HEADER SIGNALING PROTEIN COMPLEX 09-NOV-07 2JXB TITLE STRUCTURE OF CD3EPSILON-NCK2 FIRST SH3 DOMAIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD3 EPSILON CHAIN, CYTOPLASMIC COMPND 3 PROTEIN NCK2; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: FUSION PROTEIN OF T-CELL SURFACE GLYCOPROTEIN CD3 EPSILON COMPND 6 CHAIN CYTOPLASMIC DOMAIN RESIDUES 177-188 AND CYTOPLASMIC PROTEIN COMPND 7 NCK2 FIRST SH3 DOMAIN; COMPND 8 SYNONYM: T-CELL SURFACE ANTIGEN T3/LEU-4 EPSILON CHAIN, NCK ADAPTOR COMPND 9 PROTEIN 2, SH2/SH3 ADAPTOR PROTEIN NCK-BETA, NCK-2; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: CD3E, NCK2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS NCK, CD3EPSILON, T-CELL RECEPTOR, SH3 DOMAIN, IMMUNOLOGY, CYTOPLASM, KEYWDS 2 SH2 DOMAIN, SIGNALING PROTEIN COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TAKEUCHI,H.YANG,E.NG,S.PARK,Z.J.SUN,E.L.REINHERZ,G.WAGNER REVDAT 4 29-MAY-24 2JXB 1 REMARK REVDAT 3 16-MAR-22 2JXB 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JXB 1 VERSN REVDAT 1 23-SEP-08 2JXB 0 JRNL AUTH K.TAKEUCHI,H.YANG,E.NG,S.Y.PARK,Z.Y.SUN,E.L.REINHERZ, JRNL AUTH 2 G.WAGNER JRNL TITL STRUCTURAL AND FUNCTIONAL EVIDENCE THAT NCK INTERACTION WITH JRNL TITL 2 CD3EPSILON REGULATES T-CELL RECEPTOR ACTIVITY. JRNL REF J.MOL.BIOL. V. 380 704 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18555270 JRNL DOI 10.1016/J.JMB.2008.05.037 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JXB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000100407. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM [U-13C; U-15N] ENTITY, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HNCACB; 3D HN(CO)CA; REMARK 210 3D H(CCO)NH; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, CARA REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 10 72.27 -69.71 REMARK 500 1 ASN A 11 83.99 38.49 REMARK 500 1 ASN A 15 143.21 -178.03 REMARK 500 1 SER A 16 -46.53 -160.05 REMARK 500 1 SER A 21 -73.89 -112.44 REMARK 500 1 LEU A 22 97.05 58.82 REMARK 500 1 ASN A 25 56.84 -177.50 REMARK 500 1 GLU A 30 147.26 -179.17 REMARK 500 1 ALA A 42 100.75 -55.59 REMARK 500 1 GLN A 44 -169.92 -127.52 REMARK 500 1 LEU A 59 -72.43 -96.62 REMARK 500 1 GLU A 84 107.78 -160.01 REMARK 500 2 PRO A 8 -179.85 -69.67 REMARK 500 2 PRO A 10 72.07 -69.76 REMARK 500 2 ASN A 11 83.44 38.38 REMARK 500 2 ASP A 13 54.42 -159.03 REMARK 500 2 GLU A 31 77.08 -154.15 REMARK 500 2 LEU A 59 -70.70 -99.66 REMARK 500 2 GLU A 84 111.89 -160.38 REMARK 500 3 MET A 2 79.28 56.34 REMARK 500 3 PRO A 8 -179.41 -69.73 REMARK 500 3 PRO A 10 72.84 -69.87 REMARK 500 3 ASN A 11 83.75 37.87 REMARK 500 3 SER A 16 -49.14 -156.49 REMARK 500 3 GLU A 30 146.04 -176.92 REMARK 500 3 ALA A 42 100.66 -55.76 REMARK 500 3 LEU A 59 -71.71 -98.30 REMARK 500 3 GLU A 84 112.50 -160.42 REMARK 500 4 GLU A 4 -177.27 62.42 REMARK 500 4 PRO A 10 72.40 -69.89 REMARK 500 4 ASN A 11 84.39 38.36 REMARK 500 4 LYS A 18 81.36 53.55 REMARK 500 4 SER A 21 75.24 52.62 REMARK 500 4 VAL A 23 93.37 60.66 REMARK 500 4 ASN A 25 -55.56 -162.76 REMARK 500 4 LEU A 26 164.28 62.43 REMARK 500 4 GLU A 30 146.82 -179.21 REMARK 500 4 ALA A 42 100.89 -55.69 REMARK 500 4 GLN A 44 -169.64 -104.91 REMARK 500 4 LEU A 59 -71.96 -99.88 REMARK 500 5 MET A 2 -64.94 -140.45 REMARK 500 5 PRO A 10 72.16 -69.72 REMARK 500 5 ASN A 11 83.59 38.27 REMARK 500 5 LEU A 17 -178.76 -58.37 REMARK 500 5 SER A 21 80.64 55.17 REMARK 500 5 ASN A 25 73.55 57.21 REMARK 500 5 HIS A 27 -179.48 60.50 REMARK 500 5 MET A 28 96.17 60.79 REMARK 500 5 ALA A 42 100.89 -55.92 REMARK 500 5 LEU A 59 -71.96 -100.24 REMARK 500 REMARK 500 THIS ENTRY HAS 226 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2JXB A 28 86 UNP O43639 NCK2_HUMAN 1 59 DBREF 2JXB A 3 14 UNP P07766 CD3E_HUMAN 177 188 SEQADV 2JXB HIS A 1 UNP O43639 EXPRESSION TAG SEQADV 2JXB MET A 2 UNP O43639 EXPRESSION TAG SEQADV 2JXB ASN A 15 UNP O43639 LINKER SEQADV 2JXB SER A 16 UNP O43639 LINKER SEQADV 2JXB LEU A 17 UNP O43639 LINKER SEQADV 2JXB LYS A 18 UNP O43639 LINKER SEQADV 2JXB LYS A 19 UNP O43639 LINKER SEQADV 2JXB GLY A 20 UNP O43639 LINKER SEQADV 2JXB SER A 21 UNP O43639 LINKER SEQADV 2JXB LEU A 22 UNP O43639 LINKER SEQADV 2JXB VAL A 23 UNP O43639 LINKER SEQADV 2JXB LYS A 24 UNP O43639 LINKER SEQADV 2JXB ASN A 25 UNP O43639 LINKER SEQADV 2JXB LEU A 26 UNP O43639 LINKER SEQADV 2JXB HIS A 27 UNP O43639 LINKER SEQRES 1 A 86 HIS MET LYS GLU ARG PRO PRO PRO VAL PRO ASN PRO ASP SEQRES 2 A 86 TYR ASN SER LEU LYS LYS GLY SER LEU VAL LYS ASN LEU SEQRES 3 A 86 HIS MET THR GLU GLU VAL ILE VAL ILE ALA LYS TRP ASP SEQRES 4 A 86 TYR THR ALA GLN GLN ASP GLN GLU LEU ASP ILE LYS LYS SEQRES 5 A 86 ASN GLU ARG LEU TRP LEU LEU ASP ASP SER LYS THR TRP SEQRES 6 A 86 TRP ARG VAL ARG ASN ALA ALA ASN ARG THR GLY TYR VAL SEQRES 7 A 86 PRO SER ASN TYR VAL GLU ARG LYS HELIX 1 1 ASN A 81 VAL A 83 5 3 SHEET 1 A 4 VAL A 32 ALA A 36 0 SHEET 2 A 4 GLU A 54 ASP A 60 -1 O GLU A 54 N ALA A 36 SHEET 3 A 4 TRP A 65 ARG A 69 -1 O ARG A 67 N LEU A 59 SHEET 4 A 4 THR A 75 PRO A 79 -1 O VAL A 78 N TRP A 66 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1