HEADER VIRAL PROTEIN 13-DEC-07 2JYG TITLE SOLUTION STRUCTURE OF THE W184A/M185A MUTANT OF THE CARBOXY-TERMINAL TITLE 2 DIMERIZATION DOMAIN OF THE HIV-1 CAPSID PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN P24 (CA); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 280-363; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: GAG-POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET15B; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PLASMID KEYWDS HIV-1, CARBOXY-TERMINAL, DIMERIZATION DOMAIN, CTD, 3D-NMR, CAPSID KEYWDS 2 PROTEIN (CA), DOUBLE MUTANT, MONOMER STRUCTURE, AIDS, ASPARTYL KEYWDS 3 PROTEASE, CAPSID MATURATION, CORE PROTEIN, CYTOPLASM, DNA KEYWDS 4 INTEGRATION, DNA RECOMBINATION, DNA-DIRECTED DNA POLYMERASE, KEYWDS 5 ENDONUCLEASE, HYDROLASE, LIPOPROTEIN, MAGNESIUM, MEMBRANE, METAL- KEYWDS 6 BINDING, MULTIFUNCTIONAL ENZYME, MYRISTATE, NUCLEASE, KEYWDS 7 NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, PROTEASE, RNA- KEYWDS 8 BINDING, RNA-DIRECTED DNA POLYMERASE, TRANSFERASE, VIRAL KEYWDS 9 NUCLEOPROTEIN, VIRION, ZINC, ZINC-FINGER, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR H.C.WONG,R.SHIN,N.R.KRISHNA REVDAT 6 29-MAY-24 2JYG 1 REMARK REVDAT 5 20-OCT-21 2JYG 1 REMARK SEQADV REVDAT 4 24-FEB-09 2JYG 1 VERSN REVDAT 3 18-MAR-08 2JYG 1 JRNL REVDAT 2 11-MAR-08 2JYG 1 JRNL REVDAT 1 26-FEB-08 2JYG 0 JRNL AUTH H.C.WONG,R.SHIN,N.R.KRISHNA JRNL TITL SOLUTION STRUCTURE OF A DOUBLE MUTANT OF THE JRNL TITL 2 CARBOXY-TERMINAL DIMERIZATION DOMAIN OF THE HIV-1 CAPSID JRNL TITL 3 PROTEIN. JRNL REF BIOCHEMISTRY V. 47 2289 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18220423 JRNL DOI 10.1021/BI7022128 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CYANA REMARK 4 REMARK 4 2JYG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100447. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN, 1 MM [U-98% 15N] REMARK 210 PROTEIN, 1 MM [U-95% 13C] REMARK 210 PROTEIN, 90% V/V H2O, 10% MM [U- REMARK 210 100% 2H] D2O, 50 MM SODIUM REMARK 210 PHOSPHATE, 90%H2O/10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D HCCH-TOCSY; 3D HNHA; 15N-HSQC- REMARK 210 NOESY; 13C-HSQC-NOESY; HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURAL CONSTRAINTS INCLUDED NOE, HYDROGEN BONDS, AND REMARK 210 TORSION ANGLE CONSTRAINTS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 189 H ASN A 193 1.52 REMARK 500 HH TYR A 164 O LEU A 190 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 175 35.45 -160.63 REMARK 500 1 GLN A 176 97.34 -38.00 REMARK 500 1 ALA A 177 157.14 179.99 REMARK 500 1 GLU A 180 66.82 -164.91 REMARK 500 1 ASN A 195 174.03 -47.44 REMARK 500 1 LEU A 205 -85.99 -53.94 REMARK 500 1 HIS A 226 -72.86 -164.22 REMARK 500 1 ALA A 228 112.21 179.54 REMARK 500 1 ARG A 229 169.03 179.61 REMARK 500 2 GLU A 175 44.40 -151.27 REMARK 500 2 GLN A 176 156.42 -37.56 REMARK 500 2 ALA A 177 158.46 -40.08 REMARK 500 2 ASN A 195 174.11 -50.75 REMARK 500 2 LEU A 205 -85.53 -63.97 REMARK 500 2 HIS A 226 124.75 -173.68 REMARK 500 2 ALA A 228 133.17 179.62 REMARK 500 2 ARG A 229 161.95 179.62 REMARK 500 3 SER A 149 72.22 -101.53 REMARK 500 3 PRO A 157 -74.74 -75.03 REMARK 500 3 GLU A 175 53.68 174.33 REMARK 500 3 GLN A 176 98.20 -37.85 REMARK 500 3 ASN A 195 175.83 -48.22 REMARK 500 3 LEU A 205 -87.76 -46.76 REMARK 500 3 ALA A 228 159.63 -40.60 REMARK 500 3 ARG A 229 169.88 -45.08 REMARK 500 4 GLU A 175 42.39 -177.21 REMARK 500 4 GLN A 176 101.82 -37.12 REMARK 500 4 ALA A 177 145.94 179.99 REMARK 500 4 GLU A 180 72.05 -177.87 REMARK 500 4 ASN A 195 174.60 -52.70 REMARK 500 4 LEU A 205 -84.50 -65.60 REMARK 500 4 ALA A 228 77.36 179.61 REMARK 500 4 ARG A 229 109.33 -39.17 REMARK 500 5 GLU A 175 48.70 -177.49 REMARK 500 5 GLN A 176 114.25 -37.50 REMARK 500 5 ALA A 177 142.19 -176.48 REMARK 500 5 ALA A 184 110.65 73.37 REMARK 500 5 ASN A 195 175.56 -48.41 REMARK 500 5 LEU A 205 -82.20 -58.24 REMARK 500 5 LYS A 227 -62.28 -141.24 REMARK 500 5 ARG A 229 148.40 -39.70 REMARK 500 6 GLU A 175 54.29 170.40 REMARK 500 6 GLN A 176 128.93 -38.61 REMARK 500 6 ALA A 177 139.74 179.92 REMARK 500 6 ALA A 184 106.03 71.81 REMARK 500 6 ASN A 195 176.93 -54.13 REMARK 500 6 LEU A 205 -83.41 -66.68 REMARK 500 6 ALA A 228 136.98 179.74 REMARK 500 6 ARG A 229 153.25 179.65 REMARK 500 7 PRO A 157 -71.46 -74.99 REMARK 500 REMARK 500 THIS ENTRY HAS 244 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2JYG A 148 231 UNP P12497 POL_HV1N5 280 363 SEQADV 2JYG ALA A 184 UNP P12497 TRP 316 ENGINEERED MUTATION SEQADV 2JYG ALA A 185 UNP P12497 MET 317 ENGINEERED MUTATION SEQRES 1 A 84 THR SER ILE LEU ASP ILE ARG GLN GLY PRO LYS GLU PRO SEQRES 2 A 84 PHE ARG ASP TYR VAL ASP ARG PHE TYR LYS THR LEU ARG SEQRES 3 A 84 ALA GLU GLN ALA SER GLN GLU VAL LYS ASN ALA ALA THR SEQRES 4 A 84 GLU THR LEU LEU VAL GLN ASN ALA ASN PRO ASP CYS LYS SEQRES 5 A 84 THR ILE LEU LYS ALA LEU GLY PRO GLY ALA THR LEU GLU SEQRES 6 A 84 GLU MET MET THR ALA CYS GLN GLY VAL GLY GLY PRO GLY SEQRES 7 A 84 HIS LYS ALA ARG VAL LEU HELIX 1 1 PRO A 160 ARG A 173 1 14 HELIX 2 2 ALA A 185 ASN A 193 1 9 HELIX 3 3 ASN A 195 GLY A 206 1 12 HELIX 4 4 THR A 210 VAL A 221 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1