HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-DEC-07 2JYN TITLE A NOVEL SOLUTION NMR STRUCTURE OF PROTEIN YST0336 FROM SACCHAROMYCES TITLE 2 CEREVISIAE. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 YT51/ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS TARGET YST0336 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0368 PROTEIN YPL225W; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: YPL225W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS NOVEL FOLD, YST0336, YT51, ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS, KEYWDS 2 OCSP, PSI, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, NESG, CYTOPLASM, STRUCTURAL GENOMICS, UNKNOWN KEYWDS 4 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.WU,A.YEE,C.FARES,A.LEMAK,A.GUTMANAS,A.SEMEST,C.H.ARROWSMITH, AUTHOR 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG),ONTARIO CENTRE FOR AUTHOR 3 STRUCTURAL PROTEOMICS (OCSP) REVDAT 5 29-MAY-24 2JYN 1 REMARK REVDAT 4 16-MAR-22 2JYN 1 REMARK REVDAT 3 24-FEB-09 2JYN 1 VERSN REVDAT 2 05-AUG-08 2JYN 1 AUTHOR KEYWDS REVDAT 1 25-DEC-07 2JYN 0 JRNL AUTH B.WU,A.YEE,C.FARES,A.LEMAK,A.GUTMANAS,A.SEMEST, JRNL AUTH 2 C.H.ARROWSMITH JRNL TITL A NOVEL SOLUTION NMR STRUCTURE OF PROTEIN YST0336 FROM JRNL TITL 2 SACCHAROMYCES CEREVISIAE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.3, CNS 1.0 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JYN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000100454. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN YST0336, 10 MM [U-100% REMARK 210 2H] TRIS, 300 MM SODIUM CHLORIDE, REMARK 210 0.01 % SODIUM AZIDE, 10 MM REMARK 210 BENZAMIDINE, 90% H2O/10% D2O; REMARK 210 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN YST0336, 10 MM [U-100% REMARK 210 2H] TRIS, 300 MM SODIUM CHLORIDE, REMARK 210 0.01 % SODIUM AZIDE, 10 MM REMARK 210 BENZAMIDINE, 99.9% D2O; 0.5 MM REMARK 210 [U-100% 13C; U-100% 15N] PROTEIN REMARK 210 YST0336, 10 MM [U-100% 2H] TRIS, REMARK 210 300 MM SODIUM CHLORIDE, 0.01 % REMARK 210 SODIUM AZIDE, 10 MM BENZAMIDINE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HN(CO)CA; 3D C(CO)NH; REMARK 210 3D H(CCO)NH; 3D HCCH-TOCSY; 3D REMARK 210 CCH-TOCSY; 3D HBHA(CO)NH; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 1H-13C NOESY AROMATIC; 2D 1H-13C REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.95, AUTOASSIGN, CYANA REMARK 210 2.1, AUTOSTRUCTURE REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 6 177.22 66.96 REMARK 500 1 LYS A 95 -46.38 -142.67 REMARK 500 1 ASN A 100 66.05 -111.99 REMARK 500 2 ALA A 9 95.13 -66.01 REMARK 500 2 LYS A 95 -59.62 -134.77 REMARK 500 2 PHE A 101 -51.48 -127.75 REMARK 500 2 SER A 110 39.92 -91.31 REMARK 500 2 GLN A 145 -74.56 -67.16 REMARK 500 3 ASN A 11 147.30 -173.21 REMARK 500 3 ASP A 98 36.55 -83.61 REMARK 500 4 ASP A 10 -93.65 64.37 REMARK 500 4 ASN A 11 -154.28 48.00 REMARK 500 4 PRO A 38 36.23 -81.65 REMARK 500 4 ASP A 98 36.71 -86.21 REMARK 500 5 ALA A 6 109.12 67.22 REMARK 500 5 ASP A 10 -76.15 -101.83 REMARK 500 5 LYS A 95 -66.51 -135.44 REMARK 500 5 ASP A 98 20.77 -77.82 REMARK 500 5 GLU A 112 -158.11 -81.56 REMARK 500 6 ALA A 9 160.75 82.12 REMARK 500 6 ASP A 10 94.16 -65.76 REMARK 500 6 ASN A 11 136.93 67.21 REMARK 500 6 LYS A 95 -63.53 -121.26 REMARK 500 6 ASP A 98 20.03 -79.66 REMARK 500 7 ASN A 5 169.67 65.72 REMARK 500 7 ALA A 9 -175.12 66.04 REMARK 500 7 GLU A 13 -74.74 -52.33 REMARK 500 7 LYS A 95 -64.75 -121.68 REMARK 500 7 ASP A 98 38.32 -88.62 REMARK 500 8 SER A 2 102.62 66.72 REMARK 500 8 ASN A 5 98.04 -61.98 REMARK 500 8 ALA A 9 87.45 58.28 REMARK 500 8 GLU A 112 -169.93 -79.16 REMARK 500 9 ALA A 6 -91.12 54.79 REMARK 500 9 GLU A 7 142.68 177.44 REMARK 500 9 SER A 36 -77.86 -96.98 REMARK 500 9 THR A 45 -157.89 -138.23 REMARK 500 9 LYS A 95 -57.63 -132.70 REMARK 500 9 GLU A 112 -82.50 -93.83 REMARK 500 9 TYR A 113 13.00 -158.99 REMARK 500 10 THR A 3 -90.22 -122.50 REMARK 500 10 PHE A 4 -90.21 -178.22 REMARK 500 10 ASP A 10 -163.13 -78.01 REMARK 500 10 ASN A 11 124.80 72.32 REMARK 500 10 PRO A 38 21.34 -77.32 REMARK 500 10 THR A 45 -155.62 -135.15 REMARK 500 10 PHE A 101 -67.10 -142.62 REMARK 500 11 SER A 2 -142.95 -143.49 REMARK 500 11 THR A 8 76.09 -153.09 REMARK 500 11 ASN A 11 125.04 70.11 REMARK 500 REMARK 500 THIS ENTRY HAS 90 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: YT51 RELATED DB: TARGETDB DBREF 2JYN A 1 146 UNP Q08971 YP225_YEAST 1 146 SEQRES 1 A 146 MET SER THR PHE ASN ALA GLU THR ALA ASP ASN LEU GLU SEQRES 2 A 146 ASP ILE GLU LYS GLN PHE ALA VAL VAL ALA VAL GLU GLN SEQRES 3 A 146 ALA GLU THR TYR TRP LYS LEU LEU THR SER VAL PRO GLY SEQRES 4 A 146 SER LYS LEU ARG LEU THR LYS PHE ASP ASP GLU ILE TYR SEQRES 5 A 146 GLU ASN PHE MET GLU ARG PHE PRO GLU TYR LYS ASP VAL SEQRES 6 A 146 GLU ARG VAL LYS LYS PHE THR GLU GLU GLU LEU LYS THR SEQRES 7 A 146 LYS GLU ALA LYS GLU ARG TRP ARG LYS PHE PHE THR ILE SEQRES 8 A 146 PHE GLU LYS LYS ILE GLU ASP TYR ASN PHE GLY THR LEU SEQRES 9 A 146 LEU ARG THR ASP ALA SER ALA GLU TYR GLY GLN PHE THR SEQRES 10 A 146 THR CYS PHE VAL VAL ARG LEU GLN PHE TYR ALA PHE GLU SEQRES 11 A 146 ILE ALA ARG ASN LYS HIS GLY LEU ASN ASP TRP ILE VAL SEQRES 12 A 146 GLY GLN LYS HELIX 1 1 ASN A 11 VAL A 37 1 27 HELIX 2 2 PHE A 47 PHE A 59 1 13 HELIX 3 3 ASP A 64 LYS A 70 1 7 HELIX 4 4 THR A 78 GLU A 93 1 16 HELIX 5 5 VAL A 122 HIS A 136 1 15 HELIX 6 6 ASN A 139 VAL A 143 5 5 SHEET 1 A 2 THR A 103 ARG A 106 0 SHEET 2 A 2 THR A 118 VAL A 121 -1 O CYS A 119 N LEU A 105 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1