref_seq.pdbx_auth_seq_align_end 468 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2JWH _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P26329 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 421 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.solution_id 1 _pdbx_nmr_exptl.type '2D 1H-1H NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.5 mM ILTat1.24 C2-domain, 50 mM sodium phosphate, 150 mM sodium chloride, 0.05 % sodium azide, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker DRX' # _pdbx_nmr_refine.entry_id 2JWH _pdbx_nmr_refine.method 'torsion angle dynamics, simulated annealing' _pdbx_nmr_refine.details '586 unambiguous and 42 ambiguous distance restraints' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 35 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JWH _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JWH _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Boucher processing AZARA ? 1 Kraulis 'data analysis' ANSIG ? 2 ;Linge, O'Donoghue and Nilges ; 'structure solution' ARIA ? 3 ;Linge, O'Donoghue and Nilges ; refinement ARIA ? 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2JWH _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JWH _struct.title 'Structure of a Glycosylphosphatidylinositol-anchored Domain from a Trypanosome Variant Surface Glycoprotein' _struct.pdbx_descriptor 'Variant surface glycoprotein ILTAT 1.24' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JWH _struct_keywords.pdbx_keywords 'Membrane Protein, Immune System' _struct_keywords.text 'Membrane Protein, Immune System, VSG type 1 C-terminal domain' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 39 SG ? ? A CYS 446 A CYS 459 1_555 ? ? ? ? ? ? ? 2.026 ? disulf2 disulf ? ? A CYS 34 SG ? ? ? 1_555 A CYS 46 SG ? ? A CYS 454 A CYS 466 1_555 ? ? ? ? ? ? ? 2.029 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 40 ? TRP A 41 ? LYS A 460 TRP A 461 A 2 CYS A 46 ? LYS A 47 ? CYS A 466 LYS A 467 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LYS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 40 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 460 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id LYS _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 47 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 467 # _atom_sites.entry_id 2JWH _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 421 421 GLY GLY A . n A 1 2 THR 2 422 422 THR THR A . n A 1 3 LYS 3 423 423 LYS LYS A . n A 1 4 ALA 4 424 424 ALA ALA A . n A 1 5 SER 5 425 425 SER SER A . n A 1 6 LYS 6 426 426 LYS LYS A . n A 1 7 SER 7 427 427 SER SER A . n A 1 8 GLY 8 428 428 GLY GLY A . n A 1 9 VAL 9 429 429 VAL VAL A . n A 1 10 PRO 10 430 430 PRO PRO A . n A 1 11 VAL 11 431 431 VAL VAL A . n A 1 12 THR 12 432 432 THR THR A . n A 1 13 GLN 13 433 433 GLN GLN A . n A 1 14 THR 14 434 434 THR THR A . n A 1 15 GLN 15 435 435 GLN GLN A . n A 1 16 THR 16 436 436 THR THR A . n A 1 17 ALA 17 437 437 ALA ALA A . n A 1 18 GLY 18 438 438 GLY GLY A . n A 1 19 ALA 19 439 439 ALA ALA A . n A 1 20 ASP 20 440 440 ASP ASP A . n A 1 21 THR 21 441 441 THR THR A . n A 1 22 THR 22 442 442 THR THR A . n A 1 23 ALA 23 443 443 ALA ALA A . n A 1 24 GLU 24 444 444 GLU GLU A . n A 1 25 LYS 25 445 445 LYS LYS A . n A 1 26 CYS 26 446 446 CYS CYS A . n A 1 27 LYS 27 447 447 LYS LYS A . n A 1 28 GLY 28 448 448 GLY GLY A . n A 1 29 LYS 29 449 449 LYS LYS A . n A 1 30 GLY 30 450 450 GLY GLY A . n A 1 31 GLU 31 451 451 GLU GLU A . n A 1 32 LYS 32 452 452 LYS LYS A . n A 1 33 ASP 33 453 453 ASP ASP A . n A 1 34 CYS 34 454 454 CYS CYS A . n A 1 35 LYS 35 455 455 LYS LYS A . n A 1 36 SER 36 456 456 SER SER A . n A 1 37 PRO 37 457 457 PRO PRO A . n A 1 38 ASP 38 458 458 ASP ASP A . n A 1 39 CYS 39 459 459 CYS CYS A . n A 1 40 LYS 40 460 460 LYS LYS A . n A 1 41 TRP 41 461 461 TRP TRP A . n A 1 42 GLU 42 462 462 GLU GLU A . n A 1 43 GLY 43 463 463 GLY GLY A . n A 1 44 GLY 44 464 464 GLY GLY A . n A 1 45 THR 45 465 465 THR THR A . n A 1 46 CYS 46 466 466 CYS CYS A . n A 1 47 LYS 47 467 467 LYS LYS A . n A 1 48 ASP 48 468 468 ASP ASP A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-13 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'ILTat1.24 C2-domain' 0.5 mM ? 1 'sodium phosphate' 50 mM ? 1 'sodium chloride' 150 mM ? 1 'sodium azide' 0.05 % ? 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 7 HG21 A THR 442 ? ? HG2 A GLU 444 ? ? 1.25 2 10 OE2 A GLU 444 ? ? HZ1 A LYS 447 ? ? 1.58 3 12 HZ1 A LYS 445 ? ? OD1 A ASP 468 ? ? 1.60 4 16 HZ2 A LYS 423 ? ? OE1 A GLU 444 ? ? 1.56 5 16 OE2 A GLU 444 ? ? HZ1 A LYS 447 ? ? 1.58 6 16 HZ2 A LYS 449 ? ? OD2 A ASP 458 ? ? 1.59 7 17 OD2 A ASP 440 ? ? HZ1 A LYS 467 ? ? 1.59 8 18 O A GLY 450 ? ? H A CYS 454 ? ? 1.57 9 18 HZ1 A LYS 445 ? ? OXT A ASP 468 ? ? 1.58 10 25 OE1 A GLU 462 ? ? HZ1 A LYS 467 ? ? 1.60 11 26 O A GLY 450 ? ? H A CYS 454 ? ? 1.55 12 28 HB2 A ALA 437 ? ? H A GLY 438 ? ? 1.34 13 29 HG2 A GLU 444 ? ? HB2 A LYS 467 ? ? 1.30 14 31 OE1 A GLU 462 ? ? HZ3 A LYS 467 ? ? 1.58 15 34 HZ2 A LYS 460 ? ? OXT A ASP 468 ? ? 1.55 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 423 ? ? -167.11 -31.93 2 1 ALA A 424 ? ? -149.52 -35.31 3 1 LYS A 426 ? ? -175.40 -34.51 4 1 SER A 427 ? ? 68.59 135.97 5 1 THR A 434 ? ? -171.58 141.31 6 1 GLN A 435 ? ? -142.98 47.76 7 1 ASP A 440 ? ? -78.10 36.86 8 1 THR A 441 ? ? 69.37 -57.91 9 1 GLU A 444 ? ? -76.10 28.07 10 2 ALA A 424 ? ? -89.09 45.43 11 2 SER A 427 ? ? -82.76 49.24 12 2 PRO A 430 ? ? -75.37 49.66 13 2 VAL A 431 ? ? -80.00 39.16 14 2 GLN A 433 ? ? -149.91 25.56 15 2 THR A 436 ? ? 72.00 -59.23 16 2 ALA A 439 ? ? -75.76 41.27 17 2 LYS A 445 ? ? -146.55 -39.06 18 2 LYS A 452 ? ? -82.45 37.50 19 2 ASP A 453 ? ? -152.73 -41.66 20 2 CYS A 454 ? ? -54.68 108.52 21 2 CYS A 459 ? ? -133.35 -148.63 22 3 SER A 425 ? ? -173.81 137.62 23 3 VAL A 429 ? ? 69.98 122.33 24 3 THR A 432 ? ? 48.46 -141.33 25 3 GLN A 433 ? ? 50.80 -95.40 26 3 THR A 434 ? ? 72.78 -58.29 27 3 THR A 436 ? ? -168.36 29.81 28 3 ALA A 439 ? ? 56.80 -141.70 29 3 THR A 441 ? ? -84.08 49.88 30 3 THR A 442 ? ? 66.14 86.58 31 3 ALA A 443 ? ? -75.64 42.12 32 3 CYS A 459 ? ? -162.99 -151.54 33 3 GLU A 462 ? ? -75.62 -72.21 34 3 LYS A 467 ? ? -177.27 126.97 35 4 THR A 422 ? ? -128.66 -143.02 36 4 VAL A 431 ? ? -149.61 58.16 37 4 THR A 432 ? ? 74.92 139.13 38 4 THR A 434 ? ? -97.38 50.78 39 4 GLN A 435 ? ? -81.89 -123.91 40 4 GLU A 444 ? ? -98.20 37.31 41 4 LYS A 452 ? ? -83.12 35.47 42 4 ASP A 453 ? ? -160.08 -50.92 43 4 GLU A 462 ? ? -170.15 131.97 44 5 LYS A 423 ? ? 73.43 -51.81 45 5 PRO A 430 ? ? -99.23 -142.96 46 5 THR A 432 ? ? 73.21 130.40 47 5 ALA A 437 ? ? 70.15 -47.42 48 5 ALA A 439 ? ? 68.60 130.15 49 5 THR A 465 ? ? -170.94 145.31 50 6 THR A 422 ? ? -152.07 32.72 51 6 SER A 425 ? ? -104.19 -150.56 52 6 GLN A 433 ? ? -155.80 46.56 53 6 ALA A 439 ? ? -152.92 39.01 54 6 ASP A 440 ? ? -144.95 50.61 55 6 THR A 442 ? ? 71.72 -47.28 56 6 GLU A 444 ? ? -161.05 43.86 57 6 GLU A 462 ? ? -86.75 -131.49 58 7 THR A 422 ? ? 66.54 73.91 59 7 ALA A 424 ? ? -165.94 -95.35 60 7 VAL A 429 ? ? 44.26 107.25 61 7 GLN A 433 ? ? -158.51 50.34 62 7 ALA A 437 ? ? -162.93 31.23 63 7 ALA A 443 ? ? -79.36 48.95 64 7 PRO A 457 ? ? -73.74 26.07 65 7 ASP A 458 ? ? -151.50 -43.23 66 7 THR A 465 ? ? -175.00 145.18 67 7 LYS A 467 ? ? -178.12 142.67 68 8 SER A 425 ? ? -74.86 36.61 69 8 LYS A 426 ? ? 178.71 -47.88 70 8 VAL A 429 ? ? 56.37 99.58 71 8 GLN A 435 ? ? 64.12 -131.85 72 8 THR A 436 ? ? -69.47 94.91 73 8 ALA A 439 ? ? -156.58 -136.62 74 8 THR A 442 ? ? -170.01 -151.92 75 8 GLU A 444 ? ? -168.12 47.50 76 9 LYS A 423 ? ? 72.07 142.16 77 9 LYS A 426 ? ? -175.50 -46.23 78 9 GLN A 433 ? ? -156.72 -57.41 79 9 GLN A 435 ? ? 67.13 -63.47 80 9 THR A 436 ? ? 51.02 -139.36 81 9 ALA A 437 ? ? 64.40 157.86 82 9 ALA A 439 ? ? -105.26 46.45 83 9 ASP A 440 ? ? 72.38 120.19 84 9 THR A 442 ? ? -162.95 114.93 85 9 CYS A 446 ? ? -166.86 -31.59 86 9 LYS A 455 ? ? -165.38 43.58 87 9 PRO A 457 ? ? -72.75 24.44 88 9 ASP A 458 ? ? -148.69 -27.86 89 9 LYS A 467 ? ? 178.07 137.87 90 10 LYS A 423 ? ? 71.26 -54.16 91 10 SER A 427 ? ? -162.60 41.17 92 10 VAL A 429 ? ? 69.89 112.38 93 10 PRO A 430 ? ? -82.17 44.80 94 10 THR A 432 ? ? 177.67 -31.00 95 10 GLN A 433 ? ? 73.74 -58.19 96 10 ALA A 437 ? ? 69.66 -53.61 97 10 ALA A 439 ? ? -171.41 123.49 98 10 ALA A 443 ? ? 57.10 -116.90 99 11 ALA A 424 ? ? -168.75 48.53 100 11 LYS A 445 ? ? -74.16 42.40 101 11 LYS A 449 ? ? -107.55 -169.38 102 11 SER A 456 ? ? 174.71 149.26 103 11 PRO A 457 ? ? -74.76 27.88 104 11 ASP A 458 ? ? -150.58 -43.36 105 12 ALA A 424 ? ? -151.65 -63.53 106 12 SER A 425 ? ? -170.09 -55.48 107 12 SER A 427 ? ? -171.59 69.52 108 12 GLN A 433 ? ? -151.06 -41.42 109 12 THR A 434 ? ? -81.16 37.73 110 12 THR A 442 ? ? -160.87 -51.75 111 12 CYS A 446 ? ? -148.79 18.80 112 13 SER A 425 ? ? -173.34 -133.59 113 13 VAL A 431 ? ? -84.94 35.20 114 13 THR A 434 ? ? -160.56 -46.78 115 13 GLN A 435 ? ? -84.66 44.14 116 13 GLU A 444 ? ? 68.28 62.09 117 13 LYS A 452 ? ? -83.52 42.04 118 13 ASP A 453 ? ? -160.62 -38.14 119 13 GLU A 462 ? ? -82.88 47.11 120 14 LYS A 423 ? ? -154.41 46.87 121 14 SER A 427 ? ? 66.97 123.86 122 14 GLN A 435 ? ? 70.63 123.65 123 14 THR A 442 ? ? -170.26 147.74 124 14 ALA A 443 ? ? -80.00 41.09 125 14 LYS A 447 ? ? 33.07 75.67 126 15 SER A 425 ? ? -156.69 -136.80 127 15 SER A 427 ? ? -162.24 -46.75 128 15 PRO A 430 ? ? -64.58 99.99 129 15 GLN A 433 ? ? 65.11 -62.95 130 15 LYS A 455 ? ? -141.91 33.28 131 15 ASP A 458 ? ? -161.01 36.81 132 16 LYS A 423 ? ? 69.82 -66.64 133 16 VAL A 431 ? ? -90.88 44.95 134 16 ALA A 437 ? ? -155.30 -47.21 135 16 ALA A 439 ? ? 70.76 -53.08 136 16 THR A 441 ? ? 70.03 -65.92 137 16 THR A 442 ? ? 176.54 -32.95 138 16 ALA A 443 ? ? 70.12 -56.84 139 16 GLU A 444 ? ? -78.63 37.64 140 17 THR A 422 ? ? -179.96 143.80 141 17 LYS A 426 ? ? -78.64 49.94 142 17 VAL A 431 ? ? -84.51 46.30 143 17 GLN A 435 ? ? -171.75 143.39 144 17 ALA A 437 ? ? 60.67 -143.87 145 17 ALA A 439 ? ? -172.42 127.59 146 17 THR A 442 ? ? -156.34 -19.87 147 17 ALA A 443 ? ? 60.83 -153.16 148 17 GLU A 444 ? ? -91.84 39.50 149 17 CYS A 446 ? ? -151.07 10.76 150 17 GLU A 462 ? ? -106.71 59.61 151 18 THR A 422 ? ? -87.32 -145.60 152 18 SER A 425 ? ? -93.41 41.96 153 18 LYS A 426 ? ? 67.45 118.13 154 18 PRO A 430 ? ? -88.73 45.07 155 18 THR A 432 ? ? 70.06 -68.08 156 18 GLN A 433 ? ? -143.89 -48.56 157 18 LYS A 452 ? ? -84.16 40.52 158 18 ASP A 453 ? ? -164.09 -50.39 159 18 LYS A 455 ? ? -144.61 45.95 160 18 ASP A 458 ? ? -148.25 37.90 161 19 ALA A 424 ? ? 58.43 -155.18 162 19 SER A 425 ? ? 64.03 176.84 163 19 LYS A 426 ? ? -82.88 46.10 164 19 VAL A 431 ? ? -81.19 49.90 165 19 THR A 432 ? ? 66.86 -75.05 166 19 GLN A 433 ? ? 52.28 -155.59 167 19 ALA A 437 ? ? -68.68 69.80 168 19 ALA A 439 ? ? -92.99 34.76 169 19 ALA A 443 ? ? 74.91 -32.87 170 20 ALA A 424 ? ? 63.76 -148.29 171 20 ALA A 439 ? ? 70.87 -32.86 172 20 THR A 442 ? ? 69.03 128.20 173 20 ALA A 443 ? ? -82.32 47.22 174 20 LYS A 452 ? ? -83.80 37.83 175 20 ASP A 453 ? ? -163.52 -50.13 176 21 THR A 422 ? ? 44.23 -128.88 177 21 ALA A 424 ? ? 73.41 137.43 178 21 SER A 427 ? ? -158.62 40.73 179 21 THR A 432 ? ? -92.59 44.54 180 21 ALA A 439 ? ? -162.53 36.66 181 21 THR A 441 ? ? 69.42 -57.07 182 21 LYS A 445 ? ? -137.32 -44.56 183 21 LYS A 449 ? ? -122.17 -50.71 184 22 ALA A 424 ? ? 68.36 -78.16 185 22 SER A 427 ? ? 73.42 -47.32 186 22 PRO A 430 ? ? -70.80 38.59 187 22 GLN A 433 ? ? -158.36 48.33 188 22 THR A 434 ? ? 53.64 -154.56 189 22 ALA A 437 ? ? 176.68 -54.48 190 22 ALA A 439 ? ? -164.25 43.46 191 22 THR A 441 ? ? -76.51 39.23 192 22 ALA A 443 ? ? 170.22 -42.28 193 22 LYS A 449 ? ? -93.45 -152.74 194 22 GLU A 462 ? ? -95.99 -65.64 195 23 LYS A 423 ? ? 55.97 -135.42 196 23 SER A 425 ? ? 61.04 71.53 197 23 SER A 427 ? ? -172.85 -41.41 198 23 VAL A 429 ? ? 34.72 65.02 199 23 PRO A 430 ? ? -76.78 43.80 200 23 THR A 432 ? ? -157.90 49.56 201 23 THR A 434 ? ? -84.35 43.62 202 23 THR A 436 ? ? -175.17 147.19 203 23 ALA A 437 ? ? -77.56 -155.50 204 23 ALA A 443 ? ? 66.94 -11.41 205 24 ALA A 424 ? ? 72.14 -53.68 206 24 LYS A 426 ? ? 55.27 -145.96 207 24 GLN A 433 ? ? 73.07 139.33 208 24 GLN A 435 ? ? 70.44 -81.25 209 24 THR A 436 ? ? 179.11 133.19 210 24 ALA A 437 ? ? 57.46 -136.40 211 24 THR A 441 ? ? 165.42 -28.34 212 24 LYS A 452 ? ? -79.15 38.65 213 24 ASP A 453 ? ? -166.22 -43.85 214 24 LYS A 455 ? ? -170.65 138.24 215 24 SER A 456 ? ? 170.04 142.15 216 24 GLU A 462 ? ? -103.87 55.83 217 24 THR A 465 ? ? -171.40 134.08 218 25 SER A 427 ? ? 71.72 145.42 219 25 GLN A 433 ? ? -135.43 -142.30 220 25 THR A 442 ? ? 69.13 -65.96 221 25 ALA A 443 ? ? -178.35 -45.08 222 25 GLU A 444 ? ? -155.54 45.22 223 25 LYS A 445 ? ? 73.63 -53.80 224 25 CYS A 446 ? ? 157.37 7.51 225 26 THR A 422 ? ? -143.05 38.72 226 26 LYS A 426 ? ? -83.56 42.73 227 26 GLN A 433 ? ? -164.40 118.90 228 26 GLN A 435 ? ? -179.28 133.79 229 26 ASP A 440 ? ? 72.64 -57.34 230 26 THR A 441 ? ? -169.32 26.91 231 26 LYS A 467 ? ? -172.93 -173.29 232 27 ALA A 424 ? ? -145.03 43.16 233 27 SER A 425 ? ? 62.15 -150.14 234 27 SER A 427 ? ? 66.41 140.40 235 27 THR A 432 ? ? 72.24 128.29 236 27 GLN A 433 ? ? -157.05 -53.03 237 27 THR A 441 ? ? 70.53 57.51 238 27 ALA A 443 ? ? -69.04 -90.50 239 27 GLU A 444 ? ? -77.05 24.86 240 27 LYS A 452 ? ? -86.57 37.60 241 27 ASP A 453 ? ? -157.06 -45.93 242 28 SER A 427 ? ? -90.82 -143.92 243 28 THR A 436 ? ? -175.46 66.27 244 28 ALA A 437 ? ? 60.52 -129.33 245 28 ALA A 439 ? ? 70.25 139.46 246 28 ASP A 440 ? ? -83.04 42.57 247 28 GLU A 444 ? ? -79.33 27.92 248 28 LYS A 447 ? ? 59.08 144.97 249 28 LYS A 449 ? ? -74.48 -152.21 250 29 SER A 425 ? ? -126.88 -84.63 251 29 GLN A 433 ? ? 47.36 -135.62 252 29 ALA A 437 ? ? -170.13 143.32 253 29 THR A 442 ? ? -175.88 -24.99 254 29 ALA A 443 ? ? 75.96 131.46 255 29 CYS A 446 ? ? -172.32 -26.21 256 29 GLU A 462 ? ? -81.52 -135.72 257 30 LYS A 423 ? ? 69.48 133.31 258 30 LYS A 426 ? ? -173.36 -45.51 259 30 VAL A 429 ? ? 55.90 135.53 260 30 PRO A 430 ? ? -76.21 35.20 261 30 GLN A 433 ? ? -143.55 36.27 262 30 GLN A 435 ? ? -134.07 -49.61 263 30 ALA A 439 ? ? 68.78 142.66 264 30 THR A 442 ? ? -100.35 52.83 265 30 GLU A 462 ? ? -85.33 -136.67 266 31 LYS A 423 ? ? -166.14 35.66 267 31 SER A 425 ? ? -151.71 -37.78 268 31 LYS A 426 ? ? -150.93 -136.57 269 31 VAL A 431 ? ? -84.43 38.16 270 31 GLN A 435 ? ? 64.73 124.60 271 31 THR A 436 ? ? -161.23 38.21 272 31 ALA A 437 ? ? -158.81 33.89 273 31 THR A 442 ? ? 70.28 -52.70 274 31 ALA A 443 ? ? 55.25 -141.21 275 31 SER A 456 ? ? 68.58 147.61 276 32 THR A 422 ? ? -82.34 -140.55 277 32 LYS A 423 ? ? -157.63 -54.61 278 32 SER A 425 ? ? 67.71 128.76 279 32 SER A 427 ? ? 59.73 86.66 280 32 GLN A 433 ? ? -144.03 -45.67 281 32 GLN A 435 ? ? -171.13 124.65 282 32 ALA A 437 ? ? 70.96 -48.40 283 32 ALA A 443 ? ? -82.93 39.45 284 33 LYS A 423 ? ? -161.07 35.30 285 33 ALA A 424 ? ? 69.60 145.93 286 33 VAL A 429 ? ? -177.12 126.90 287 33 THR A 436 ? ? 72.56 -38.72 288 33 ALA A 437 ? ? 61.16 -139.01 289 33 CYS A 454 ? ? -77.55 -157.73 290 33 PRO A 457 ? ? -77.57 29.07 291 33 ASP A 458 ? ? -158.52 -49.17 292 34 THR A 422 ? ? 54.06 115.02 293 34 GLN A 435 ? ? 62.21 -130.22 294 34 ALA A 437 ? ? 63.45 -143.29 295 34 THR A 441 ? ? -165.51 -41.55 296 34 GLU A 444 ? ? -59.98 108.37 297 34 LYS A 445 ? ? -75.91 49.00 298 34 CYS A 446 ? ? -141.85 -23.78 299 34 LYS A 447 ? ? -56.01 107.71 300 34 LYS A 452 ? ? -84.36 39.25 301 34 ASP A 453 ? ? -156.28 -44.51 302 35 THR A 422 ? ? -86.45 -142.94 303 35 LYS A 423 ? ? 70.30 138.93 304 35 SER A 425 ? ? -76.09 37.97 305 35 VAL A 431 ? ? -72.74 48.69 306 35 GLN A 433 ? ? 70.95 144.25 307 35 GLN A 435 ? ? -164.15 33.04 308 35 ALA A 437 ? ? -166.38 -39.22 309 35 ALA A 439 ? ? -150.29 -45.67 310 35 ALA A 443 ? ? -82.75 47.16 311 35 GLU A 462 ? ? -90.61 -60.50 #