HEADER TRANSFERASE 04-JAN-08 2JZC TITLE NMR SOLUTION STRUCTURE OF ALG13: THE SUGAR DONOR SUBUNIT OF A YEAST N- TITLE 2 ACETYLGLUCOSAMINE TRANSFERASE. NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM TARGET YG1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE TRANSFERASE SUBUNIT ALG13; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARAGINE-LINKED GLYCOSYLATION PROTEIN 13; COMPND 5 EC: 2.4.1.141; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: S288C; SOURCE 6 ATCC: 204508; SOURCE 7 GENE: ALG13, YGL047W; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ROSSMANN-LIKE FOLD, ENDOPLASMIC RETICULUM, GLYCOSYLTRANSFERASE, KEYWDS 2 TRANSFERASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.WANG,T.WELDEGHORGHIS,G.ZHANG,B.IMEPRIALI,G.T.MONTELIONE, AUTHOR 2 J.H.PRESTEGARD,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 14-JUN-23 2JZC 1 REMARK REVDAT 4 19-FEB-20 2JZC 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JZC 1 VERSN REVDAT 2 01-JUL-08 2JZC 1 JRNL REVDAT 1 19-FEB-08 2JZC 0 JRNL AUTH X.WANG,T.WELDEGHIORGHIS,G.ZHANG,B.IMPERIALI,J.H.PRESTEGARD JRNL TITL SOLUTION STRUCTURE OF ALG13: THE SUGAR DONOR SUBUNIT OF A JRNL TITL 2 YEAST N-ACETYLGLUCOSAMINE TRANSFERASE. JRNL REF STRUCTURE V. 16 965 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18547528 JRNL DOI 10.1016/J.STR.2008.03.010 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING WITH THE DEFAULT REMARK 3 XPLOR-NIH REFINEMENT PROTOCOL REMARK 4 REMARK 4 2JZC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100479. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 297 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.35 MM [U-13C; U-15N; U-2H] REMARK 210 ALG13, 20 MM SODIUM PHOSPHATE, 100 MM SODIUM CHLORIDE, 0.02 % REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O; 0.35 MM [U-15N;U-2H; 13C,1H LEU, REMARK 210 VAL, ILE.D1 METHYL] ALG13, 20 MM SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 95% H2O/5% D2O; 0.35 MM [U-15N;U-2H; 13C,1H LEU, VAL, REMARK 210 ILE.D1 METHYL; 1H-PHE] ALG13, 20 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 95% H2O/5% D2O; 0.35 MM [U-13C; U-15N; U-2H] REMARK 210 ALG13, 20 MM SODIUM PHOSPHATE, 100 MM SODIUM CHLORIDE, 0.02 % REMARK 210 SODIUM AZIDE, 3.5 % W/V ACRYLAMIDE, 3.5 % W/V (3- REMARK 210 ACRYLAMIDOPROPYL)-TRIMETHYLAMMONIUM CHLORIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HN(COCA)CB; 3D REMARK 210 HNCACO; 3D HNCO; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 2D S3-TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 LEU A 22 REMARK 465 GLU A 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 26 79.00 57.12 REMARK 500 1 GLU A 28 -80.29 -167.65 REMARK 500 1 ALA A 37 -179.55 -66.13 REMARK 500 1 SER A 50 -164.60 -129.71 REMARK 500 1 PHE A 62 159.66 -27.02 REMARK 500 1 VAL A 63 -73.84 -149.19 REMARK 500 1 GLN A 68 137.13 -170.26 REMARK 500 1 ARG A 71 -74.75 -168.71 REMARK 500 1 SER A 74 18.59 59.07 REMARK 500 1 SER A 75 -163.85 50.46 REMARK 500 1 GLU A 76 -44.74 -145.20 REMARK 500 1 PHE A 77 108.41 54.36 REMARK 500 1 GLU A 78 44.65 -70.44 REMARK 500 1 GLU A 89 -108.98 -72.38 REMARK 500 1 SER A 90 94.93 -32.04 REMARK 500 1 GLN A 91 94.22 -58.93 REMARK 500 1 LYS A 92 98.65 -168.53 REMARK 500 1 PRO A 94 -76.93 -54.97 REMARK 500 1 ASP A 96 -119.93 58.25 REMARK 500 1 GLN A 97 -93.04 36.91 REMARK 500 1 ALA A 104 62.07 -108.40 REMARK 500 1 MET A 110 -79.55 56.76 REMARK 500 1 ASN A 111 78.30 -168.09 REMARK 500 1 LYS A 113 -75.96 -64.59 REMARK 500 1 PHE A 119 52.83 -155.17 REMARK 500 1 THR A 123 27.87 -149.61 REMARK 500 1 LYS A 124 -5.77 -170.35 REMARK 500 1 TYR A 132 -66.67 -100.64 REMARK 500 1 SER A 133 84.76 55.51 REMARK 500 1 ASP A 134 -47.80 -149.23 REMARK 500 1 ALA A 140 10.28 -173.14 REMARK 500 1 ASN A 152 26.49 42.34 REMARK 500 1 MET A 164 -27.76 -165.31 REMARK 500 1 TYR A 180 42.84 -169.95 REMARK 500 1 VAL A 181 137.81 -31.91 REMARK 500 1 TRP A 182 101.70 -54.43 REMARK 500 1 PRO A 186 82.86 -56.89 REMARK 500 1 THR A 200 -33.02 -141.37 REMARK 500 1 PRO A 205 101.95 -45.39 REMARK 500 1 SER A 209 109.75 55.88 REMARK 500 1 HIS A 210 66.93 -67.53 REMARK 500 1 SER A 213 -11.54 -49.44 REMARK 500 1 ILE A 222 -88.69 56.63 REMARK 500 2 ILE A 26 74.12 56.31 REMARK 500 2 ALA A 37 -87.12 -169.42 REMARK 500 2 PRO A 40 -178.77 -46.22 REMARK 500 2 SER A 50 -167.71 -110.59 REMARK 500 2 PHE A 62 -176.84 -49.30 REMARK 500 2 VAL A 63 -42.93 -172.48 REMARK 500 2 ARG A 64 105.84 -168.38 REMARK 500 REMARK 500 THIS ENTRY HAS 410 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15617 RELATED DB: BMRB REMARK 900 RELATED ID: YG1 RELATED DB: TARGETDB DBREF 2JZC A 24 224 UNP P53178 ALG13_YEAST 2 202 SEQADV 2JZC MET A 1 UNP P53178 EXPRESSION TAG SEQADV 2JZC GLY A 2 UNP P53178 EXPRESSION TAG SEQADV 2JZC SER A 3 UNP P53178 EXPRESSION TAG SEQADV 2JZC SER A 4 UNP P53178 EXPRESSION TAG SEQADV 2JZC HIS A 5 UNP P53178 EXPRESSION TAG SEQADV 2JZC HIS A 6 UNP P53178 EXPRESSION TAG SEQADV 2JZC HIS A 7 UNP P53178 EXPRESSION TAG SEQADV 2JZC HIS A 8 UNP P53178 EXPRESSION TAG SEQADV 2JZC HIS A 9 UNP P53178 EXPRESSION TAG SEQADV 2JZC HIS A 10 UNP P53178 EXPRESSION TAG SEQADV 2JZC SER A 11 UNP P53178 EXPRESSION TAG SEQADV 2JZC SER A 12 UNP P53178 EXPRESSION TAG SEQADV 2JZC GLY A 13 UNP P53178 EXPRESSION TAG SEQADV 2JZC LEU A 14 UNP P53178 EXPRESSION TAG SEQADV 2JZC VAL A 15 UNP P53178 EXPRESSION TAG SEQADV 2JZC PRO A 16 UNP P53178 EXPRESSION TAG SEQADV 2JZC ARG A 17 UNP P53178 EXPRESSION TAG SEQADV 2JZC GLY A 18 UNP P53178 EXPRESSION TAG SEQADV 2JZC SER A 19 UNP P53178 EXPRESSION TAG SEQADV 2JZC HIS A 20 UNP P53178 EXPRESSION TAG SEQADV 2JZC MET A 21 UNP P53178 EXPRESSION TAG SEQADV 2JZC LEU A 22 UNP P53178 EXPRESSION TAG SEQADV 2JZC GLU A 23 UNP P53178 EXPRESSION TAG SEQRES 1 A 224 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 224 LEU VAL PRO ARG GLY SER HIS MET LEU GLU GLY ILE ILE SEQRES 3 A 224 GLU GLU LYS ALA LEU PHE VAL THR CYS GLY ALA THR VAL SEQRES 4 A 224 PRO PHE PRO LYS LEU VAL SER CYS VAL LEU SER ASP GLU SEQRES 5 A 224 PHE CYS GLN GLU LEU ILE GLN TYR GLY PHE VAL ARG LEU SEQRES 6 A 224 ILE ILE GLN PHE GLY ARG ASN TYR SER SER GLU PHE GLU SEQRES 7 A 224 HIS LEU VAL GLN GLU ARG GLY GLY GLN ARG GLU SER GLN SEQRES 8 A 224 LYS ILE PRO ILE ASP GLN PHE GLY CYS GLY ASP THR ALA SEQRES 9 A 224 ARG GLN TYR VAL LEU MET ASN GLY LYS LEU LYS VAL ILE SEQRES 10 A 224 GLY PHE ASP PHE SER THR LYS MET GLN SER ILE ILE ARG SEQRES 11 A 224 ASP TYR SER ASP LEU VAL ILE SER HIS ALA GLY THR GLY SEQRES 12 A 224 SER ILE LEU ASP SER LEU ARG LEU ASN LYS PRO LEU ILE SEQRES 13 A 224 VAL CYS VAL ASN ASP SER LEU MET ASP ASN HIS GLN GLN SEQRES 14 A 224 GLN ILE ALA ASP LYS PHE VAL GLU LEU GLY TYR VAL TRP SEQRES 15 A 224 SER CYS ALA PRO THR GLU THR GLY LEU ILE ALA GLY LEU SEQRES 16 A 224 ARG ALA SER GLN THR GLU LYS LEU LYS PRO PHE PRO VAL SEQRES 17 A 224 SER HIS ASN PRO SER PHE GLU ARG LEU LEU VAL GLU THR SEQRES 18 A 224 ILE TYR SER HELIX 1 1 PHE A 41 LEU A 49 1 9 HELIX 2 2 SER A 50 GLN A 59 1 10 HELIX 3 3 HIS A 79 GLY A 85 1 7 HELIX 4 4 LYS A 124 SER A 133 1 10 HELIX 5 5 GLY A 141 LEU A 151 1 11 HELIX 6 6 ASN A 166 GLY A 179 1 14 HELIX 7 7 GLY A 190 GLN A 199 1 10 HELIX 8 8 SER A 213 ILE A 222 1 10 SHEET 1 A 6 GLN A 87 ARG A 88 0 SHEET 2 A 6 ARG A 105 VAL A 108 -1 O VAL A 108 N GLN A 87 SHEET 3 A 6 LYS A 115 GLY A 118 -1 O VAL A 116 N TYR A 107 SHEET 4 A 6 LEU A 65 ILE A 67 1 N ILE A 67 O ILE A 117 SHEET 5 A 6 LEU A 31 THR A 34 1 N VAL A 33 O ILE A 66 SHEET 6 A 6 VAL A 136 SER A 138 1 O ILE A 137 N PHE A 32 SHEET 1 B 2 VAL A 157 CYS A 158 0 SHEET 2 B 2 SER A 183 CYS A 184 1 O CYS A 184 N VAL A 157 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1