HEADER DNA BINDING PROTEIN, DNA 19-NOV-07 2JXI TITLE SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF PSEUDOMONAS PUTIDA TITLE 2 PROLINE UTILIZATION A (PUTA) BOUND TO GTTGCA DNA SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: DNA (5'- COMPND 6 D(*DGP*DCP*DGP*DGP*DTP*DTP*DGP*DCP*DAP*DCP*DCP*DTP*DTP*DT)-3'); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'- COMPND 11 D(*DAP*DAP*DAP*DGP*DGP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DC)-3'); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 ORGANISM_TAXID: 32630; SOURCE 7 MOL_ID: 3; SOURCE 8 SYNTHETIC: YES KEYWDS PUTA, PROLINE, UTILIZATION, DNA, DNA BINDING PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR S.HALOUSKA,Y.ZHOU,D.BECKER,R.POWERS REVDAT 4 01-MAY-24 2JXI 1 REMARK REVDAT 3 27-MAY-15 2JXI 1 SOURCE VERSN REVDAT 2 10-FEB-09 2JXI 1 VERSN JRNL REVDAT 1 21-OCT-08 2JXI 0 JRNL AUTH S.HALOUSKA,Y.ZHOU,D.F.BECKER,R.POWERS JRNL TITL SOLUTION STRUCTURE OF THE PSEUDOMONAS PUTIDA PROTEIN JRNL TITL 2 PPPUTA45 AND ITS DNA COMPLEX JRNL REF PROTEINS V. 75 12 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18767154 JRNL DOI 10.1002/PROT.22217 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : HADDOCK, HADDOCK REMARK 3 AUTHORS : ALEXANDRE BONVIN (HADDOCK), ALEXANDRE BONVIN REMARK 3 (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JXI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000100414. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 200MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 82 UM [U-100% 13C; U-100% 15N] REMARK 210 PUTA45, 82 UM DNA, 200 MM SODIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 68.98 -106.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7082 RELATED DB: BMRB REMARK 900 RELATED ID: 2JXG RELATED DB: PDB REMARK 900 RELATED ID: 2JXH RELATED DB: PDB DBREF 2JXI A 1 45 UNP Q9R9T7 Q9R9T7_PSEPU 1 45 DBREF 2JXI B 46 90 UNP Q9R9T7 Q9R9T7_PSEPU 1 45 DBREF 2JXI C 1 14 PDB 2JXI 2JXI 1 14 DBREF 2JXI D 15 28 PDB 2JXI 2JXI 15 28 SEQRES 1 A 45 MET ALA THR THR THR LEU GLY VAL LYS LEU ASP ASP PRO SEQRES 2 A 45 THR ARG GLU ARG LEU LYS ALA ALA ALA GLN SER ILE ASP SEQRES 3 A 45 ARG THR PRO HIS TRP LEU ILE LYS GLN ALA ILE PHE ASN SEQRES 4 A 45 TYR LEU GLU LYS LEU GLU SEQRES 1 B 45 MET ALA THR THR THR LEU GLY VAL LYS LEU ASP ASP PRO SEQRES 2 B 45 THR ARG GLU ARG LEU LYS ALA ALA ALA GLN SER ILE ASP SEQRES 3 B 45 ARG THR PRO HIS TRP LEU ILE LYS GLN ALA ILE PHE ASN SEQRES 4 B 45 TYR LEU GLU LYS LEU GLU SEQRES 1 C 14 DG DC DG DG DT DT DG DC DA DC DC DT DT SEQRES 2 C 14 DT SEQRES 1 D 14 DA DA DA DG DG DT DG DC DA DA DC DC DG SEQRES 2 D 14 DC HELIX 1 1 ASP A 12 ILE A 25 1 14 HELIX 2 2 THR A 28 GLU A 45 1 18 HELIX 3 3 ASP B 56 ILE B 70 1 15 HELIX 4 4 THR B 73 GLU B 90 1 18 SHEET 1 A 2 THR A 5 LEU A 6 0 SHEET 2 A 2 VAL B 53 LYS B 54 -1 O VAL B 53 N LEU A 6 SHEET 1 B 2 LEU A 10 ASP A 11 0 SHEET 2 B 2 THR B 48 THR B 49 -1 O THR B 49 N LEU A 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000