HEADER VIRAL PROTEIN 12-OCT-07 2JWJ OBSLTE 05-FEB-08 2JWJ 2JZF TITLE NMR STRUCTURE OF THE DOMAIN 513-651 OF THE SARS-COV TITLE 2 NONSTRUCTURAL PROTEIN NSP3, SINGLE CONFORMER CLOSEST TO TITLE 3 THE MEAN COORDINATES OF AN ENSEMBLE OF TWENTY ENERGY TITLE 4 MINIMIZED CONFORMERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICASE POLYPROTEIN 1AB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NON-STRUCTURAL PROTEIN 3 (DOMAIN 513-651): COMPND 5 RESIDUES 1331-1469; COMPND 6 SYNONYM: PP1AB, ORF1AB POLYPROTEIN [INCLUDES: REPLICASE COMPND 7 POLYPROTEIN 1A, NON-STRUCTURAL PROTEINS 1,2,3,4, 3C-LIKE COMPND 8 PROTEINASE, NON-STRUCTURAL PROTEINS 6,7,8,9,10, RNA- COMPND 9 DIRECTED RNA POLYMERASE, HELICASE, EXORIBONUCLEASE, COMPND 10 URIDYLATE-SPECIFIC ENDORIBONUCLEASE, PUTATIVE 2'-O-METHYL COMPND 11 TRANSFERASE]; COMPND 12 EC: 3.4.22.-; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SARS CORONAVIRUS; SOURCE 3 ORGANISM_COMMON: VIRUS; SOURCE 4 GENE: REP, 1A-1B; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS SARS-COV, NONSTRUCTURAL PROTEIN, NSP3, VIRAL PROTEIN, FSPS, KEYWDS 2 JCSG, ATP-BINDING, CYTOPLASM, ENDONUCLEASE, EXONUCLEASE, KEYWDS 3 HELICASE, HYDROLASE, MEMBRANE, METAL-BINDING, NUCLEASE, KEYWDS 4 NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, PROTEASE, KEYWDS 5 RIBOSOMAL FRAMESHIFT, RNA REPLICATION, RNA-BINDING, RNA- KEYWDS 6 DIRECTED RNA POLYMERASE, THIOL PROTEASE, TRANSFERASE, KEYWDS 7 TRANSMEMBRANE, ZINC, ZINC-FINGER, STRUCTURAL GENOMICS, PSI- KEYWDS 8 2, PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR KEYWDS 9 STRUCTURAL GENOMICS EXPDTA NMR AUTHOR A.CHATTERJEE,M.A.JOHNSON,P.SERRANO,B.PEDRINI,K.WUTHRICH, AUTHOR 2 I.A.WILSON,JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 2 05-FEB-08 2JWJ 1 OBSLTE REVDAT 1 13-NOV-07 2JWJ 0 JRNL AUTH A.CHATTERJEE,M.A.JOHNSON,P.SERRANO,B.PEDRINI, JRNL AUTH 2 K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE DOMAIN 513-651 FROM THE JRNL TITL 2 SARS-COV NONSTRUCTURAL PROTEIN NSP3. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0 REMARK 3 AUTHORS : GUNTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JWJ COMPLIES WITH FORMAT V. 3.1, 01-AUG-2007 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE RCSB ID CODE IS RCSB100379. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.227 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-98% 15N] REMARK 210 NSP3(513-651), 25 MM SODIUM REMARK 210 PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 2 MM SODIUM AZIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY, 3D 1H-13C REMARK 210 NOESY ALIPHATIC REGION, 3D 1H- REMARK 210 13C NOESY AROMATIC REGION REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 1.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURE CLOSEST TO THE MEAN REMARK 210 STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCELIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 578 CG1 - CB - CG2 ANGL. DEV. = 11.3 DEGREES REMARK 500 VAL A 578 CA - CB - CG1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 625 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -3 -86.44 -126.97 REMARK 500 MET A -1 84.74 -156.23 REMARK 500 SER A 516 73.29 56.59 REMARK 500 ASN A 520 45.18 -168.81 REMARK 500 LYS A 522 -41.49 -136.84 REMARK 500 TRP A 531 -179.35 -67.42 REMARK 500 ARG A 544 16.35 52.27 REMARK 500 GLN A 570 21.67 -155.92 REMARK 500 GLU A 571 -159.53 -137.85 REMARK 500 TYR A 576 88.69 -159.27 REMARK 500 ILE A 608 -102.43 35.28 REMARK 500 TYR A 610 -149.31 51.40 REMARK 500 SER A 650 88.45 62.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15469 RELATED DB: BMRB REMARK 900 NMR ASSIGNMENT OF THE 513-651 DOMAIN FROM THE SARS-COV NON- REMARK 900 STRUCTURAL PROTEIN NSP3 REMARK 900 RELATED ID: 2JWI RELATED DB: PDB REMARK 900 ENSEMBLE OF 20 ENERGY MINIMIZED CONFORMERS FOR THE 513-651 REMARK 900 DOMAIN FROM THE SARS-COV NON-STRUCTURAL PROTEIN NSP3 DBREF 2JWJ A 513 651 UNP P59641 R1AB_CVHSA 1331 1469 SEQADV 2JWJ GLY A -4 UNP P59641 EXPRESSION TAG SEQADV 2JWJ SER A -3 UNP P59641 EXPRESSION TAG SEQADV 2JWJ HIS A -2 UNP P59641 EXPRESSION TAG SEQADV 2JWJ MET A -1 UNP P59641 EXPRESSION TAG SEQRES 1 A 143 GLY SER HIS MET VAL LEU PRO SER GLU ALA PRO ASN ALA SEQRES 2 A 143 LYS GLU GLU ILE LEU GLY THR VAL SER TRP ASN LEU ARG SEQRES 3 A 143 GLU MET LEU ALA HIS ALA GLU GLU THR ARG LYS LEU MET SEQRES 4 A 143 PRO ILE CYS MET ASP VAL ARG ALA ILE MET ALA THR ILE SEQRES 5 A 143 GLN ARG LYS TYR LYS GLY ILE LYS ILE GLN GLU GLY ILE SEQRES 6 A 143 VAL ASP TYR GLY VAL ARG PHE PHE PHE TYR THR SER LYS SEQRES 7 A 143 GLU PRO VAL ALA SER ILE ILE THR LYS LEU ASN SER LEU SEQRES 8 A 143 ASN GLU PRO LEU VAL THR MET PRO ILE GLY TYR VAL THR SEQRES 9 A 143 HIS GLY PHE ASN LEU GLU GLU ALA ALA ARG CYS MET ARG SEQRES 10 A 143 SER LEU LYS ALA PRO ALA VAL VAL SER VAL SER SER PRO SEQRES 11 A 143 ASP ALA VAL THR THR TYR ASN GLY TYR LEU THR SER SER HELIX 1 1 ASN A 532 THR A 543 1 12 HELIX 2 2 VAL A 553 TYR A 564 1 12 HELIX 3 3 PRO A 588 ASN A 600 1 13 HELIX 4 4 GLY A 609 GLY A 614 5 6 HELIX 5 5 ASN A 616 LEU A 627 1 12 HELIX 6 6 SER A 637 SER A 650 1 14 SHEET 1 A 3 THR A 528 VAL A 529 0 SHEET 2 A 3 ALA A 631 SER A 634 1 O VAL A 633 N VAL A 529 SHEET 3 A 3 LEU A 603 THR A 605 1 N THR A 605 O VAL A 632 SHEET 1 B 3 LEU A 546 CYS A 550 0 SHEET 2 B 3 ARG A 579 TYR A 583 1 O ARG A 579 N MET A 547 SHEET 3 B 3 ILE A 573 ASP A 575 -1 N VAL A 574 O PHE A 580 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000