data_2JXD # _entry.id 2JXD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JXD pdb_00002jxd 10.2210/pdb2jxd/pdb RCSB RCSB100409 ? ? WWPDB D_1000100409 ? ? # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2JXD _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-11-15 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, T.' 1 'Lee, T.-R.' 2 'Lyu, P.-C.' 3 # _citation.id primary _citation.title 'Identification of trypsin-inhibitory site and structure determination of human SPINK2 serine proteinase inhibitor' _citation.journal_abbrev Proteins _citation.journal_volume 77 _citation.page_first 209 _citation.page_last 219 _citation.year 2009 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19422058 _citation.pdbx_database_id_DOI 10.1002/prot.22432 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, T.' 1 ? primary 'Lee, T.-R.' 2 ? primary 'Liang, W.-G.' 3 ? primary 'Chang, W.-S.W.' 4 ? primary 'Lyu, P.-C.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Serine protease inhibitor Kazal-type 2' _entity.formula_weight 7019.129 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Kazal-type domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Acrosin-trypsin inhibitor, HUSI-II' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code PQFGLFSKYRTPNCSQYRLPGCPRHFNPVCGSDMSTYANECTLCMKIREGGHNIKIIRNGPC _entity_poly.pdbx_seq_one_letter_code_can PQFGLFSKYRTPNCSQYRLPGCPRHFNPVCGSDMSTYANECTLCMKIREGGHNIKIIRNGPC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 PHE n 1 4 GLY n 1 5 LEU n 1 6 PHE n 1 7 SER n 1 8 LYS n 1 9 TYR n 1 10 ARG n 1 11 THR n 1 12 PRO n 1 13 ASN n 1 14 CYS n 1 15 SER n 1 16 GLN n 1 17 TYR n 1 18 ARG n 1 19 LEU n 1 20 PRO n 1 21 GLY n 1 22 CYS n 1 23 PRO n 1 24 ARG n 1 25 HIS n 1 26 PHE n 1 27 ASN n 1 28 PRO n 1 29 VAL n 1 30 CYS n 1 31 GLY n 1 32 SER n 1 33 ASP n 1 34 MET n 1 35 SER n 1 36 THR n 1 37 TYR n 1 38 ALA n 1 39 ASN n 1 40 GLU n 1 41 CYS n 1 42 THR n 1 43 LEU n 1 44 CYS n 1 45 MET n 1 46 LYS n 1 47 ILE n 1 48 ARG n 1 49 GLU n 1 50 GLY n 1 51 GLY n 1 52 HIS n 1 53 ASN n 1 54 ILE n 1 55 LYS n 1 56 ILE n 1 57 ILE n 1 58 ARG n 1 59 ASN n 1 60 GLY n 1 61 PRO n 1 62 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SPINK2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector pET32a _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ISK2_HUMAN _struct_ref.pdbx_db_accession P20155 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code PQFGLFSKYRTPNCSQYRLPGCPRHFNPVCGSDMSTYANECTLCMKIREGGHNIKIIRNGPC _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JXD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 62 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P20155 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 84 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 62 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.solution_id 1 _pdbx_nmr_exptl.type '2D NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 3.7 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '1.5 mM SPINK2, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker AVANCE' # _pdbx_nmr_refine.entry_id 2JXD _pdbx_nmr_refine.method 'simulated annealing, Water refinement' _pdbx_nmr_refine.details ;Structure calculations were carried out with the standard simulated annealing protocol by using the CNS 1.1 program. Several rounds of calculations were used to eliminate the ambiguity in the assignment.Final structures were refined by the explicit water model using the OPLS force field in RECOORD and evaluated with PROCHECK-nmr. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JXD _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JXD _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_software.authors 'Brunger A.T.' _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name CNS _pdbx_nmr_software.version 1.1 _pdbx_nmr_software.ordinal 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2JXD _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JXD _struct.title 'NMR structure of human Serine protease inhibitor Kazal type II (SPINK2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JXD _struct_keywords.pdbx_keywords 'HYDROLASE INHIBITOR' _struct_keywords.text ;anti-parallel beta sheet, beta-bulge, disulfide bond, alpha helix, Protease inhibitor, Pyrrolidone carboxylic acid, Secreted, Serine protease inhibitor, HYDROLASE INHIBITOR ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 42 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 49 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 42 _struct_conf.end_auth_comp_id GLU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 49 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 44 SG ? ? A CYS 14 A CYS 44 1_555 ? ? ? ? ? ? ? 2.016 ? ? disulf2 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 41 SG ? ? A CYS 22 A CYS 41 1_555 ? ? ? ? ? ? ? 2.014 ? ? disulf3 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 62 SG ? ? A CYS 30 A CYS 62 1_555 ? ? ? ? ? ? ? 2.015 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 36 ? TYR A 37 ? THR A 36 TYR A 37 A 2 VAL A 29 ? GLY A 31 ? VAL A 29 GLY A 31 A 3 ILE A 56 ? ARG A 58 ? ILE A 56 ARG A 58 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 37 ? O TYR A 37 N VAL A 29 ? N VAL A 29 A 2 3 N CYS A 30 ? N CYS A 30 O ARG A 58 ? O ARG A 58 # _atom_sites.entry_id 2JXD _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 HIS 25 25 25 HIS HIS A . n A 1 26 PHE 26 26 26 PHE PHE A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 MET 34 34 34 MET MET A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 CYS 41 41 41 CYS CYS A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 MET 45 45 45 MET MET A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 HIS 52 52 52 HIS HIS A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 CYS 62 62 62 CYS CYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_spectrometer 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_nmr_exptl_sample.component SPINK2 _pdbx_nmr_exptl_sample.concentration 1.5 _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A LEU 43 ? ? H A ILE 47 ? ? 1.59 2 2 O A LEU 43 ? ? H A ILE 47 ? ? 1.60 3 3 O A LEU 43 ? ? H A ILE 47 ? ? 1.55 4 3 O A MET 34 ? ? HG A SER 35 ? ? 1.58 5 4 O A MET 34 ? ? HG A SER 35 ? ? 1.57 6 4 O A LEU 43 ? ? H A ILE 47 ? ? 1.59 7 5 O A LEU 43 ? ? H A ILE 47 ? ? 1.60 8 6 O A MET 34 ? ? HG A SER 35 ? ? 1.58 9 7 O A LEU 43 ? ? H A ILE 47 ? ? 1.60 10 8 O A LEU 43 ? ? H A ILE 47 ? ? 1.58 11 10 O A LEU 43 ? ? H A ILE 47 ? ? 1.57 12 12 O A LEU 43 ? ? H A ILE 47 ? ? 1.59 13 14 O A LEU 43 ? ? H A ILE 47 ? ? 1.59 14 15 OD1 A ASP 33 ? ? HD1 A HIS 52 ? ? 1.59 15 15 O A LEU 43 ? ? H A ILE 47 ? ? 1.59 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A LEU 43 ? ? O A LEU 43 ? ? 1.085 1.229 -0.144 0.019 N 2 2 C A LEU 43 ? ? O A LEU 43 ? ? 1.106 1.229 -0.123 0.019 N 3 3 C A LEU 43 ? ? O A LEU 43 ? ? 1.090 1.229 -0.139 0.019 N 4 4 C A LEU 43 ? ? O A LEU 43 ? ? 1.111 1.229 -0.118 0.019 N 5 5 C A LEU 43 ? ? O A LEU 43 ? ? 1.090 1.229 -0.139 0.019 N 6 6 C A LEU 43 ? ? O A LEU 43 ? ? 1.111 1.229 -0.118 0.019 N 7 7 C A LEU 43 ? ? O A LEU 43 ? ? 1.105 1.229 -0.124 0.019 N 8 8 C A LEU 43 ? ? O A LEU 43 ? ? 1.086 1.229 -0.143 0.019 N 9 9 C A LEU 43 ? ? O A LEU 43 ? ? 1.108 1.229 -0.121 0.019 N 10 10 C A LEU 43 ? ? O A LEU 43 ? ? 1.106 1.229 -0.123 0.019 N 11 11 C A LEU 43 ? ? O A LEU 43 ? ? 1.098 1.229 -0.131 0.019 N 12 12 C A LEU 43 ? ? O A LEU 43 ? ? 1.080 1.229 -0.149 0.019 N 13 13 C A LEU 43 ? ? O A LEU 43 ? ? 1.087 1.229 -0.142 0.019 N 14 14 C A LEU 43 ? ? O A LEU 43 ? ? 1.093 1.229 -0.136 0.019 N 15 15 C A LEU 43 ? ? O A LEU 43 ? ? 1.094 1.229 -0.135 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 2 CB A TYR 37 ? ? CG A TYR 37 ? ? CD2 A TYR 37 ? ? 116.88 121.00 -4.12 0.60 N 2 5 CB A TYR 37 ? ? CG A TYR 37 ? ? CD2 A TYR 37 ? ? 117.30 121.00 -3.70 0.60 N 3 12 CB A TYR 37 ? ? CG A TYR 37 ? ? CD2 A TYR 37 ? ? 117.27 121.00 -3.73 0.60 N 4 14 CB A TYR 37 ? ? CG A TYR 37 ? ? CD2 A TYR 37 ? ? 117.24 121.00 -3.76 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 3 ? ? 70.58 -47.56 2 1 LYS A 8 ? ? 77.26 -67.01 3 1 TYR A 9 ? ? 173.63 -161.33 4 1 TYR A 17 ? ? 70.38 33.41 5 1 ARG A 24 ? ? 63.89 175.54 6 1 MET A 34 ? ? 62.55 65.48 7 1 SER A 35 ? ? -160.65 111.30 8 1 ALA A 38 ? ? 152.47 92.94 9 1 ASN A 39 ? ? 174.04 -178.11 10 1 THR A 42 ? ? -93.09 -64.09 11 1 GLU A 49 ? ? -179.38 20.97 12 2 TYR A 9 ? ? 70.96 -155.74 13 2 ARG A 18 ? ? 81.59 148.92 14 2 ARG A 24 ? ? -69.08 -76.14 15 2 ASN A 27 ? ? -157.02 80.40 16 2 MET A 34 ? ? -176.53 -61.00 17 2 ALA A 38 ? ? 178.56 -36.57 18 2 GLU A 40 ? ? -79.22 21.01 19 2 THR A 42 ? ? -122.53 -68.26 20 3 PHE A 3 ? ? 71.80 -41.30 21 3 TYR A 9 ? ? 63.14 -161.62 22 3 TYR A 17 ? ? -171.93 122.54 23 3 LEU A 19 ? ? 82.73 101.55 24 3 HIS A 25 ? ? 82.98 71.67 25 3 MET A 34 ? ? 65.02 74.26 26 3 SER A 35 ? ? 179.76 102.19 27 3 ALA A 38 ? ? 152.73 87.63 28 3 THR A 42 ? ? -105.82 -60.89 29 3 GLU A 49 ? ? -179.31 34.87 30 4 GLN A 2 ? ? -96.97 -61.44 31 4 PHE A 6 ? ? 72.91 -61.55 32 4 LYS A 8 ? ? 56.20 127.46 33 4 TYR A 9 ? ? -132.18 -149.18 34 4 CYS A 14 ? ? -79.59 31.14 35 4 ARG A 24 ? ? 70.97 143.50 36 4 MET A 34 ? ? 62.74 87.64 37 4 SER A 35 ? ? 172.75 110.32 38 4 ALA A 38 ? ? 149.08 98.44 39 4 ASN A 39 ? ? 168.43 173.83 40 4 THR A 42 ? ? -97.36 -63.52 41 4 GLU A 49 ? ? 169.70 22.69 42 5 PHE A 3 ? ? -142.03 -36.94 43 5 PHE A 6 ? ? 74.70 152.46 44 5 SER A 7 ? ? 61.18 -84.38 45 5 TYR A 9 ? ? 64.38 -157.22 46 5 HIS A 25 ? ? -171.36 92.05 47 5 PHE A 26 ? ? -172.19 147.64 48 5 ASP A 33 ? ? -82.71 36.32 49 5 ALA A 38 ? ? 155.49 105.85 50 5 ASN A 39 ? ? 166.73 -174.24 51 5 GLU A 49 ? ? 169.19 25.96 52 6 GLN A 2 ? ? 59.18 -70.28 53 6 TYR A 9 ? ? -131.39 -156.26 54 6 SER A 15 ? ? -145.25 23.96 55 6 TYR A 17 ? ? 77.08 91.42 56 6 ARG A 24 ? ? -125.35 -159.15 57 6 ASP A 33 ? ? -98.27 32.50 58 6 MET A 34 ? ? 60.35 77.56 59 6 SER A 35 ? ? 177.29 103.81 60 6 ALA A 38 ? ? 176.53 -156.21 61 6 ASN A 39 ? ? 81.60 153.10 62 6 THR A 42 ? ? -108.41 -60.86 63 6 GLU A 49 ? ? 170.11 22.54 64 7 PHE A 6 ? ? 67.58 101.08 65 7 TYR A 9 ? ? 56.87 -144.53 66 7 CYS A 14 ? ? -78.70 20.58 67 7 TYR A 17 ? ? 178.26 86.27 68 7 ARG A 24 ? ? 54.48 -98.15 69 7 HIS A 25 ? ? 171.33 82.78 70 7 MET A 34 ? ? 56.70 76.54 71 7 ALA A 38 ? ? 168.66 -161.57 72 7 ASN A 39 ? ? 70.57 169.22 73 7 THR A 42 ? ? -100.30 -61.37 74 7 GLU A 49 ? ? 173.21 21.36 75 8 GLN A 2 ? ? -116.89 -75.51 76 8 PHE A 6 ? ? -117.26 -74.27 77 8 TYR A 9 ? ? -79.13 -153.12 78 8 SER A 15 ? ? -158.15 27.26 79 8 LEU A 19 ? ? 85.37 140.14 80 8 ARG A 24 ? ? 62.90 173.17 81 8 ASN A 27 ? ? -119.19 79.86 82 8 ASP A 33 ? ? -79.84 23.96 83 8 MET A 34 ? ? 71.56 79.94 84 8 ALA A 38 ? ? 149.18 94.46 85 8 ASN A 39 ? ? 178.24 176.21 86 8 GLU A 49 ? ? 174.38 19.94 87 8 PRO A 61 ? ? -76.03 29.89 88 9 GLN A 2 ? ? 65.86 106.78 89 9 PHE A 3 ? ? 65.78 -172.66 90 9 TYR A 9 ? ? 72.76 -166.16 91 9 SER A 15 ? ? -71.81 35.97 92 9 GLN A 16 ? ? -162.54 33.11 93 9 ARG A 18 ? ? -93.69 55.22 94 9 ARG A 24 ? ? 42.96 -91.30 95 9 HIS A 25 ? ? 171.56 125.01 96 9 ALA A 38 ? ? 177.08 -159.02 97 9 ASN A 39 ? ? 66.01 171.63 98 9 GLU A 49 ? ? 173.54 20.32 99 10 SER A 15 ? ? 53.19 -79.46 100 10 TYR A 17 ? ? -160.99 75.08 101 10 PRO A 23 ? ? -49.61 159.54 102 10 ARG A 24 ? ? -79.68 -107.77 103 10 PHE A 26 ? ? -146.21 19.94 104 10 ASN A 27 ? ? -22.66 82.61 105 10 MET A 34 ? ? 87.09 19.72 106 10 ALA A 38 ? ? 173.67 -150.28 107 10 ASN A 39 ? ? 82.62 144.94 108 10 GLU A 49 ? ? 172.76 17.51 109 11 CYS A 14 ? ? -79.36 20.06 110 11 ARG A 24 ? ? 60.29 -170.48 111 11 ASP A 33 ? ? -85.01 33.94 112 11 ALA A 38 ? ? 178.30 -159.21 113 11 ASN A 39 ? ? 67.95 172.20 114 11 THR A 42 ? ? -96.42 -61.46 115 11 GLU A 49 ? ? 171.47 19.72 116 11 HIS A 52 ? ? -156.70 70.66 117 11 ASN A 53 ? ? 24.48 68.48 118 12 GLN A 16 ? ? 177.72 -171.88 119 12 TYR A 17 ? ? 70.33 93.19 120 12 HIS A 25 ? ? -168.78 76.82 121 12 ASN A 27 ? ? -158.55 79.50 122 12 ASP A 33 ? ? -90.07 40.41 123 12 ALA A 38 ? ? 174.20 -22.73 124 12 THR A 42 ? ? -96.04 -62.74 125 12 GLU A 49 ? ? 116.92 23.05 126 13 PHE A 3 ? ? -130.66 -50.80 127 13 LEU A 5 ? ? -94.75 -62.34 128 13 PHE A 6 ? ? -143.12 -46.46 129 13 TYR A 9 ? ? 63.59 -155.21 130 13 PRO A 23 ? ? -46.41 156.81 131 13 ARG A 24 ? ? -66.27 -95.90 132 13 HIS A 25 ? ? -171.73 32.25 133 13 PHE A 26 ? ? -78.90 26.23 134 13 ASN A 27 ? ? -22.59 83.62 135 13 MET A 34 ? ? 61.99 68.38 136 13 SER A 35 ? ? -173.44 109.98 137 13 ALA A 38 ? ? 153.93 82.37 138 13 THR A 42 ? ? -90.94 -62.32 139 13 GLU A 49 ? ? -178.55 17.07 140 14 PHE A 6 ? ? 60.50 91.89 141 14 SER A 7 ? ? -163.15 -53.96 142 14 TYR A 9 ? ? -99.20 -158.37 143 14 TYR A 17 ? ? 164.16 137.94 144 14 ARG A 24 ? ? -97.45 -146.99 145 14 MET A 34 ? ? 68.14 82.92 146 14 SER A 35 ? ? 172.24 108.24 147 14 ALA A 38 ? ? 152.86 114.02 148 14 ASN A 39 ? ? 162.04 -176.88 149 14 GLU A 49 ? ? 172.18 21.38 150 15 PHE A 3 ? ? 68.69 70.29 151 15 LEU A 5 ? ? 170.28 -22.54 152 15 ASN A 13 ? ? -110.32 73.99 153 15 HIS A 25 ? ? 175.28 -28.06 154 15 MET A 34 ? ? 61.75 76.21 155 15 SER A 35 ? ? 171.13 117.28 156 15 ALA A 38 ? ? 150.99 100.51 157 15 ASN A 39 ? ? 168.63 -179.55 158 15 GLU A 49 ? ? 171.68 21.71 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 10 ? ? 0.088 'SIDE CHAIN' 2 2 ARG A 10 ? ? 0.158 'SIDE CHAIN' 3 3 ARG A 10 ? ? 0.072 'SIDE CHAIN' 4 5 ARG A 10 ? ? 0.083 'SIDE CHAIN' 5 10 ARG A 10 ? ? 0.088 'SIDE CHAIN' 6 15 ARG A 10 ? ? 0.080 'SIDE CHAIN' #