HEADER VIRAL PROTEIN 14-DEC-07 2JYL TITLE SOLUTION STRUCTURE OF A DOUBLE MUTANT OF THE CARBOXY-TERMINAL TITLE 2 DIMERIZATION DOMAIN OF THE HIV-1 CAPSID PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN P24 (CA); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: GAG-POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS HIV-1, CARBOXY-TERMINAL, DIMERIZATION DOMAIN, CTD, 3D-NMR, CAPSID KEYWDS 2 PROTEIN (CA), DOUBLE MUTANT, MONOMER STRUCTURE, AIDS, ASPARTYL KEYWDS 3 PROTEASE, CAPSID MATURATION, CORE PROTEIN, CYTOPLASM, DNA KEYWDS 4 INTEGRATION, DNA RECOMBINATION, DNA-DIRECTED DNA POLYMERASE, KEYWDS 5 ENDONUCLEASE, HYDROLASE, LIPOPROTEIN, MAGNESIUM, MEMBRANE, METAL- KEYWDS 6 BINDING, MULTIFUNCTIONAL ENZYME, MYRISTATE, NUCLEASE, KEYWDS 7 NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, PROTEASE, RNA- KEYWDS 8 BINDING, RNA-DIRECTED DNA POLYMERASE, TRANSFERASE, VIRAL KEYWDS 9 NUCLEOPROTEIN, VIRION, ZINC, ZINC-FINGER, VIRAL PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR H.C.WONG,R.SHIN,N.R.KRISHNA REVDAT 4 20-OCT-21 2JYL 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JYL 1 VERSN REVDAT 2 04-MAR-08 2JYL 1 JRNL REVDAT 1 12-FEB-08 2JYL 0 JRNL AUTH H.C.WONG,R.SHIN,N.R.KRISHNA JRNL TITL SOLUTION STRUCTURE OF A DOUBLE MUTANT OF THE JRNL TITL 2 CARBOXY-TERMINAL DIMERIZATION DOMAIN OF THE HIV-1 CAPSID JRNL TITL 3 PROTEIN. JRNL REF BIOCHEMISTRY V. 47 2289 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18220423 JRNL DOI 10.1021/BI7022128 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, P. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JYL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000100452. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN, 50 MM SODIUM PHOSPHATE, REMARK 210 90%H2O/10%D2O; 1 MM [U-98% 15N] REMARK 210 PROTEIN, 50 MM SODIUM PHOSPHATE, REMARK 210 90%H2O/10%D2O; 1 MM [U-95% 13C] REMARK 210 PROTEIN, 50 MM SODIUM PHOSPHATE, REMARK 210 90%H2O/10%D2O; 1 MM [U-98% 13C; REMARK 210 U-98% 15N] PROTEIN, 50 MM SODIUM REMARK 210 PHOSPHATE, 100%D2O; 1 MM [U-98% REMARK 210 15N] PROTEIN, 50 MM SODIUM REMARK 210 PHOSPHATE, 100%D2O; 1 MM [U-95% REMARK 210 13C] PROTEIN, 50 MM SODIUM REMARK 210 PHOSPHATE, 100%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D HCCH-TOCSY; 3D HNHA; 15N-HSQC- REMARK 210 NOESY; 13C-HSQC-NOESY; HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURAL CONSTRAINTS INCLUDED NOE, HYDROGEN BONDS, AND REMARK 210 TORSION ANGLE CONSTRAINTS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 MET A 127 REMARK 465 GLY A 128 REMARK 465 SER A 129 REMARK 465 SER A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 SER A 137 REMARK 465 SER A 138 REMARK 465 GLY A 139 REMARK 465 LEU A 140 REMARK 465 VAL A 141 REMARK 465 PRO A 142 REMARK 465 ARG A 143 REMARK 465 GLY A 144 REMARK 465 SER A 145 REMARK 465 HIS A 146 REMARK 465 MET A 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 164 O LEU A 190 1.45 REMARK 500 O LEU A 189 H ASN A 193 1.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 175 46.48 -172.76 REMARK 500 GLN A 176 99.45 -40.56 REMARK 500 ALA A 177 159.41 179.55 REMARK 500 GLU A 180 65.07 -161.76 REMARK 500 ASN A 195 175.89 -52.13 REMARK 500 LEU A 205 -84.94 -44.85 REMARK 500 VAL A 221 142.06 -39.31 REMARK 500 ALA A 228 108.26 -39.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JYG RELATED DB: PDB REMARK 900 ENSEMBLE OF NMR STRUCTURES DBREF 2JYL A 148 231 UNP P12497 POL_HV1N5 280 363 SEQADV 2JYL MET A 127 UNP P12497 EXPRESSION TAG SEQADV 2JYL GLY A 128 UNP P12497 EXPRESSION TAG SEQADV 2JYL SER A 129 UNP P12497 EXPRESSION TAG SEQADV 2JYL SER A 130 UNP P12497 EXPRESSION TAG SEQADV 2JYL HIS A 131 UNP P12497 EXPRESSION TAG SEQADV 2JYL HIS A 132 UNP P12497 EXPRESSION TAG SEQADV 2JYL HIS A 133 UNP P12497 EXPRESSION TAG SEQADV 2JYL HIS A 134 UNP P12497 EXPRESSION TAG SEQADV 2JYL HIS A 135 UNP P12497 EXPRESSION TAG SEQADV 2JYL HIS A 136 UNP P12497 EXPRESSION TAG SEQADV 2JYL SER A 137 UNP P12497 EXPRESSION TAG SEQADV 2JYL SER A 138 UNP P12497 EXPRESSION TAG SEQADV 2JYL GLY A 139 UNP P12497 EXPRESSION TAG SEQADV 2JYL LEU A 140 UNP P12497 EXPRESSION TAG SEQADV 2JYL VAL A 141 UNP P12497 EXPRESSION TAG SEQADV 2JYL PRO A 142 UNP P12497 EXPRESSION TAG SEQADV 2JYL ARG A 143 UNP P12497 EXPRESSION TAG SEQADV 2JYL GLY A 144 UNP P12497 EXPRESSION TAG SEQADV 2JYL SER A 145 UNP P12497 EXPRESSION TAG SEQADV 2JYL HIS A 146 UNP P12497 EXPRESSION TAG SEQADV 2JYL MET A 147 UNP P12497 EXPRESSION TAG SEQADV 2JYL ALA A 184 UNP P12497 TRP 316 ENGINEERED MUTATION SEQADV 2JYL ALA A 185 UNP P12497 MET 317 ENGINEERED MUTATION SEQRES 1 A 105 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 105 LEU VAL PRO ARG GLY SER HIS MET THR SER ILE LEU ASP SEQRES 3 A 105 ILE ARG GLN GLY PRO LYS GLU PRO PHE ARG ASP TYR VAL SEQRES 4 A 105 ASP ARG PHE TYR LYS THR LEU ARG ALA GLU GLN ALA SER SEQRES 5 A 105 GLN GLU VAL LYS ASN ALA ALA THR GLU THR LEU LEU VAL SEQRES 6 A 105 GLN ASN ALA ASN PRO ASP CYS LYS THR ILE LEU LYS ALA SEQRES 7 A 105 LEU GLY PRO GLY ALA THR LEU GLU GLU MET MET THR ALA SEQRES 8 A 105 CYS GLN GLY VAL GLY GLY PRO GLY HIS LYS ALA ARG VAL SEQRES 9 A 105 LEU HELIX 1 1 SER A 149 ILE A 153 5 5 HELIX 2 2 PRO A 160 GLN A 176 1 17 HELIX 3 3 ALA A 185 ASN A 193 1 9 HELIX 4 4 ASN A 195 GLY A 206 1 12 HELIX 5 5 THR A 210 VAL A 221 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000