HEADER LIPOPROTEIN 27-NOV-07 2JXP TITLE SOLUTION NMR STRUCTURE OF UNCHARACTERIZED LIPOPROTEIN B FROM TITLE 2 NITROSOMONAS EUROPAEA. NORTHEAST STRUCTURAL GENOMICS TARGET NER45A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LIPOPROTEIN B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 20-165; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA ATCC 19718; SOURCE 3 ORGANISM_TAXID: 228410; SOURCE 4 STRAIN: IFO 14298; SOURCE 5 GENE: RLPB, NE1138; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: NER45A-21.4 KEYWDS UNCHARACTERIZED LIPOPROTEIN B, NORTHEAST STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, NESG, PSI-2, PROTEIN STRUCTURE INITIATIVE, LIPOPROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.ROSSI,D.WANG,H.JANJUA,L.OWENS,R.XIAO,M.C.BARAN,G.SWAPNA,T.B.ACTON, AUTHOR 2 B.ROST,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG) REVDAT 3 16-MAR-22 2JXP 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JXP 1 VERSN REVDAT 1 11-DEC-07 2JXP 0 JRNL AUTH P.ROSSI,R.XIAO,T.B.ACTON,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF UNCHARACTERIZED LIPOPROTEIN B FROM JRNL TITL 2 NITROSOMONAS EUROPAEA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CNS 1.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JXP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000100421. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM LIPOPROTEIN B, 20 MM MES, 5 REMARK 210 MM CALCIUM CHLORIDE, 100 MM DTT, REMARK 210 100 MM SODIUM CHLORIDE, 0.02 % REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O; REMARK 210 0.86 MM LIPOPROTEIN B, 20 MM MES, REMARK 210 5 MM CALCIUM CHLORIDE, 100 MM REMARK 210 DTT, 100 MM SODIUM CHLORIDE, REMARK 210 0.02 % SODIUM AZIDE, 100% D2O; REMARK 210 1.3 MM LIPOPROTEIN B, 20 MM MES, REMARK 210 5 MM CALCIUM CHLORIDE, 100 MM REMARK 210 DTT, 100 MM SODIUM CHLORIDE, REMARK 210 0.02 % SODIUM AZIDE, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HBHA(CO)NH; 3D REMARK 210 SIMULTANEOUS 15N-13C NOESY; 3D REMARK 210 1H-13C NOESY; 3D HCCH-COSY; 3D REMARK 210 HCCH-TOCSY; 3D CCH-TOCSY; 3D REMARK 210 HNCO; 3D HNCACO REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN 2.4, NMRPIPE, PSVS REMARK 210 1.3, SPARKY 3.112, TOPSPIN 1.3, REMARK 210 MOLMOL 2.2, RPF 2.1.1, PROCHECK, REMARK 210 MOLPROBITY, XEASY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: MONOMER BY GEL FILTRATION CHROMATOGRAPHY/LIGHT SCATTERING. REMARK 210 STRUCTURE DETERMINED BY TRIPLE RESONANCE NMR SPECTROSCOPY. NOESY REMARK 210 ASSIGNMENTS BY CYANA2.1. 20 OF 100 STRUCTURES LOWEST TARGET REMARK 210 FUNCTION SELECTED WITH CYANA2.1. SELECTED MODELS ARE FURTHER REMARK 210 REFINED USING CNS IN EXPLICIT WATER SHELL (NILGES PROTOCOL WITH REMARK 210 PARAM19). ASSIGNMENT STATS (EXCLUDING C-TERM TAG): BACKBONE 98.9% REMARK 210 , SIDECHAIN 86.6%, AROMATIC (SC) 78.4%, VL METHYL STEREOSPECIFIC REMARK 210 100%, UNAMBIGUOUS SIDECHAIN NH2 100%. STRUCTURE BASED ON 2279 REMARK 210 NOE. MAX NOE VIOLATION 0.46 A (1 MODEL). 22 TOTAL CLOSE CONTACTS REMARK 210 PER 20 MODELS. STRUCTURE QUALITY FACTOR (PSVS 1.3): ORDERED REMARK 210 RESIDUES RANGES - ALPHA HELICES: (26-38, 114-117, 120-143), BETA REMARK 210 STRANDS: (42-44, 16-20, 52-65, 76-89, 100-108, 94-96, 68-69, 73- REMARK 210 74) FOR [S(PHI)+S(PSI)] > 1.8. RMSD 0.7 BB, 1.3 ALL HEAVY ATOMS. REMARK 210 RAMA. DISTRIBUTION: 90.4/9.5/0.1/0.0. PROCHECK (PSI-PHI): -0.34/- REMARK 210 1.02 (RAW/Z), PROCHECK (ALL): -0.35/-2.07 (RAW/Z), MOLPROBITY REMARK 210 CLASH: 20.44/-1.98 (RAW/Z). RPF SCORES ALL ASSIGNED RESIDUES REMARK 210 (FIT OF NOESY PEAKLISTS TO STRUCTURE): RECALL: 0.868, PRECISION: REMARK 210 0.871, F-MEASURE: 0.869, DP-SCORE: 0.706. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 5 -168.97 -108.73 REMARK 500 1 SER A 10 31.88 -153.69 REMARK 500 1 ARG A 75 -90.22 -90.70 REMARK 500 1 ALA A 119 -62.19 -106.37 REMARK 500 1 ALA A 146 -63.70 -155.06 REMARK 500 1 HIS A 151 -81.15 66.59 REMARK 500 2 ILE A 27 -40.07 -172.16 REMARK 500 2 THR A 39 -166.47 -113.56 REMARK 500 2 SER A 71 96.23 59.56 REMARK 500 2 ARG A 75 -73.00 -104.11 REMARK 500 2 HIS A 152 118.04 -170.25 REMARK 500 3 GLU A 15 -53.50 -141.74 REMARK 500 3 PRO A 22 6.67 -67.49 REMARK 500 3 ALA A 23 20.98 -151.00 REMARK 500 3 VAL A 57 -70.67 -88.22 REMARK 500 3 GLU A 70 -74.31 60.07 REMARK 500 3 SER A 71 45.23 -77.31 REMARK 500 3 ARG A 75 -89.22 -116.11 REMARK 500 3 ASP A 89 -168.32 -108.13 REMARK 500 3 GLU A 94 81.57 -67.56 REMARK 500 3 SER A 97 89.76 58.16 REMARK 500 3 PHE A 109 98.77 -66.14 REMARK 500 3 ASP A 111 -75.57 -69.68 REMARK 500 3 SER A 145 42.99 -86.68 REMARK 500 4 PRO A 13 33.59 -77.93 REMARK 500 4 HIS A 58 136.34 -170.57 REMARK 500 4 ARG A 75 -75.76 -127.07 REMARK 500 4 ASN A 92 16.98 59.22 REMARK 500 4 GLU A 94 116.90 66.01 REMARK 500 4 LEU A 95 -69.75 -95.76 REMARK 500 5 PRO A 13 33.47 -73.79 REMARK 500 5 THR A 39 -165.37 -129.08 REMARK 500 5 SER A 50 -156.29 -95.88 REMARK 500 5 GLU A 51 -58.27 -151.01 REMARK 500 5 ARG A 75 -93.62 -133.91 REMARK 500 5 GLU A 94 95.36 -68.41 REMARK 500 5 LEU A 95 -73.22 -94.91 REMARK 500 5 ALA A 112 -52.84 74.32 REMARK 500 5 GLN A 113 90.51 -52.71 REMARK 500 5 ALA A 142 -1.18 -154.03 REMARK 500 5 ALA A 146 5.39 -69.09 REMARK 500 5 GLU A 149 -94.48 -91.00 REMARK 500 5 HIS A 151 92.33 -60.30 REMARK 500 6 SER A 10 146.95 -177.57 REMARK 500 6 PRO A 13 36.50 -74.54 REMARK 500 6 ALA A 41 104.84 -52.19 REMARK 500 6 GLU A 70 18.92 59.43 REMARK 500 6 ARG A 75 -67.72 -101.53 REMARK 500 6 GLU A 94 106.61 -56.97 REMARK 500 6 PHE A 109 98.37 -66.69 REMARK 500 REMARK 500 THIS ENTRY HAS 169 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NER45A RELATED DB: TARGETDB REMARK 900 RELATED ID: 15568 RELATED DB: BMRB DBREF 2JXP A 2 147 UNP Q82VF2 Q82VF2_NITEU 20 165 SEQADV 2JXP MET A 1 UNP Q82VF2 EXPRESSION TAG SEQADV 2JXP PHE A 143 UNP Q82VF2 VAL 161 CONFLICT SEQADV 2JXP LEU A 148 UNP Q82VF2 EXPRESSION TAG SEQADV 2JXP GLU A 149 UNP Q82VF2 EXPRESSION TAG SEQADV 2JXP HIS A 150 UNP Q82VF2 EXPRESSION TAG SEQADV 2JXP HIS A 151 UNP Q82VF2 EXPRESSION TAG SEQADV 2JXP HIS A 152 UNP Q82VF2 EXPRESSION TAG SEQADV 2JXP HIS A 153 UNP Q82VF2 EXPRESSION TAG SEQADV 2JXP HIS A 154 UNP Q82VF2 EXPRESSION TAG SEQADV 2JXP HIS A 155 UNP Q82VF2 EXPRESSION TAG SEQRES 1 A 155 MET GLY PHE LYS LEU ARG GLY GLN VAL SER GLU LEU PRO SEQRES 2 A 155 PHE GLU ARG VAL TYR ILE THR ALA PRO ALA GLY LEU THR SEQRES 3 A 155 ILE GLY SER ASP LEU GLU ARG VAL ILE SER THR HIS THR SEQRES 4 A 155 ARG ALA LYS VAL VAL ASN LYS ALA GLU LYS SER GLU ALA SEQRES 5 A 155 ILE ILE GLN ILE VAL HIS ALA ILE ARG GLU LYS ARG ILE SEQRES 6 A 155 LEU SER LEU SER GLU SER GLY ARG VAL ARG GLU PHE GLU SEQRES 7 A 155 LEU VAL TYR ARG VAL ALA ALA ARG LEU LEU ASP ALA HIS SEQRES 8 A 155 ASN ALA GLU LEU ALA SER LEU GLN GLU ILE ARG LEU THR SEQRES 9 A 155 ARG ILE LEU PRO PHE LEU ASP ALA GLN GLU LEU ALA LYS SEQRES 10 A 155 ALA ALA GLU GLU GLU MET LEU TYR LYS ASP MET GLN LYS SEQRES 11 A 155 ASP ALA VAL GLN GLN ILE LEU ARG GLN VAL SER ALA PHE SEQRES 12 A 155 THR SER ALA GLY LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 LEU A 25 THR A 39 1 15 HELIX 2 2 LYS A 46 SER A 50 5 5 HELIX 3 3 GLN A 113 ALA A 118 1 6 HELIX 4 4 ALA A 119 THR A 144 1 26 HELIX 5 5 GLY A 147 HIS A 151 5 5 SHEET 1 A 5 LYS A 42 VAL A 44 0 SHEET 2 A 5 ARG A 16 THR A 20 1 N VAL A 17 O VAL A 44 SHEET 3 A 5 ALA A 52 ILE A 65 1 O ILE A 54 N TYR A 18 SHEET 4 A 5 GLU A 76 ASP A 89 -1 O ARG A 86 N GLN A 55 SHEET 5 A 5 GLU A 94 ALA A 96 -1 O ALA A 96 N LEU A 87 SHEET 1 B 5 LYS A 42 VAL A 44 0 SHEET 2 B 5 ARG A 16 THR A 20 1 N VAL A 17 O VAL A 44 SHEET 3 B 5 ALA A 52 ILE A 65 1 O ILE A 54 N TYR A 18 SHEET 4 B 5 GLU A 76 ASP A 89 -1 O ARG A 86 N GLN A 55 SHEET 5 B 5 GLU A 100 PRO A 108 -1 O LEU A 103 N TYR A 81 SHEET 1 C 2 LEU A 68 SER A 69 0 SHEET 2 C 2 ARG A 73 VAL A 74 -1 O ARG A 73 N SER A 69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1