HEADER HYDROLASE 07-DEC-07 2JY9 TITLE NMR STRUCTURE OF PUTATIVE TRNA HYDROLASE DOMAIN FROM SALMONELLA TITLE 2 TYPHIMURIUM. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET STR220 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRNA HYDROLASE DOMAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM LT2; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: LT2 / SGSC1412; SOURCE 5 ATCC: 700720; SOURCE 6 GENE: YAEJ, STM0240; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS GFT NMR, PROTEIN STRUCTURE, HYDROLASE, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.K.SINGARAPU,Y.WU,D.SUKUMARAN,A.ELETSKY,A.ZERI,D.WANG,H.JANJUA, AUTHOR 2 L.OWENS,R.XIAO,J.LIU,M.C.BARAN,G.V.T.SWAPNA,T.B.ACTON,B.ROST, AUTHOR 3 G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG) REVDAT 4 14-JUN-23 2JY9 1 REMARK REVDAT 3 19-FEB-20 2JY9 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JY9 1 VERSN REVDAT 1 01-JAN-08 2JY9 0 JRNL AUTH K.K.SINGARAPU,Y.WU,D.SUKUMARAN,A.ELETSKY,A.ZERI,D.WANG, JRNL AUTH 2 H.JANJUA,L.OWENS,R.XIAO,J.LIU,M.C.BARAN,G.V.T.SWAPNA, JRNL AUTH 3 T.B.ACTON,B.ROST,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL NMR STRUCTURE OF PUTATIVE TRNA HYDROLASE DOMAIN FROM JRNL TITL 2 SALMONELLA TYPHIMURIUM. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOASSIGN, CNS, CYANA REMARK 3 AUTHORS : ZIMMERMAN, MOSELEY, KULIKOWSKI AND MONTELIONE REMARK 3 (AUTOASSIGN), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JY9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000100440. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.4 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 4,3D GFT CABCACONHN; 4,3D GFT REMARK 210 HNNCABCA; 4,3D GFT HCCH COSY; 3D REMARK 210 HCCH-COSY; 3D SIMNOESY; 4,3D REMARK 210 HABCABCONHN REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE, MOLMOL, NMRPIPE, REMARK 210 PSVS, TALOS, VNMRJ, XEASY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA GLU A 50 HE2 LYS A 53 1.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 6 71.20 67.07 REMARK 500 1 THR A 7 -44.52 75.72 REMARK 500 1 ALA A 11 -175.07 -66.25 REMARK 500 1 GLN A 23 137.22 72.00 REMARK 500 1 SER A 34 33.06 -85.38 REMARK 500 1 SER A 46 -162.89 -128.92 REMARK 500 1 ASP A 66 -48.62 177.46 REMARK 500 1 GLU A 76 -60.40 -124.12 REMARK 500 1 ARG A 78 -164.01 -71.19 REMARK 500 1 SER A 79 89.29 71.53 REMARK 500 1 GLU A 101 -167.30 -66.68 REMARK 500 1 LYS A 103 -14.53 75.90 REMARK 500 1 ARG A 106 -166.85 64.03 REMARK 500 1 SER A 114 116.92 -172.08 REMARK 500 1 LYS A 115 113.02 -171.17 REMARK 500 1 LEU A 119 101.13 -165.04 REMARK 500 2 ARG A 6 -88.54 66.97 REMARK 500 2 GLN A 23 70.18 71.37 REMARK 500 2 SER A 46 -162.12 -122.38 REMARK 500 2 SER A 65 -83.57 -97.16 REMARK 500 2 ASP A 66 -52.84 -141.08 REMARK 500 2 GLN A 75 104.80 -166.45 REMARK 500 2 GLU A 76 -68.66 -126.39 REMARK 500 2 ARG A 78 -43.25 69.04 REMARK 500 2 GLN A 102 99.61 68.04 REMARK 500 2 ARG A 106 109.14 -164.92 REMARK 500 2 ALA A 107 31.39 -141.60 REMARK 500 2 LEU A 119 -167.91 58.16 REMARK 500 2 SER A 120 101.91 -178.12 REMARK 500 3 ARG A 6 -83.63 69.09 REMARK 500 3 THR A 7 20.11 -164.32 REMARK 500 3 ALA A 22 -83.87 -69.51 REMARK 500 3 GLN A 23 -0.78 -147.69 REMARK 500 3 SER A 46 119.46 67.23 REMARK 500 3 SER A 60 99.09 -68.83 REMARK 500 3 HIS A 62 -56.61 72.18 REMARK 500 3 ASP A 66 -53.39 177.87 REMARK 500 3 GLU A 76 -76.95 -145.38 REMARK 500 3 GLN A 102 -74.16 -124.93 REMARK 500 3 LYS A 103 94.61 57.48 REMARK 500 3 ARG A 106 108.96 -172.81 REMARK 500 3 ARG A 112 94.85 -166.85 REMARK 500 3 LYS A 129 118.78 -165.54 REMARK 500 4 ARG A 6 -164.35 65.03 REMARK 500 4 THR A 7 37.94 -88.77 REMARK 500 4 ARG A 21 -61.29 -95.08 REMARK 500 4 ALA A 22 87.72 56.39 REMARK 500 4 ALA A 25 162.14 71.12 REMARK 500 4 SER A 65 -85.35 -81.43 REMARK 500 4 ASP A 66 -38.57 -163.93 REMARK 500 REMARK 500 THIS ENTRY HAS 349 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: STR220 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15584 RELATED DB: BMRB DBREF 2JY9 A 1 140 UNP Q8ZRN3 Q8ZRN3_SALTY 1 140 SEQADV 2JY9 LEU A 141 UNP Q8ZRN3 EXPRESSION TAG SEQADV 2JY9 GLU A 142 UNP Q8ZRN3 EXPRESSION TAG SEQADV 2JY9 HIS A 143 UNP Q8ZRN3 EXPRESSION TAG SEQADV 2JY9 HIS A 144 UNP Q8ZRN3 EXPRESSION TAG SEQADV 2JY9 HIS A 145 UNP Q8ZRN3 EXPRESSION TAG SEQADV 2JY9 HIS A 146 UNP Q8ZRN3 EXPRESSION TAG SEQADV 2JY9 HIS A 147 UNP Q8ZRN3 EXPRESSION TAG SEQADV 2JY9 HIS A 148 UNP Q8ZRN3 EXPRESSION TAG SEQRES 1 A 148 MET ILE ALA ILE SER ARG THR VAL SER ILE ALA ASP ASN SEQRES 2 A 148 GLU LEU GLU ILE THR ALA ILE ARG ALA GLN GLY ALA GLY SEQRES 3 A 148 GLY GLN HIS VAL ASN LYS THR SER SER ALA ILE HIS LEU SEQRES 4 A 148 ARG PHE ASP ILE ARG ALA SER GLY LEU PRO GLU TYR TYR SEQRES 5 A 148 LYS GLN ARG LEU LEU THR ALA SER HIS HIS LEU ILE SER SEQRES 6 A 148 ASP ASP GLY VAL ILE ILE ILE LYS ALA GLN GLU PHE ARG SEQRES 7 A 148 SER GLN GLU LEU ASN ARG GLU ALA ALA ILE ALA ARG LEU SEQRES 8 A 148 VAL ALA VAL ILE LYS GLU LEU THR ALA GLU GLN LYS SER SEQRES 9 A 148 ARG ARG ALA THR ARG PRO THR ARG ALA SER LYS GLU ARG SEQRES 10 A 148 ARG LEU SER SER LYS ALA GLN LYS SER SER VAL LYS ALA SEQRES 11 A 148 LEU ARG GLY LYS VAL ARG ARG PRO LEU ASP LEU GLU HIS SEQRES 12 A 148 HIS HIS HIS HIS HIS HELIX 1 1 PRO A 49 ALA A 59 1 11 HELIX 2 2 SER A 79 ALA A 100 1 22 SHEET 1 A 3 GLU A 16 ILE A 20 0 SHEET 2 A 3 ALA A 36 PHE A 41 -1 O HIS A 38 N THR A 18 SHEET 3 A 3 ILE A 70 ALA A 74 -1 O ILE A 70 N PHE A 41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1