HEADER VIRAL PROTEIN 04-JAN-08 2JZF TITLE NMR CONFORMER CLOSEST TO THE MEAN COORDINATES OF THE DOMAIN 513-651 OF TITLE 2 THE SARS-COV NONSTRUCTURAL PROTEIN NSP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICASE POLYPROTEIN 1AB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NON-STRUCTURAL PROTEIN 3 (DOMAIN 513-651): RESIDUES 1331- COMPND 5 1469; COMPND 6 SYNONYM: PP1AB, ORF1AB POLYPROTEIN [INCLUDES: REPLICASE POLYPROTEIN COMPND 7 1A, NON-STRUCTURAL PROTEINS 1,2,3,4, 3C-LIKE PROTEINASE, NON- COMPND 8 STRUCTURAL PROTEINS 6,7,8,9,10, RNA-DIRECTED RNA POLYMERASE, COMPND 9 HELICASE, EXORIBONUCLEASE, URIDYLATE-SPECIFIC ENDORIBONUCLEASE, COMPND 10 PUTATIVE 2'-O-METHYL TRANSFERASE]; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SARS CORONAVIRUS; SOURCE 3 ORGANISM_TAXID: 227859; SOURCE 4 GENE: REP, 1A-1B; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS SARS-COV, SARS-UNIQUE DOMAIN, NONSTRUCTURAL PROTEIN, NSP3, NSP3C, KEYWDS 2 FUNCTIONAL AND STRUCTURAL PROTEOMICS OF SARS-COV- RELATED PROTEIN, KEYWDS 3 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 4 PROTEIN STRUCTURE INITIATIVE, PSI-2, VIRAL PROTEIN EXPDTA SOLUTION NMR AUTHOR A.CHATTERJEE,M.A.JOHNSON,P.SERRANO,B.PEDRINI,J.JOSEPH,K.SAIKATENDU, AUTHOR 2 B.NEUMAN,R.C.STEVENS,I.A.WILSON,M.J.BUCHMEIER,P.KUHN,K.WUTHRICH, AUTHOR 3 JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 2JZF 1 SEQADV REVDAT 5 16-MAR-22 2JZF 1 REMARK REVDAT 4 28-JUL-10 2JZF 1 TITLE KEYWDS REVDAT 3 10-MAR-09 2JZF 1 JRNL REVDAT 2 24-FEB-09 2JZF 1 VERSN REVDAT 1 05-FEB-08 2JZF 0 SPRSDE 05-FEB-08 2JZF 2JWJ JRNL AUTH A.CHATTERJEE,M.A.JOHNSON,P.SERRANO,B.PEDRINI,J.S.JOSEPH, JRNL AUTH 2 B.W.NEUMAN,K.SAIKATENDU,M.J.BUCHMEIER,P.KUHN,K.WUTHRICH JRNL TITL NUCLEAR MAGNETIC RESONANCE STRUCTURE SHOWS THAT THE SEVERE JRNL TITL 2 ACUTE RESPIRATORY SYNDROME CORONAVIRUS-UNIQUE DOMAIN JRNL TITL 3 CONTAINS A MACRODOMAIN FOLD. JRNL REF J.VIROL. V. 83 1823 2009 JRNL REFN ISSN 0022-538X JRNL PMID 19052085 JRNL DOI 10.1128/JVI.01781-08 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.2, OPAL REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100482. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.227 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-98% 15N] REMARK 210 NSP3(513-651), 25 MM SODIUM REMARK 210 PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 2 MM SODIUM AZIDE, 10 % REMARK 210 D2O, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC REGION; 3D 1H-13C REMARK 210 NOESY AROMATIC REGION REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 520 16.61 -144.87 REMARK 500 SER A 530 56.16 -119.57 REMARK 500 ASN A 532 -92.79 -138.90 REMARK 500 LEU A 533 -51.68 -135.00 REMARK 500 ILE A 569 142.55 51.17 REMARK 500 ASN A 600 29.66 48.49 REMARK 500 PRO A 607 43.94 -73.66 REMARK 500 ILE A 608 -88.37 34.02 REMARK 500 VAL A 611 -48.22 -133.20 REMARK 500 LYS A 628 33.60 -94.90 REMARK 500 SER A 636 10.70 -69.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 564 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 388820 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15469 RELATED DB: BMRB REMARK 900 NMR ASSIGNMENT OF THE DOMAIN 513-651 FROM THE SARS-COV REMARK 900 NONSTRUCTURAL PROTEIN NSP3 REMARK 900 RELATED ID: 15618 RELATED DB: BMRB REMARK 900 NMR ASSIGNMENT OF THE DOMAIN 527-651 FROM THE SARS-COV REMARK 900 NONSTRUCTURAL PROTEIN NSP3 REMARK 900 RELATED ID: 2RNK RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE DOMAIN 513-651 OF THE SARS-COV NONSTRUCTURAL REMARK 900 PROTEIN NSP3, ENSEMBLE OF TWENTY ENERGY MINIMIZED STRUCTURES REMARK 900 RELATED ID: 2JZD RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE DOMAIN 527-651 OF THE SARS-COV NONSTRUCTURAL REMARK 900 PROTEIN NSP3, ENSEMBLE OF TWENTY ENERGY MINIMIZED STRUCTURES REMARK 900 RELATED ID: 2JZE RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE DOMAIN 527-651 OF THE SARS-COV NONSTRUCTURAL REMARK 900 PROTEIN NSP3, SINGLE CONFORMER DBREF 2JZF A 513 651 UNP P59641 R1AB_CVHSA 1331 1469 SEQADV 2JZF GLY A -4 UNP P59641 EXPRESSION TAG SEQADV 2JZF SER A -3 UNP P59641 EXPRESSION TAG SEQADV 2JZF HIS A -2 UNP P59641 EXPRESSION TAG SEQADV 2JZF MET A -1 UNP P59641 EXPRESSION TAG SEQRES 1 A 143 GLY SER HIS MET VAL LEU PRO SER GLU ALA PRO ASN ALA SEQRES 2 A 143 LYS GLU GLU ILE LEU GLY THR VAL SER TRP ASN LEU ARG SEQRES 3 A 143 GLU MET LEU ALA HIS ALA GLU GLU THR ARG LYS LEU MET SEQRES 4 A 143 PRO ILE CYS MET ASP VAL ARG ALA ILE MET ALA THR ILE SEQRES 5 A 143 GLN ARG LYS TYR LYS GLY ILE LYS ILE GLN GLU GLY ILE SEQRES 6 A 143 VAL ASP TYR GLY VAL ARG PHE PHE PHE TYR THR SER LYS SEQRES 7 A 143 GLU PRO VAL ALA SER ILE ILE THR LYS LEU ASN SER LEU SEQRES 8 A 143 ASN GLU PRO LEU VAL THR MET PRO ILE GLY TYR VAL THR SEQRES 9 A 143 HIS GLY PHE ASN LEU GLU GLU ALA ALA ARG CYS MET ARG SEQRES 10 A 143 SER LEU LYS ALA PRO ALA VAL VAL SER VAL SER SER PRO SEQRES 11 A 143 ASP ALA VAL THR THR TYR ASN GLY TYR LEU THR SER SER HELIX 1 1 LEU A 533 ARG A 544 1 12 HELIX 2 2 VAL A 553 TYR A 564 1 12 HELIX 3 3 PRO A 588 ASN A 597 1 10 HELIX 4 4 ASN A 616 SER A 626 1 11 HELIX 5 5 SER A 637 SER A 651 1 15 SHEET 1 A 3 THR A 528 VAL A 529 0 SHEET 2 A 3 ALA A 631 SER A 634 1 O VAL A 633 N VAL A 529 SHEET 3 A 3 LEU A 603 THR A 605 1 N THR A 605 O VAL A 632 SHEET 1 B 3 LEU A 546 CYS A 550 0 SHEET 2 B 3 ARG A 579 TYR A 583 1 O PHE A 581 N ILE A 549 SHEET 3 B 3 GLY A 572 ASP A 575 -1 N VAL A 574 O PHE A 580 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000