HEADER SELENIUM-BINDING PROTEIN 28-DEC-07 2JZ7 TITLE SOLUTION NMR STRUCTURE OF SELENIUM-BINDING PROTEIN FROM METHANOCOCCUS TITLE 2 VANNIELII COMPND MOL_ID: 1; COMPND 2 MOLECULE: SELENIUM BINDING PROTEIN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCOCCUS VANNIELII; SOURCE 3 ORGANISM_TAXID: 2187; SOURCE 4 GENE: SBP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS SELENIUM, SELENIUM-BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.SUZUKI,T.C.STADTMAN,N.TJANDRA REVDAT 5 16-MAR-22 2JZ7 1 REMARK REVDAT 4 24-FEB-09 2JZ7 1 VERSN REVDAT 3 30-SEP-08 2JZ7 1 JRNL REVDAT 2 02-SEP-08 2JZ7 1 JRNL REVDAT 1 22-JUL-08 2JZ7 0 JRNL AUTH M.SUZUKI,D.Y.LEE,N.INYAMAH,T.C.STADTMAN,N.TJANDRA JRNL TITL SOLUTION NMR STRUCTURE OF SELENIUM-BINDING PROTEIN FROM JRNL TITL 2 METHANOCOCCUS VANNIELII. JRNL REF J.BIOL.CHEM. V. 283 25936 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18650445 JRNL DOI 10.1074/JBC.M803773200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), SCHWIETERS, C.D. ET AL. REMARK 3 (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JZ7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000100474. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.1-1 MM [U-100% 15N] PROTEIN, REMARK 210 90% H2O/10% D2O; 0.1-1 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN, 90% REMARK 210 H2O/10% D2O; 0.1-1 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN, 100% REMARK 210 D2O; 0.1-1 MM [U-13C; U-15N; U- REMARK 210 2H] PROTEIN, 90% H2O/10% D2O; REMARK 210 0.1-1 MM [U-10% 13C; U-100% 15N] REMARK 210 PROTEIN, 100% D2O; 0.1-1 MM [U- REMARK 210 13C; U-15N; U-2H] PROTEIN, 12 MG/ REMARK 210 ML PF1 PHAGE, 90% H2O/10% D2O; REMARK 210 0.1-1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 12 MG/ML PF1 PHAGE, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED NOESY; REMARK 210 4D_13C/15N-SEPARATED_NOESY; 4D_ REMARK 210 13C/13C-SEPARATED_NOESY; 3D CT- REMARK 210 HNCO; BRCT-3DJ; HNCO TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, PIPP, X-PLOR NIH REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H THR A 11 HG1 THR B 69 1.34 REMARK 500 O LEU E 40 H VAL E 44 1.52 REMARK 500 O ASP A 5 H PHE A 7 1.58 REMARK 500 OG1 THR A 11 OG1 THR B 69 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 2 92.27 53.02 REMARK 500 1 ASP A 5 -88.90 -106.11 REMARK 500 1 LYS A 6 -67.93 59.52 REMARK 500 1 ALA A 12 91.47 54.56 REMARK 500 1 ASP A 13 -128.04 -162.93 REMARK 500 1 GLU A 14 -17.74 -173.68 REMARK 500 1 ASN A 32 120.26 77.14 REMARK 500 1 ALA A 54 87.79 75.01 REMARK 500 1 PHE A 55 50.51 -115.05 REMARK 500 1 ILE A 57 108.90 42.22 REMARK 500 1 ASP A 61 -31.50 -160.83 REMARK 500 1 LYS A 63 70.17 -167.25 REMARK 500 1 ALA A 76 174.42 54.78 REMARK 500 1 GLN A 77 -153.51 -91.20 REMARK 500 1 THR A 79 -81.62 -85.60 REMARK 500 1 GLU B 4 -80.20 53.60 REMARK 500 1 LYS B 6 -63.91 -134.95 REMARK 500 1 ASP B 13 111.73 -160.40 REMARK 500 1 SER B 30 -164.11 163.30 REMARK 500 1 ASN B 32 112.46 76.91 REMARK 500 1 ALA B 54 -146.59 90.38 REMARK 500 1 PHE B 55 -101.52 120.71 REMARK 500 1 ARG B 56 161.48 55.52 REMARK 500 1 CYS B 59 75.80 50.50 REMARK 500 1 ASP B 61 14.58 53.22 REMARK 500 1 PHE B 64 -111.02 -146.01 REMARK 500 1 LEU B 65 108.44 -175.57 REMARK 500 1 ASP B 74 4.74 -168.95 REMARK 500 1 ALA B 76 -175.57 56.17 REMARK 500 1 GLN B 77 -139.12 -95.36 REMARK 500 1 ASP C 5 -96.42 -102.63 REMARK 500 1 LYS C 6 -95.63 -133.35 REMARK 500 1 THR C 11 79.00 -114.60 REMARK 500 1 ALA C 12 -10.21 -179.04 REMARK 500 1 ASP C 13 83.10 43.73 REMARK 500 1 GLU C 14 -87.86 -154.72 REMARK 500 1 THR C 58 90.90 175.57 REMARK 500 1 ALA C 60 -73.79 -113.40 REMARK 500 1 ASP C 61 -71.46 -75.08 REMARK 500 1 LYS C 63 -115.15 -80.46 REMARK 500 1 PHE C 64 -174.82 -61.92 REMARK 500 1 ASP C 74 -171.91 92.66 REMARK 500 1 GLN C 77 17.80 53.52 REMARK 500 1 THR C 79 -55.45 -131.32 REMARK 500 1 MET C 80 -61.07 -137.66 REMARK 500 1 ILE D 2 -33.39 -164.74 REMARK 500 1 ASP D 5 -0.01 -154.69 REMARK 500 1 GLU D 14 -18.03 -147.09 REMARK 500 1 ASN D 32 117.10 79.23 REMARK 500 1 THR D 58 87.77 28.57 REMARK 500 REMARK 500 THIS ENTRY HAS 795 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2JZ7 A 1 81 UNP Q5UBU1 Q5UBU1_METVA 1 81 DBREF 2JZ7 B 1 81 UNP Q5UBU1 Q5UBU1_METVA 1 81 DBREF 2JZ7 C 1 81 UNP Q5UBU1 Q5UBU1_METVA 1 81 DBREF 2JZ7 D 1 81 UNP Q5UBU1 Q5UBU1_METVA 1 81 DBREF 2JZ7 E 1 81 UNP Q5UBU1 Q5UBU1_METVA 1 81 SEQRES 1 A 81 MET ILE PHE GLU ASP LYS PHE ILE ILE THR THR ALA ASP SEQRES 2 A 81 GLU ILE PRO GLY LEU GLN LEU TYR SER LEU GLY ILE ALA SEQRES 3 A 81 SER THR ILE SER ASP ASN VAL ASP GLU ILE VAL GLU ASN SEQRES 4 A 81 LEU ARG LYS GLN VAL LYS ALA LYS GLY GLY MET GLY LEU SEQRES 5 A 81 ILE ALA PHE ARG ILE THR CYS ALA ASP GLY LYS PHE LEU SEQRES 6 A 81 GLY TYR GLY THR ILE VAL LYS ALA ASP GLU ALA GLN PHE SEQRES 7 A 81 THR MET ALA SEQRES 1 B 81 MET ILE PHE GLU ASP LYS PHE ILE ILE THR THR ALA ASP SEQRES 2 B 81 GLU ILE PRO GLY LEU GLN LEU TYR SER LEU GLY ILE ALA SEQRES 3 B 81 SER THR ILE SER ASP ASN VAL ASP GLU ILE VAL GLU ASN SEQRES 4 B 81 LEU ARG LYS GLN VAL LYS ALA LYS GLY GLY MET GLY LEU SEQRES 5 B 81 ILE ALA PHE ARG ILE THR CYS ALA ASP GLY LYS PHE LEU SEQRES 6 B 81 GLY TYR GLY THR ILE VAL LYS ALA ASP GLU ALA GLN PHE SEQRES 7 B 81 THR MET ALA SEQRES 1 C 81 MET ILE PHE GLU ASP LYS PHE ILE ILE THR THR ALA ASP SEQRES 2 C 81 GLU ILE PRO GLY LEU GLN LEU TYR SER LEU GLY ILE ALA SEQRES 3 C 81 SER THR ILE SER ASP ASN VAL ASP GLU ILE VAL GLU ASN SEQRES 4 C 81 LEU ARG LYS GLN VAL LYS ALA LYS GLY GLY MET GLY LEU SEQRES 5 C 81 ILE ALA PHE ARG ILE THR CYS ALA ASP GLY LYS PHE LEU SEQRES 6 C 81 GLY TYR GLY THR ILE VAL LYS ALA ASP GLU ALA GLN PHE SEQRES 7 C 81 THR MET ALA SEQRES 1 D 81 MET ILE PHE GLU ASP LYS PHE ILE ILE THR THR ALA ASP SEQRES 2 D 81 GLU ILE PRO GLY LEU GLN LEU TYR SER LEU GLY ILE ALA SEQRES 3 D 81 SER THR ILE SER ASP ASN VAL ASP GLU ILE VAL GLU ASN SEQRES 4 D 81 LEU ARG LYS GLN VAL LYS ALA LYS GLY GLY MET GLY LEU SEQRES 5 D 81 ILE ALA PHE ARG ILE THR CYS ALA ASP GLY LYS PHE LEU SEQRES 6 D 81 GLY TYR GLY THR ILE VAL LYS ALA ASP GLU ALA GLN PHE SEQRES 7 D 81 THR MET ALA SEQRES 1 E 81 MET ILE PHE GLU ASP LYS PHE ILE ILE THR THR ALA ASP SEQRES 2 E 81 GLU ILE PRO GLY LEU GLN LEU TYR SER LEU GLY ILE ALA SEQRES 3 E 81 SER THR ILE SER ASP ASN VAL ASP GLU ILE VAL GLU ASN SEQRES 4 E 81 LEU ARG LYS GLN VAL LYS ALA LYS GLY GLY MET GLY LEU SEQRES 5 E 81 ILE ALA PHE ARG ILE THR CYS ALA ASP GLY LYS PHE LEU SEQRES 6 E 81 GLY TYR GLY THR ILE VAL LYS ALA ASP GLU ALA GLN PHE SEQRES 7 E 81 THR MET ALA HELIX 1 1 ASN A 32 LYS A 47 1 16 HELIX 2 2 ASN B 32 LYS B 47 1 16 HELIX 3 3 ASN C 32 GLY C 48 1 17 HELIX 4 4 ASN D 32 GLY D 48 1 17 HELIX 5 5 ASN E 32 LYS E 47 1 16 SHEET 1 A 4 ILE A 8 THR A 10 0 SHEET 2 A 4 GLY A 51 ILE A 53 1 O LEU A 52 N ILE A 8 SHEET 3 A 4 GLY A 68 LYS A 72 -1 O THR A 69 N ILE A 53 SHEET 4 A 4 TYR A 21 ALA A 26 -1 N ALA A 26 O GLY A 68 SHEET 1 B 4 ILE B 8 THR B 10 0 SHEET 2 B 4 GLY B 51 ILE B 53 1 O LEU B 52 N THR B 10 SHEET 3 B 4 GLY B 66 LYS B 72 -1 O VAL B 71 N GLY B 51 SHEET 4 B 4 TYR B 21 THR B 28 -1 N THR B 28 O GLY B 66 SHEET 1 C 2 ILE C 8 THR C 10 0 SHEET 2 C 2 GLY C 51 ILE C 53 1 O LEU C 52 N THR C 10 SHEET 1 D 2 TYR C 21 THR C 28 0 SHEET 2 D 2 GLY C 66 LYS C 72 -1 O LYS C 72 N TYR C 21 SHEET 1 E 4 ILE D 8 ILE D 9 0 SHEET 2 E 4 GLY D 51 ILE D 53 1 O LEU D 52 N ILE D 8 SHEET 3 E 4 GLY D 68 LYS D 72 -1 O THR D 69 N ILE D 53 SHEET 4 E 4 TYR D 21 ALA D 26 -1 N ALA D 26 O GLY D 68 SHEET 1 F 4 ILE E 8 THR E 10 0 SHEET 2 F 4 GLY E 51 ILE E 53 1 O LEU E 52 N ILE E 8 SHEET 3 F 4 GLY E 68 LYS E 72 -1 O VAL E 71 N GLY E 51 SHEET 4 F 4 TYR E 21 ALA E 26 -1 N ALA E 26 O GLY E 68 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1