HEADER TRANSFERASE 08-JAN-08 2JZH TITLE STRUCTURE OF IIB DOMAIN OF THE MANNOSE TRANSPORTER OF E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PTS SYSTEM MANNOSE-SPECIFIC EIIAB COMPONENT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PTS EIIB TYPE-4 DOMAIN; COMPND 5 SYNONYM: EIIAB-MAN, MANNOSE-SPECIFIC PHOSPHOTRANSFERASE ENZYME IIB COMPND 6 COMPONENT, PTS SYSTEM MANNOSE-SPECIFIC EIIB COMPONENT; COMPND 7 EC: 2.7.1.69; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MANX, GPTB, PTSL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET32A MODIFIED KEYWDS MANNOSE SPECIFIC PTS SYSTEM IIAB, IIB DOMAIN, IIBMAN KEYWDS 2 PHOSPHOTRANSFERASE ENZYME II, B COMPONENT, CYTOPLASM, MEMBRANE, KEYWDS 3 PHOSPHOPROTEIN, PHOSPHOTRANSFERASE SYSTEM, SUGAR TRANSPORT, KEYWDS 4 TRANSPORT, TRANSFERASE EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR M.KOMLOSH,D.C.WILLIAMS JR. REVDAT 4 16-MAR-22 2JZH 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JZH 1 VERSN REVDAT 2 06-MAY-08 2JZH 1 JRNL REVDAT 1 19-FEB-08 2JZH 0 JRNL AUTH J.HU,K.HU,D.C.WILLIAMS,M.E.KOMLOSH,M.CAI,G.M.CLORE JRNL TITL SOLUTION NMR STRUCTURES OF PRODUCTIVE AND NON-PRODUCTIVE JRNL TITL 2 COMPLEXES BETWEEN THE A AND B DOMAINS OF THE CYTOPLASMIC JRNL TITL 3 SUBUNIT OF THE MANNOSE TRANSPORTER OF THE ESCHERICHIA COLI JRNL TITL 4 PHOSPHOTRANSFERASE SYSTEM. JRNL REF J.BIOL.CHEM. V. 283 11024 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18270202 JRNL DOI 10.1074/JBC.M800312200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PIPP, X-PLOR NIH 2.18.1 REMARK 3 AUTHORS : GARRETT AND CLORE (PIPP), SCHWIETERS, KUSZEWSKI REMARK 3 AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 RMS DEVIATION FROM EXPERIMENTAL RESTRAINTS (NUNMER OF RESTRAINTS REMARK 3 IN PARENTHESES): REMARK 3 INTERPROTON DISTANCES (A) (1577) 0.008, REMARK 3 TORSION ANGLES (DEG) (478) 0.26, REMARK 3 13CALPHA SHIFTS (PPM) (161) 1.25, REMARK 3 13CBETA SHIFTS (PPM) (158) 1.23. REMARK 3 RDC R-FACTORS (%): REMARK 3 PHAGE 1DNH (151) 4.2, REMARK 3 PHAGE 1DNC' (113) 18.2, REMARK 3 PHAGE 2DHNC' (113) 16.5, REMARK 3 PEG/HEXANOL 1DNH (141) 6.0, REMARK 3 PEG/HEXANOL 1DNC' (96) 25.8, REMARK 3 PEG/HEXANOL 2DHNC' (103) 23.5. REMARK 4 REMARK 4 2JZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100484. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, SODIUM PHOSPHATE, REMARK 210 SODIUM AZIDE, 100% D2O; 0.5-1 MM REMARK 210 [U-100% 15N] PROTEIN, SODIUM REMARK 210 PHOSPHATE, SODIUM AZIDE, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HCCH-TOCSY; 3D HCCH-COSY; 3D REMARK 210 1H-13C NOESY; 2D 1H-15N HSQC; 3D REMARK 210 1H-15N NOESY; 3D CBCA(CO)NH; 3D REMARK 210 C(CO)NH; 3D HNCACB; 3D HBHA(CO) REMARK 210 NH; 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP, CAPP, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING IN TORSION REMARK 210 ANGLE SPACE REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 130 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: DOUBLE AND TRIPLE RESONANCE 3D NMR EXPERIMENTS FOR REMARK 210 ASSIGNMENTS (HNCACB, CBCA(CO)NH, HBHA(CBCACO)NH, C(CCO)NH, H(CCO) REMARK 210 NH, HCCH-COSY, HCCH-TOCSY). NOE-DERIVED INTERPROTON DISTANCE REMARK 210 RESTRANTS FROM 3D 15N-, 13C-, 13C/15M-, 13C/13C, AND 15N/15N- REMARK 210 SEPARATED NOE SPECTRA. SIDE CHAIN ROTAMERS FROM 3H HETERONUCLEAR REMARK 210 COUPLINGS AND SHORT MIXING TIME 3D 13C-SEPARATED NOE AND 3D 15N- REMARK 210 SEAPARATED ROE SPECTRA. RDCS OBTAINED BY TAKING DIFFERENCE IN J REMARK 210 COUPLINGS IN ALIGNED (PHAGE PF1 AND PEG/HEXANOL) AND ISOTOPIC REMARK 210 MEDIA. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 MET A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 MET A 6 REMARK 465 GLY A 7 REMARK 465 PRO A 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 RES CSSEQI ATOMS REMARK 470 LYS A 173 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN A 9 HZ2 LYS A 109 1.31 REMARK 500 OD1 ASP A 134 H ASP A 137 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 10 36.01 -81.46 REMARK 500 TYR A 11 -134.77 -118.22 REMARK 500 LEU A 16 147.53 -171.94 REMARK 500 ASP A 20 115.33 -163.74 REMARK 500 LEU A 23 -101.35 59.02 REMARK 500 ALA A 130 24.38 -145.50 REMARK 500 ILE A 171 -66.10 -109.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PDO RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF IIAMANNOSE REMARK 900 RELATED ID: 2JZN RELATED DB: PDB REMARK 900 STRUCTURE OF PRODCUTIVE IIAMANNOSE(H10E)-IIBMANNOSE COMPLEX REMARK 900 RELATED ID: 2JZO RELATED DB: PDB REMARK 900 STRUCTURE OF NON-PRODCUTIVE IIAMANNOSE(H10E)-IIBMANNOSE COMPLEX REMARK 900 RELATED ID: 1VSQ RELATED DB: PDB REMARK 900 STRUCTURE OF PRODCUTIVE IIAMANNOSE(H10E)-IIBMANNOSE COMPLEX DBREF 2JZH A 4 173 UNP P69797 PTNAB_ECOLI 154 323 SEQADV 2JZH GLY A 1 UNP P69797 EXPRESSION TAG SEQADV 2JZH SER A 2 UNP P69797 EXPRESSION TAG SEQADV 2JZH MET A 3 UNP P69797 EXPRESSION TAG SEQRES 1 A 173 GLY SER MET LYS PRO MET GLY PRO ASN ASP TYR MET VAL SEQRES 2 A 173 ILE GLY LEU ALA ARG ILE ASP ASP ARG LEU ILE HIS GLY SEQRES 3 A 173 GLN VAL ALA THR ARG TRP THR LYS GLU THR ASN VAL SER SEQRES 4 A 173 ARG ILE ILE VAL VAL SER ASP GLU VAL ALA ALA ASP THR SEQRES 5 A 173 VAL ARG LYS THR LEU LEU THR GLN VAL ALA PRO PRO GLY SEQRES 6 A 173 VAL THR ALA HIS VAL VAL ASP VAL ALA LYS MET ILE ARG SEQRES 7 A 173 VAL TYR ASN ASN PRO LYS TYR ALA GLY GLU ARG VAL MET SEQRES 8 A 173 LEU LEU PHE THR ASN PRO THR ASP VAL GLU ARG LEU VAL SEQRES 9 A 173 GLU GLY GLY VAL LYS ILE THR SER VAL ASN VAL GLY GLY SEQRES 10 A 173 MET ALA PHE ARG GLN GLY LYS THR GLN VAL ASN ASN ALA SEQRES 11 A 173 VAL SER VAL ASP GLU LYS ASP ILE GLU ALA PHE LYS LYS SEQRES 12 A 173 LEU ASN ALA ARG GLY ILE GLU LEU GLU VAL ARG LYS VAL SEQRES 13 A 173 SER THR ASP PRO LYS LEU LYS MET MET ASP LEU ILE SER SEQRES 14 A 173 LYS ILE ASP LYS HELIX 1 1 GLN A 27 THR A 36 1 10 HELIX 2 2 SER A 45 ALA A 50 1 6 HELIX 3 3 ASP A 51 VAL A 61 1 11 HELIX 4 4 ASP A 72 ASN A 81 1 10 HELIX 5 5 ASN A 82 ALA A 86 5 5 HELIX 6 6 ASN A 96 GLY A 106 1 11 HELIX 7 7 ASP A 134 ARG A 147 1 14 HELIX 8 8 MET A 164 LYS A 170 1 7 SHEET 1 A 7 THR A 67 VAL A 71 0 SHEET 2 A 7 ARG A 40 VAL A 44 1 N VAL A 43 O HIS A 69 SHEET 3 A 7 ARG A 89 PHE A 94 1 O MET A 91 N ILE A 42 SHEET 4 A 7 VAL A 13 ASP A 20 1 N ASP A 20 O PHE A 94 SHEET 5 A 7 SER A 112 GLY A 117 1 O ASN A 114 N ALA A 17 SHEET 6 A 7 GLU A 150 VAL A 153 1 O GLU A 150 N VAL A 113 SHEET 7 A 7 LEU A 162 LYS A 163 -1 O LEU A 162 N VAL A 153 SHEET 1 B 2 THR A 125 GLN A 126 0 SHEET 2 B 2 SER A 132 VAL A 133 -1 O VAL A 133 N THR A 125 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000