data_2JYE # _entry.id 2JYE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JYE pdb_00002jye 10.2210/pdb2jye/pdb RCSB RCSB100445 ? ? WWPDB D_1000100445 ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.content_type 1QGM PDB 'Carp granulin-1 fragment' unspecified 1G26 PDB 'Human granulin A fragment' unspecified 1FWO PDB 'Oryzain beta fragment' unspecified # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2JYE _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-13 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tolkatchev, D.' 1 'Wang, P.' 2 'Chen, Z.' 3 'Xu, P.' 4 'Ni, F.' 5 # _citation.id primary _citation.title 'Structure dissection of human progranulin identifies well-folded granulin/epithelin modules with unique functional activities.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 17 _citation.page_first 711 _citation.page_last 724 _citation.year 2008 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18359860 _citation.pdbx_database_id_DOI 10.1110/ps.073295308 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tolkatchev, D.' 1 ? primary 'Malik, S.' 2 ? primary 'Vinogradova, A.' 3 ? primary 'Wang, P.' 4 ? primary 'Chen, Z.' 5 ? primary 'Xu, P.' 6 ? primary 'Bennett, H.P.' 7 ? primary 'Bateman, A.' 8 ? primary 'Ni, F.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Granulin A' _entity.formula_weight 7920.015 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AMDVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQKLAAALEHHHHHH _entity_poly.pdbx_seq_one_letter_code_can AMDVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQKLAAALEHHHHHH _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MET n 1 3 ASP n 1 4 VAL n 1 5 LYS n 1 6 CYS n 1 7 ASP n 1 8 MET n 1 9 GLU n 1 10 VAL n 1 11 SER n 1 12 CYS n 1 13 PRO n 1 14 ASP n 1 15 GLY n 1 16 TYR n 1 17 THR n 1 18 CYS n 1 19 CYS n 1 20 ARG n 1 21 LEU n 1 22 GLN n 1 23 SER n 1 24 GLY n 1 25 ALA n 1 26 TRP n 1 27 GLY n 1 28 CYS n 1 29 CYS n 1 30 PRO n 1 31 PHE n 1 32 THR n 1 33 GLN n 1 34 ALA n 1 35 VAL n 1 36 CYS n 1 37 CYS n 1 38 GLU n 1 39 ASP n 1 40 HIS n 1 41 ILE n 1 42 HIS n 1 43 CYS n 1 44 CYS n 1 45 PRO n 1 46 ALA n 1 47 GLY n 1 48 PHE n 1 49 THR n 1 50 CYS n 1 51 ASP n 1 52 THR n 1 53 GLN n 1 54 LYS n 1 55 GLY n 1 56 THR n 1 57 CYS n 1 58 GLU n 1 59 GLN n 1 60 LYS n 1 61 LEU n 1 62 ALA n 1 63 ALA n 1 64 ALA n 1 65 LEU n 1 66 GLU n 1 67 HIS n 1 68 HIS n 1 69 HIS n 1 70 HIS n 1 71 HIS n 1 72 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene GRN _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Origami(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pET-32 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GRN_HUMAN _struct_ref.pdbx_db_accession P28799 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQ _struct_ref.pdbx_align_begin 281 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JYE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 59 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P28799 _struct_ref_seq.db_align_beg 281 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 337 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 59 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2JYE ALA A 1 ? UNP P28799 ? ? 'expression tag' 1 1 1 2JYE MET A 2 ? UNP P28799 ? ? 'expression tag' 2 2 1 2JYE LYS A 60 ? UNP P28799 ? ? 'expression tag' 60 3 1 2JYE LEU A 61 ? UNP P28799 ? ? 'expression tag' 61 4 1 2JYE ALA A 62 ? UNP P28799 ? ? 'expression tag' 62 5 1 2JYE ALA A 63 ? UNP P28799 ? ? 'expression tag' 63 6 1 2JYE ALA A 64 ? UNP P28799 ? ? 'expression tag' 64 7 1 2JYE LEU A 65 ? UNP P28799 ? ? 'expression tag' 65 8 1 2JYE GLU A 66 ? UNP P28799 ? ? 'expression tag' 66 9 1 2JYE HIS A 67 ? UNP P28799 ? ? 'expression tag' 67 10 1 2JYE HIS A 68 ? UNP P28799 ? ? 'expression tag' 68 11 1 2JYE HIS A 69 ? UNP P28799 ? ? 'expression tag' 69 12 1 2JYE HIS A 70 ? UNP P28799 ? ? 'expression tag' 70 13 1 2JYE HIS A 71 ? UNP P28799 ? ? 'expression tag' 71 14 1 2JYE HIS A 72 ? UNP P28799 ? ? 'expression tag' 72 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-1H TOCSY' 1 3 1 'MJ-[1H,15N]-HSQC' 1 4 1 '2D 1H-1H NOESY' 1 5 1 '3D 1H-15N TOCSY' 1 6 1 '3D 1H-15N NOESY' 2 7 1 '2D 1H-15N HSQC' 1 8 2 '2D 1H-1H TOCSY' 1 9 2 '2D 1H-1H NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 ? 6.8 ambient ? 298 K 2 ? 6.8 ambient ? 288 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '10 mM sodium phosphate, 150 mM sodium chloride, 0.2 mM EDTA, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '10 mM sodium phosphate, 150 mM sodium chloride, 0.2 mM EDTA, 100% D2O' 2 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker AVANCE 1 'Bruker Avance' 500 Bruker AVANCE 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2JYE _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 60 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JYE _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JYE _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal ;Linge, O'Donoghue and Nilges ; 'structure solution' ARIA 1.0 1 'Johnson, One Moon Scientific' 'chemical shift assignment' NMRView ? 2 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 3 Tripos 'data analysis' SYBYL ? 4 'Accelrys Software Inc.' 'data analysis' 'Insight II' ? 5 'Koradi, Billeter and Wuthrich' 'data analysis' MOLMOL ? 6 ;Linge, O'Donoghue and Nilges ; refinement ARIA 1.0 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2JYE _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JYE _struct.title 'Human Granulin A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JYE _struct_keywords.pdbx_keywords CYTOKINE _struct_keywords.text 'Granulin A, epithelin, human, stack of hairpins, Alternative splicing, Cytokine, Glycoprotein, Polymorphism, Secreted' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 18 SG ? ? A CYS 6 A CYS 18 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 12 SG ? ? ? 1_555 A CYS 28 SG ? ? A CYS 12 A CYS 28 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? A CYS 19 SG ? ? ? 1_555 A CYS 36 SG ? ? A CYS 19 A CYS 36 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf4 disulf ? ? A CYS 29 SG ? ? ? 1_555 A CYS 43 SG ? ? A CYS 29 A CYS 43 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf5 disulf ? ? A CYS 37 SG ? ? ? 1_555 A CYS 50 SG ? ? A CYS 37 A CYS 50 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf6 disulf ? ? A CYS 44 SG ? ? ? 1_555 A CYS 57 SG ? ? A CYS 44 A CYS 57 1_555 ? ? ? ? ? ? ? 2.026 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 16 ? ARG A 20 ? TYR A 16 ARG A 20 A 2 TRP A 26 ? PRO A 30 ? TRP A 26 PRO A 30 B 1 CYS A 50 ? ASP A 51 ? CYS A 50 ASP A 51 B 2 THR A 56 ? CYS A 57 ? THR A 56 CYS A 57 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 19 ? N CYS A 19 O GLY A 27 ? O GLY A 27 B 1 2 O ASP A 51 ? O ASP A 51 N THR A 56 ? N THR A 56 # _atom_sites.entry_id 2JYE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 MET 2 2 2 MET MET A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 CYS 18 18 18 CYS CYS A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 CYS 36 36 36 CYS CYS A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 HIS 42 42 42 HIS HIS A . n A 1 43 CYS 43 43 43 CYS CYS A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 CYS 50 50 50 CYS CYS A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 CYS 57 57 57 CYS CYS A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 HIS 67 67 67 HIS HIS A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 HIS 72 72 72 HIS HIS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'sodium phosphate' 10 mM ? 1 'sodium chloride' 150 mM ? 1 EDTA 0.2 mM ? 1 'sodium phosphate' 10 mM ? 2 'sodium chloride' 150 mM ? 2 EDTA 0.2 mM ? 2 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 8 ? ? -92.75 46.28 2 1 GLU A 9 ? ? -164.93 -1.51 3 1 SER A 11 ? ? -151.35 88.88 4 1 PRO A 13 ? ? -75.48 -156.59 5 1 SER A 23 ? ? -73.24 25.71 6 1 GLN A 33 ? ? -178.01 -157.28 7 1 ALA A 34 ? ? -58.17 95.21 8 1 GLU A 38 ? ? 57.17 -167.97 9 1 ASP A 39 ? ? -92.29 -140.63 10 1 HIS A 40 ? ? 62.86 -95.31 11 1 PRO A 45 ? ? -69.13 34.68 12 1 ALA A 46 ? ? 66.29 161.40 13 1 GLN A 53 ? ? 57.46 14.05 14 1 GLU A 58 ? ? -156.60 82.32 15 1 GLN A 59 ? ? 63.24 164.46 16 1 LEU A 61 ? ? -141.93 -82.15 17 1 ALA A 62 ? ? -166.71 -10.67 18 1 ALA A 63 ? ? 64.30 109.30 19 1 ALA A 64 ? ? 55.88 72.71 20 2 MET A 2 ? ? -101.85 40.57 21 2 ASP A 7 ? ? -173.70 13.69 22 2 GLU A 9 ? ? -147.53 -41.44 23 2 PRO A 13 ? ? -69.84 -161.95 24 2 ALA A 25 ? ? -174.39 -171.87 25 2 PRO A 30 ? ? -74.66 39.20 26 2 PHE A 31 ? ? 61.19 145.60 27 2 THR A 32 ? ? -175.56 40.93 28 2 ALA A 34 ? ? 58.77 92.93 29 2 CYS A 37 ? ? -161.23 -79.36 30 2 ASP A 39 ? ? -165.43 -56.19 31 2 HIS A 40 ? ? -147.41 -48.86 32 2 HIS A 42 ? ? 63.25 165.41 33 2 PRO A 45 ? ? -73.62 36.32 34 2 ALA A 46 ? ? 67.02 127.22 35 2 GLN A 53 ? ? 58.45 13.56 36 2 GLN A 59 ? ? -51.53 103.80 37 2 LYS A 60 ? ? 54.76 179.77 38 2 ALA A 62 ? ? -124.27 -62.09 39 2 ALA A 63 ? ? -139.20 -158.73 40 2 ALA A 64 ? ? 59.57 -95.92 41 2 LEU A 65 ? ? 62.57 170.60 42 2 HIS A 67 ? ? -164.37 32.33 43 3 MET A 2 ? ? 55.55 84.22 44 3 MET A 8 ? ? -87.18 38.18 45 3 GLU A 9 ? ? -161.06 -35.48 46 3 PRO A 13 ? ? -80.61 -156.19 47 3 LEU A 21 ? ? -105.31 -87.92 48 3 ALA A 34 ? ? -157.97 -62.52 49 3 CYS A 36 ? ? -147.99 -74.84 50 3 CYS A 37 ? ? 46.38 -151.97 51 3 HIS A 40 ? ? -137.48 -35.18 52 3 ILE A 41 ? ? -165.23 -30.62 53 3 CYS A 44 ? ? 66.63 144.55 54 3 PRO A 45 ? ? -62.14 -141.29 55 3 ALA A 46 ? ? -52.08 -83.74 56 3 LYS A 54 ? ? -173.31 36.09 57 3 LYS A 60 ? ? 62.09 -175.89 58 3 ALA A 64 ? ? 61.05 105.01 59 3 HIS A 67 ? ? 61.87 103.68 60 3 HIS A 70 ? ? -107.39 -148.11 61 4 ASP A 7 ? ? 61.80 167.83 62 4 MET A 8 ? ? -92.80 56.33 63 4 GLU A 9 ? ? -171.67 -8.16 64 4 PRO A 13 ? ? -78.96 -154.32 65 4 LEU A 21 ? ? -108.36 -78.04 66 4 GLN A 33 ? ? 56.41 -160.89 67 4 CYS A 36 ? ? -174.84 39.50 68 4 ASP A 39 ? ? 55.58 -161.99 69 4 HIS A 40 ? ? 57.21 -168.13 70 4 ILE A 41 ? ? -143.01 -20.64 71 4 CYS A 44 ? ? 63.28 157.33 72 4 PRO A 45 ? ? -57.19 -178.34 73 4 THR A 52 ? ? -74.06 47.38 74 4 LYS A 54 ? ? -174.07 32.17 75 4 LYS A 60 ? ? 64.85 -73.16 76 4 LEU A 61 ? ? -57.02 -174.68 77 4 ALA A 64 ? ? -165.24 77.42 78 4 LEU A 65 ? ? 66.78 147.51 79 4 GLU A 66 ? ? -127.45 -169.42 80 4 HIS A 68 ? ? -114.28 -144.85 81 4 HIS A 69 ? ? 63.02 -171.72 82 5 MET A 2 ? ? 55.49 -113.49 83 5 ASP A 3 ? ? 64.56 141.05 84 5 PRO A 13 ? ? -66.92 -165.33 85 5 GLN A 22 ? ? -172.09 -46.99 86 5 SER A 23 ? ? 170.25 -32.01 87 5 ALA A 25 ? ? -166.59 -165.99 88 5 THR A 32 ? ? -65.65 -158.79 89 5 GLN A 33 ? ? -109.00 -165.51 90 5 ALA A 34 ? ? 69.61 86.05 91 5 HIS A 40 ? ? -159.68 49.37 92 5 ILE A 41 ? ? -163.09 -13.64 93 5 CYS A 44 ? ? 64.01 142.53 94 5 GLN A 53 ? ? 59.17 6.46 95 5 LYS A 60 ? ? 48.66 84.50 96 5 ALA A 62 ? ? -160.32 2.50 97 5 ALA A 63 ? ? 61.12 -87.51 98 5 ALA A 64 ? ? -157.42 70.71 99 5 LEU A 65 ? ? 54.83 81.53 100 5 GLU A 66 ? ? -157.48 -59.33 101 6 MET A 2 ? ? 58.80 95.57 102 6 MET A 8 ? ? -84.86 46.31 103 6 GLU A 9 ? ? -166.85 -12.62 104 6 SER A 11 ? ? -158.52 84.85 105 6 PRO A 13 ? ? -73.24 -164.93 106 6 ALA A 25 ? ? -176.57 -166.92 107 6 GLN A 33 ? ? 60.55 -169.24 108 6 VAL A 35 ? ? -144.05 -66.32 109 6 CYS A 36 ? ? 62.87 95.36 110 6 CYS A 37 ? ? -116.20 -146.10 111 6 ASP A 39 ? ? 62.65 166.78 112 6 PRO A 45 ? ? -75.48 31.78 113 6 ALA A 46 ? ? 66.47 125.34 114 6 LYS A 54 ? ? -153.21 17.97 115 6 GLN A 59 ? ? -62.43 84.77 116 6 LYS A 60 ? ? 57.41 -164.08 117 6 LEU A 61 ? ? 60.85 66.90 118 6 ALA A 63 ? ? 63.72 -96.14 119 6 LEU A 65 ? ? -35.64 112.14 120 6 HIS A 67 ? ? 47.90 81.56 121 6 HIS A 68 ? ? 56.92 -171.43 122 7 MET A 2 ? ? 56.68 -148.04 123 7 ASP A 3 ? ? 63.17 176.14 124 7 MET A 8 ? ? -104.49 40.95 125 7 GLU A 9 ? ? -159.01 -29.55 126 7 PRO A 13 ? ? -76.05 -158.87 127 7 LEU A 21 ? ? -104.43 -97.40 128 7 GLN A 22 ? ? -92.26 35.11 129 7 SER A 23 ? ? 54.81 17.05 130 7 ALA A 25 ? ? -176.39 -172.59 131 7 GLN A 33 ? ? -177.18 -66.80 132 7 ALA A 34 ? ? -176.96 108.22 133 7 CYS A 37 ? ? 60.80 123.18 134 7 GLU A 38 ? ? -63.38 -110.95 135 7 ASP A 39 ? ? 52.95 -91.58 136 7 HIS A 40 ? ? -168.74 36.49 137 7 CYS A 44 ? ? 67.77 160.73 138 7 PRO A 45 ? ? -44.20 160.77 139 7 LYS A 54 ? ? -171.79 31.78 140 7 GLN A 59 ? ? -59.96 79.45 141 7 LYS A 60 ? ? 175.53 -91.82 142 7 HIS A 67 ? ? -101.41 -79.85 143 7 HIS A 69 ? ? -71.53 -83.28 144 7 HIS A 70 ? ? -154.34 -57.42 145 7 HIS A 71 ? ? 66.01 138.06 146 8 MET A 2 ? ? -109.26 -164.99 147 8 LYS A 5 ? ? -123.10 -160.38 148 8 CYS A 6 ? ? -154.53 -65.90 149 8 GLU A 9 ? ? -136.07 -47.87 150 8 PRO A 13 ? ? -78.62 -154.13 151 8 GLN A 22 ? ? 70.43 -17.57 152 8 SER A 23 ? ? -73.54 26.67 153 8 PHE A 31 ? ? -115.18 -161.73 154 8 GLN A 33 ? ? 64.82 125.87 155 8 ALA A 34 ? ? -171.17 -151.18 156 8 GLU A 38 ? ? 57.32 -169.12 157 8 HIS A 40 ? ? -159.87 -48.21 158 8 ILE A 41 ? ? -169.11 -27.78 159 8 ALA A 46 ? ? 55.39 -170.70 160 8 GLN A 53 ? ? 59.89 7.44 161 8 LYS A 54 ? ? -104.45 -68.16 162 8 GLN A 59 ? ? -56.78 98.90 163 8 LYS A 60 ? ? 55.05 -160.19 164 8 LEU A 61 ? ? 67.02 147.44 165 8 ALA A 62 ? ? -153.80 -56.95 166 8 ALA A 63 ? ? 61.25 -86.05 167 8 GLU A 66 ? ? -111.64 -166.87 168 8 HIS A 67 ? ? -87.24 -79.27 169 8 HIS A 68 ? ? -132.59 -55.77 170 8 HIS A 70 ? ? -77.71 -101.24 171 8 HIS A 71 ? ? -131.13 -51.20 172 9 ASP A 7 ? ? 62.22 -159.63 173 9 GLU A 9 ? ? -162.15 22.61 174 9 PRO A 13 ? ? -78.18 -163.45 175 9 LEU A 21 ? ? -105.99 -98.46 176 9 GLN A 22 ? ? -93.96 32.42 177 9 ALA A 34 ? ? -141.99 -78.19 178 9 CYS A 36 ? ? -170.14 -24.18 179 9 HIS A 40 ? ? -135.10 -62.55 180 9 CYS A 44 ? ? 58.64 101.22 181 9 ALA A 46 ? ? 64.60 147.53 182 9 ASP A 51 ? ? 179.87 -172.35 183 9 THR A 52 ? ? 101.99 -35.45 184 9 GLN A 53 ? ? -178.44 -2.57 185 9 LYS A 54 ? ? -169.53 -44.84 186 9 LEU A 61 ? ? 61.60 171.26 187 9 ALA A 63 ? ? 65.05 140.55 188 9 ALA A 64 ? ? -62.85 94.71 189 9 LEU A 65 ? ? 47.75 73.29 190 9 GLU A 66 ? ? -115.03 70.31 191 9 HIS A 67 ? ? 51.70 -146.38 192 9 HIS A 68 ? ? -149.91 -41.94 193 9 HIS A 70 ? ? 58.42 -172.76 194 9 HIS A 71 ? ? 56.89 -163.67 195 10 MET A 8 ? ? -86.67 41.00 196 10 GLU A 9 ? ? -160.70 -22.09 197 10 PRO A 13 ? ? -78.74 -165.06 198 10 LEU A 21 ? ? -123.35 -96.43 199 10 PRO A 30 ? ? -72.53 34.54 200 10 PHE A 31 ? ? 60.12 155.45 201 10 THR A 32 ? ? -176.24 28.18 202 10 VAL A 35 ? ? 65.08 154.89 203 10 CYS A 36 ? ? -160.65 6.36 204 10 ILE A 41 ? ? -154.86 18.99 205 10 HIS A 42 ? ? 67.05 156.00 206 10 CYS A 44 ? ? 53.28 83.12 207 10 ALA A 46 ? ? 61.93 147.74 208 10 GLN A 53 ? ? 56.63 11.90 209 10 GLN A 59 ? ? -75.25 37.12 210 10 LYS A 60 ? ? 169.30 -169.78 211 10 ALA A 63 ? ? 64.77 158.43 212 10 GLU A 66 ? ? -69.24 -174.29 213 10 HIS A 67 ? ? -73.92 -167.29 214 10 HIS A 70 ? ? -110.80 76.79 #