HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-DEC-07 2JZ5 TITLE NMR SOLUTION STRUCTURE OF PROTEIN VPA0419 FROM VIBRIO TITLE 2 PARAHAEMOLYTICUS. NORTHEAST STRUCTURAL GENOMICS TARGET VPR68 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN VPA0419; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 17-99; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS RIMD 2210633; SOURCE 3 ORGANISM_TAXID: 223926; SOURCE 4 STRAIN: RIMD 2210633 / SEROTYPE O3:K6; SOURCE 5 GENE: VPA0419; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS GFT NMR, PROTEIN STRUCTURE, NESG, STRUCTURAL GENOMICS, UNKNOWN KEYWDS 2 FUNCTION, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.K.SINGARAPU,D.K.SUKUMARAN,A.ELETSKI,D.PARISH,L.ZHAO,M.JIANG, AUTHOR 2 M.MAGLAQUI,R.XIAO,J.LIU,M.C.BARAN,G.SWAPNA,T.ACTON,B.ROST, AUTHOR 3 G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG) REVDAT 6 14-JUN-23 2JZ5 1 REMARK REVDAT 5 19-FEB-20 2JZ5 1 REMARK SEQADV REVDAT 4 09-FEB-10 2JZ5 1 JRNL REVDAT 3 24-FEB-09 2JZ5 1 VERSN REVDAT 2 11-MAR-08 2JZ5 1 JRNL REVDAT 1 19-FEB-08 2JZ5 0 JRNL AUTH K.K.SINGARAPU,J.L.MILLS,R.XIAO,T.ACTON,M.PUNTA,M.FISCHER, JRNL AUTH 2 B.HONIG,B.ROST,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURES OF PROTEINS VPA0419 FROM VIBRIO JRNL TITL 2 PARAHAEMOLYTICUS AND YIIS FROM SHIGELLA FLEXNERI PROVIDE JRNL TITL 3 STRUCTURAL COVERAGE FOR PROTEIN DOMAIN FAMILY PFAM 04175. JRNL REF PROTEINS V. 78 779 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 19927321 JRNL DOI 10.1002/PROT.22630 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOASSIGN, CNS, CYANA REMARK 3 AUTHORS : ZIMMERMAN, MOSELEY, KULIKOWSKI AND MONTELIONE REMARK 3 (AUTOASSIGN), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JZ5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100472. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.07 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN VPA0419, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 4,3 D GFT HNNACBCA; 4,3 D GFT REMARK 210 CABCACONHN; 4,3D HABCABCONHN; 4, REMARK 210 3D GFT HCCH COSY; 3D HCCH-COSY; REMARK 210 3D SIMNOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE, NMRPIPE, PSVS, REMARK 210 TALOS, VNMRJ REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 ASP A 16 HB3 ARG A 62 1.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 9 -163.79 -102.60 REMARK 500 1 LEU A 84 80.11 54.11 REMARK 500 1 HIS A 88 21.88 -142.51 REMARK 500 1 HIS A 89 -25.93 74.17 REMARK 500 2 LYS A 9 -169.70 -106.22 REMARK 500 2 HIS A 87 -40.90 -169.98 REMARK 500 3 PHE A 6 -173.41 55.47 REMARK 500 3 GLU A 85 169.22 67.73 REMARK 500 3 HIS A 86 79.82 -110.52 REMARK 500 5 LYS A 9 -168.49 -104.06 REMARK 500 5 GLU A 55 46.45 -106.48 REMARK 500 5 HIS A 86 87.42 -152.47 REMARK 500 5 HIS A 88 -178.55 62.74 REMARK 500 6 ALA A 82 39.31 -99.90 REMARK 500 6 HIS A 86 -75.61 -58.75 REMARK 500 6 HIS A 89 95.15 -50.16 REMARK 500 6 HIS A 90 -64.81 160.07 REMARK 500 7 THR A 53 -168.41 -125.84 REMARK 500 7 GLU A 85 -128.61 62.78 REMARK 500 8 HIS A 89 138.09 71.80 REMARK 500 9 PHE A 6 -171.44 53.43 REMARK 500 9 SER A 56 98.29 -65.97 REMARK 500 9 HIS A 86 43.14 -82.36 REMARK 500 9 HIS A 87 -50.97 -153.77 REMARK 500 9 HIS A 88 -71.25 68.70 REMARK 500 11 THR A 53 -165.95 -116.65 REMARK 500 11 LEU A 84 51.67 -109.70 REMARK 500 11 HIS A 88 -59.81 71.68 REMARK 500 11 HIS A 89 -45.73 72.63 REMARK 500 12 ALA A 82 32.35 -97.59 REMARK 500 12 ARG A 83 131.37 72.69 REMARK 500 12 LEU A 84 63.95 -100.91 REMARK 500 13 PHE A 6 -170.27 59.23 REMARK 500 13 LEU A 84 33.28 -83.26 REMARK 500 13 HIS A 86 94.44 -164.12 REMARK 500 13 HIS A 88 90.58 61.94 REMARK 500 13 HIS A 89 -64.84 -150.47 REMARK 500 13 HIS A 90 140.85 69.58 REMARK 500 14 THR A 53 -166.54 -114.35 REMARK 500 14 PHE A 65 -169.87 -100.13 REMARK 500 14 GLU A 85 -157.36 52.33 REMARK 500 14 HIS A 86 85.05 -162.21 REMARK 500 15 GLU A 85 -167.32 -122.25 REMARK 500 15 HIS A 87 38.84 -83.26 REMARK 500 15 HIS A 88 56.95 -142.71 REMARK 500 15 HIS A 89 86.51 -168.34 REMARK 500 16 GLU A 55 45.92 -103.05 REMARK 500 16 ALA A 82 76.12 -113.41 REMARK 500 17 LEU A 84 36.43 -82.56 REMARK 500 17 GLU A 85 176.81 68.69 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: VPR68 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15608 RELATED DB: BMRB DBREF 2JZ5 A 1 83 UNP Q87J34 Q87J34_VIBPA 17 99 SEQADV 2JZ5 LEU A 84 UNP Q87J34 EXPRESSION TAG SEQADV 2JZ5 GLU A 85 UNP Q87J34 EXPRESSION TAG SEQADV 2JZ5 HIS A 86 UNP Q87J34 EXPRESSION TAG SEQADV 2JZ5 HIS A 87 UNP Q87J34 EXPRESSION TAG SEQADV 2JZ5 HIS A 88 UNP Q87J34 EXPRESSION TAG SEQADV 2JZ5 HIS A 89 UNP Q87J34 EXPRESSION TAG SEQADV 2JZ5 HIS A 90 UNP Q87J34 EXPRESSION TAG SEQADV 2JZ5 HIS A 91 UNP Q87J34 EXPRESSION TAG SEQRES 1 A 91 ALA GLY GLU ILE GLY PHE ILE ILE LYS GLU GLY ASP GLU SEQRES 2 A 91 VAL ALA ASP VAL THR ILE PHE ALA GLU THR LYS ASP ALA SEQRES 3 A 91 LEU GLU SER GLU LEU ALA LYS TYR ILE GLU LEU ALA LYS SEQRES 4 A 91 SER VAL CYS ALA GLY VAL GLU TYR ASN VAL SER GLU LEU SEQRES 5 A 91 THR GLU GLU SER LYS GLU LEU THR ALA ARG PHE LYS PHE SEQRES 6 A 91 GLU VAL SER ALA GLU LYS LEU ILE PHE GLU LEU LYS THR SEQRES 7 A 91 ARG SER LEU ALA ARG LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 23 CYS A 42 1 20 HELIX 2 2 VAL A 67 ALA A 82 1 16 SHEET 1 A 3 VAL A 14 PHE A 20 0 SHEET 2 A 3 GLU A 58 LYS A 64 -1 O PHE A 63 N ALA A 15 SHEET 3 A 3 GLU A 46 ASN A 48 -1 N GLU A 46 O LYS A 64 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1