HEADER TRANSFERASE/TRANSCRIPTION 02-JAN-08 2JZB TITLE SOLUTION STRUCTURE OF THE COMPLEX BETWEEN E.COLI NUSA-AR2 AND RNAP- TITLE 2 ACTD COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNAP SUBUNIT ALPHA, TRANSCRIPTASE SUBUNIT ALPHA, RNA COMPND 5 POLYMERASE SUBUNIT ALPHA; COMPND 6 EC: 2.7.7.6; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TRANSCRIPTION ELONGATION PROTEIN NUSA; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: N UTILIZATION SUBSTANCE PROTEIN A, L FACTOR; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 633; SOURCE 4 GENE: RPOA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET19B; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 ORGANISM_TAXID: 562; SOURCE 11 GENE: NUSA; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_VECTOR: PET19B KEYWDS TRANSCRIPTION, NUSA, RNAP, HELIX-HAIRPIN-HELIX, DNA-DIRECTED RNA KEYWDS 2 POLYMERASE, NUCLEOTIDYLTRANSFERASE, TRANSFERASE, RNA-BINDING, STRESS KEYWDS 3 RESPONSE, TRANSCRIPTION ANTITERMINATION, TRANSCRIPTION REGULATION, KEYWDS 4 TRANSCRIPTION TERMINATION, TRANSFERASE-TRANSCRIPTION COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.PRASCH,K.SCHWEIMER,P.ROESCH REVDAT 2 19-FEB-20 2JZB 1 REMARK SEQADV REVDAT 1 28-APR-09 2JZB 0 JRNL AUTH S.PRASCH,K.SCHWEIMER,P.ROESCH JRNL TITL STRUCTURAL BASIS OF TRANSCRIPTION ELONGATION CONTROL: THE JRNL TITL 2 NUSA-ACTD COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW, X-PLOR NIH REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JZB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100478. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-98% 13C; U-98% 15N] REMARK 210 ACTD, 2.1 MM AR2, 10 MM REMARK 210 POTASSIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 1 MM BETA- REMARK 210 MERCAPTOETHANOL, 90% H2O/10% D2O; REMARK 210 0.7 MM [U-98% 13C; U-98% 15N] REMARK 210 AR2, 2.1 MM ACTD, 10 MM REMARK 210 POTASSIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 1 MM BETA- REMARK 210 MERCAPTOETHANOL, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 240 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 231 REMARK 465 PRO A 232 REMARK 465 ASP A 233 REMARK 465 LEU A 234 REMARK 465 ARG A 235 REMARK 465 ASP A 236 REMARK 465 VAL A 237 REMARK 465 ARG A 238 REMARK 465 GLN A 239 REMARK 465 PRO A 240 REMARK 465 GLU A 241 REMARK 465 VAL A 242 REMARK 465 LYS A 243 REMARK 465 GLU A 244 REMARK 465 GLU A 245 REMARK 465 LYS A 246 REMARK 465 PRO A 247 REMARK 465 GLU A 248 REMARK 465 GLY B 422 REMARK 465 PRO B 423 REMARK 465 SER B 424 REMARK 465 LEU B 425 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 256 H ASP A 259 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 274 36.48 71.89 REMARK 500 1 SER A 313 32.62 71.45 REMARK 500 1 ASN A 320 -64.29 -135.05 REMARK 500 1 TRP A 321 -59.36 164.73 REMARK 500 1 ALA A 327 -166.73 44.47 REMARK 500 1 ARG B 451 31.60 -90.65 REMARK 500 1 CYS B 454 -36.01 -135.01 REMARK 500 2 ALA A 274 41.59 72.07 REMARK 500 2 ASN A 320 -81.22 -122.45 REMARK 500 2 TRP A 321 -65.98 165.24 REMARK 500 2 ARG B 451 32.06 -93.24 REMARK 500 2 CYS B 454 -35.88 -135.05 REMARK 500 3 ALA A 274 38.14 71.93 REMARK 500 3 ASN A 320 -71.26 -125.94 REMARK 500 3 TRP A 321 -68.47 167.43 REMARK 500 3 CYS B 454 -36.96 -135.01 REMARK 500 4 SER A 313 63.23 61.31 REMARK 500 4 ASN A 320 -59.04 -126.64 REMARK 500 4 TRP A 321 -65.52 163.40 REMARK 500 4 ARG B 451 30.38 -91.39 REMARK 500 4 CYS B 454 -37.17 -135.17 REMARK 500 5 ALA A 274 37.42 72.12 REMARK 500 5 ASN A 320 -75.30 -119.10 REMARK 500 5 TRP A 321 -58.30 168.73 REMARK 500 6 ASN A 320 -71.46 -122.08 REMARK 500 6 TRP A 321 -57.57 167.59 REMARK 500 6 ARG B 451 33.26 -89.32 REMARK 500 6 CYS B 454 -33.63 -131.82 REMARK 500 7 LEU A 262 -162.13 -70.18 REMARK 500 7 ARG A 310 16.99 56.88 REMARK 500 7 ASN A 320 -69.19 -125.31 REMARK 500 7 TRP A 321 -66.41 166.08 REMARK 500 8 SER A 313 66.85 63.67 REMARK 500 8 ASN A 320 -81.57 -117.41 REMARK 500 8 TRP A 321 -62.23 165.89 REMARK 500 8 CYS B 454 -35.15 -135.08 REMARK 500 9 ARG A 310 14.17 59.32 REMARK 500 9 ASN A 320 -69.42 -122.06 REMARK 500 9 TRP A 321 -58.12 168.42 REMARK 500 9 CYS B 454 -38.52 -135.11 REMARK 500 10 LEU A 262 -174.53 -59.72 REMARK 500 10 ALA A 274 34.34 72.12 REMARK 500 10 SER A 313 43.96 72.21 REMARK 500 11 ALA A 274 34.30 70.82 REMARK 500 11 SER A 313 -141.78 84.56 REMARK 500 11 ASN A 320 -56.35 -131.30 REMARK 500 11 TRP A 321 -61.13 164.80 REMARK 500 12 LEU A 262 -170.08 -54.41 REMARK 500 12 ALA A 274 33.32 70.63 REMARK 500 12 ARG A 310 19.35 53.01 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 255 0.18 SIDE CHAIN REMARK 500 1 ARG A 265 0.17 SIDE CHAIN REMARK 500 1 ARG A 284 0.27 SIDE CHAIN REMARK 500 1 ARG A 310 0.23 SIDE CHAIN REMARK 500 1 ARG A 317 0.20 SIDE CHAIN REMARK 500 1 ARG B 442 0.32 SIDE CHAIN REMARK 500 1 ARG B 451 0.20 SIDE CHAIN REMARK 500 1 ARG B 486 0.28 SIDE CHAIN REMARK 500 2 ARG A 255 0.22 SIDE CHAIN REMARK 500 2 ARG A 265 0.23 SIDE CHAIN REMARK 500 2 ARG A 284 0.26 SIDE CHAIN REMARK 500 2 ARG A 310 0.28 SIDE CHAIN REMARK 500 2 ARG A 317 0.31 SIDE CHAIN REMARK 500 2 ARG B 442 0.20 SIDE CHAIN REMARK 500 2 ARG B 451 0.14 SIDE CHAIN REMARK 500 2 ARG B 486 0.30 SIDE CHAIN REMARK 500 3 ARG A 255 0.25 SIDE CHAIN REMARK 500 3 ARG A 265 0.30 SIDE CHAIN REMARK 500 3 ARG A 284 0.29 SIDE CHAIN REMARK 500 3 ARG A 310 0.20 SIDE CHAIN REMARK 500 3 ARG A 317 0.28 SIDE CHAIN REMARK 500 3 ARG B 442 0.29 SIDE CHAIN REMARK 500 3 ARG B 486 0.21 SIDE CHAIN REMARK 500 4 ARG A 255 0.31 SIDE CHAIN REMARK 500 4 ARG A 265 0.18 SIDE CHAIN REMARK 500 4 ARG A 284 0.15 SIDE CHAIN REMARK 500 4 ARG A 310 0.32 SIDE CHAIN REMARK 500 4 ARG A 317 0.32 SIDE CHAIN REMARK 500 4 ARG B 442 0.20 SIDE CHAIN REMARK 500 4 ARG B 451 0.32 SIDE CHAIN REMARK 500 4 ARG B 486 0.21 SIDE CHAIN REMARK 500 5 ARG A 255 0.32 SIDE CHAIN REMARK 500 5 ARG A 265 0.29 SIDE CHAIN REMARK 500 5 ARG A 284 0.32 SIDE CHAIN REMARK 500 5 ARG A 310 0.27 SIDE CHAIN REMARK 500 5 ARG A 317 0.23 SIDE CHAIN REMARK 500 5 ARG B 442 0.23 SIDE CHAIN REMARK 500 5 ARG B 451 0.27 SIDE CHAIN REMARK 500 5 ARG B 486 0.32 SIDE CHAIN REMARK 500 6 ARG A 255 0.32 SIDE CHAIN REMARK 500 6 ARG A 265 0.29 SIDE CHAIN REMARK 500 6 ARG A 284 0.29 SIDE CHAIN REMARK 500 6 ARG A 310 0.32 SIDE CHAIN REMARK 500 6 ARG A 317 0.32 SIDE CHAIN REMARK 500 6 ARG B 442 0.32 SIDE CHAIN REMARK 500 6 ARG B 451 0.27 SIDE CHAIN REMARK 500 6 ARG B 486 0.32 SIDE CHAIN REMARK 500 7 ARG A 255 0.31 SIDE CHAIN REMARK 500 7 ARG A 265 0.30 SIDE CHAIN REMARK 500 7 ARG A 284 0.20 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 154 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15614 RELATED DB: BMRB DBREF 2JZB A 233 329 UNP P0A7Z4 RPOA_ECOLI 233 329 DBREF 2JZB B 424 495 UNP P0AFF6 NUSA_ECOLI 424 495 SEQADV 2JZB GLY A 231 UNP P0A7Z4 EXPRESSION TAG SEQADV 2JZB PRO A 232 UNP P0A7Z4 EXPRESSION TAG SEQADV 2JZB GLY B 422 UNP P0AFF6 EXPRESSION TAG SEQADV 2JZB PRO B 423 UNP P0AFF6 EXPRESSION TAG SEQRES 1 A 99 GLY PRO ASP LEU ARG ASP VAL ARG GLN PRO GLU VAL LYS SEQRES 2 A 99 GLU GLU LYS PRO GLU PHE ASP PRO ILE LEU LEU ARG PRO SEQRES 3 A 99 VAL ASP ASP LEU GLU LEU THR VAL ARG SER ALA ASN CYS SEQRES 4 A 99 LEU LYS ALA GLU ALA ILE HIS TYR ILE GLY ASP LEU VAL SEQRES 5 A 99 GLN ARG THR GLU VAL GLU LEU LEU LYS THR PRO ASN LEU SEQRES 6 A 99 GLY LYS LYS SER LEU THR GLU ILE LYS ASP VAL LEU ALA SEQRES 7 A 99 SER ARG GLY LEU SER LEU GLY MET ARG LEU GLU ASN TRP SEQRES 8 A 99 PRO PRO ALA SER ILE ALA ASP GLU SEQRES 1 B 74 GLY PRO SER LEU GLY ASP ASN LYS PRO ALA ASP ASP LEU SEQRES 2 B 74 LEU ASN LEU GLU GLY VAL ASP ARG ASP LEU ALA PHE LYS SEQRES 3 B 74 LEU ALA ALA ARG GLY VAL CYS THR LEU GLU ASP LEU ALA SEQRES 4 B 74 GLU GLN GLY ILE ASP ASP LEU ALA ASP ILE GLU GLY LEU SEQRES 5 B 74 THR ASP GLU LYS ALA GLY ALA LEU ILE MET ALA ALA ARG SEQRES 6 B 74 ASN ILE CYS TRP PHE GLY ASP GLU ALA HELIX 1 1 ASP A 250 ARG A 255 1 6 HELIX 2 2 PRO A 256 LEU A 260 5 5 HELIX 3 3 THR A 263 ALA A 272 1 10 HELIX 4 4 TYR A 277 ARG A 284 1 8 HELIX 5 5 THR A 285 LYS A 291 1 7 HELIX 6 6 GLY A 296 SER A 309 1 14 HELIX 7 7 ALA B 431 ASN B 436 1 6 HELIX 8 8 ASP B 441 ALA B 450 1 10 HELIX 9 9 THR B 455 GLN B 462 1 8 HELIX 10 10 GLY B 463 ASP B 469 1 7 HELIX 11 11 THR B 474 PHE B 491 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1