HEADER CARBOHYDRATE BINDING PROTEIN 09-JAN-08 2JZJ TITLE STRUCTURE OF CRCVNH (C. RICHARDII CVNH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYANOVIRIN-N HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYANOVIRIN-N-LIKE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CERATOPTERIS RICHARDII; SOURCE 3 ORGANISM_TAXID: 49495; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS CVNH, ANTIVIRAL PROTEIN, CARBOHYDRATE BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR L.M.I.KOHARUDIN,A.R.VISCOMI,J.JEE,S.OTTONELLO,A.M.GRONENBORN REVDAT 4 16-MAR-22 2JZJ 1 REMARK REVDAT 3 24-FEB-09 2JZJ 1 VERSN REVDAT 2 21-OCT-08 2JZJ 1 JRNL REVDAT 1 25-MAR-08 2JZJ 0 JRNL AUTH L.M.KOHARUDIN,A.R.VISCOMI,J.G.JEE,S.OTTONELLO,A.M.GRONENBORN JRNL TITL THE EVOLUTIONARILY CONSERVED FAMILY OF CYANOVIRIN-N JRNL TITL 2 HOMOLOGS: STRUCTURES AND CARBOHYDRATE SPECIFICITY. JRNL REF STRUCTURE V. 16 570 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18400178 JRNL DOI 10.1016/J.STR.2008.01.015 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SA USING CNS FOLLOWED BY EXPLICIT WATER REMARK 3 REFINEMENT IMPLEMENETD IN ARIA REMARK 4 REMARK 4 2JZJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100486. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 15N] CRCVNH, 20 REMARK 210 MM SODIUM PHOSPHATE, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 CRCVNH, 20 MM SODIUM PHOSPHATE, REMARK 210 0.02 % SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 3D REMARK 210 H(CCO)NH; 15N-NOESY HSQC; 13C- REMARK 210 NOESY HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, CYANA, CNS, REMARK 210 TALOS, ARIA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 800 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 LEU A 117 REMARK 465 GLU A 118 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 PRO A 51 N PRO A 51 CA -0.126 REMARK 500 2 PRO A 51 N PRO A 51 CA -0.126 REMARK 500 3 PRO A 51 N PRO A 51 CA -0.128 REMARK 500 4 PRO A 51 N PRO A 51 CA -0.120 REMARK 500 6 PRO A 51 N PRO A 51 CA -0.126 REMARK 500 7 PRO A 51 N PRO A 51 CA -0.123 REMARK 500 8 PRO A 51 N PRO A 51 CA -0.124 REMARK 500 9 PRO A 51 N PRO A 51 CA -0.124 REMARK 500 12 PRO A 51 N PRO A 51 CA -0.125 REMARK 500 13 PRO A 51 N PRO A 51 CA -0.124 REMARK 500 14 PRO A 51 N PRO A 51 CA -0.126 REMARK 500 15 PRO A 51 N PRO A 51 CA -0.126 REMARK 500 16 PRO A 51 N PRO A 51 CA -0.127 REMARK 500 17 PRO A 51 N PRO A 51 CA -0.127 REMARK 500 18 PRO A 51 N PRO A 51 CA -0.124 REMARK 500 19 PRO A 51 N PRO A 51 CA -0.123 REMARK 500 20 PRO A 51 N PRO A 51 CA -0.125 REMARK 500 22 PRO A 51 N PRO A 51 CA -0.124 REMARK 500 23 PRO A 51 N PRO A 51 CA -0.125 REMARK 500 24 PRO A 51 N PRO A 51 CA -0.127 REMARK 500 25 PRO A 51 N PRO A 51 CA -0.124 REMARK 500 26 PRO A 51 N PRO A 51 CA -0.125 REMARK 500 27 PRO A 51 N PRO A 51 CA -0.123 REMARK 500 28 PRO A 51 N PRO A 51 CA -0.128 REMARK 500 29 PRO A 51 N PRO A 51 CA -0.123 REMARK 500 30 PRO A 51 N PRO A 51 CA -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 2 -159.23 58.12 REMARK 500 1 CYS A 3 -64.09 -108.53 REMARK 500 1 ASN A 4 71.17 52.78 REMARK 500 1 TYR A 17 26.01 -170.81 REMARK 500 1 ASN A 25 -169.09 -102.41 REMARK 500 1 TYR A 50 -74.06 -46.38 REMARK 500 1 HIS A 68 -27.82 -153.46 REMARK 500 1 ASP A 78 55.68 -174.39 REMARK 500 1 ALA A 104 56.04 -109.67 REMARK 500 1 SER A 105 -117.72 -177.38 REMARK 500 1 ASP A 108 -102.51 37.35 REMARK 500 1 HIS A 109 -67.49 -160.54 REMARK 500 1 VAL A 110 75.79 -104.12 REMARK 500 2 GLN A 2 137.17 71.76 REMARK 500 2 CYS A 3 -74.92 -86.33 REMARK 500 2 ASN A 4 73.06 41.49 REMARK 500 2 TYR A 50 -71.28 -35.25 REMARK 500 2 SER A 58 20.53 -146.26 REMARK 500 2 HIS A 68 -18.09 -149.22 REMARK 500 2 ASP A 78 57.79 -176.61 REMARK 500 2 ALA A 104 42.15 -102.42 REMARK 500 2 SER A 105 -121.12 -166.32 REMARK 500 2 VAL A 110 52.33 -104.82 REMARK 500 3 GLN A 2 -172.19 62.99 REMARK 500 3 CYS A 3 -66.59 -127.64 REMARK 500 3 TYR A 17 28.94 -170.45 REMARK 500 3 SER A 58 28.74 -146.55 REMARK 500 3 ASP A 78 48.97 -169.29 REMARK 500 3 ALA A 104 50.20 -101.47 REMARK 500 3 SER A 105 -151.64 -165.29 REMARK 500 3 ALA A 107 -49.51 -173.41 REMARK 500 3 HIS A 109 162.35 69.03 REMARK 500 3 LYS A 112 33.71 -144.08 REMARK 500 4 CYS A 3 -63.25 -123.66 REMARK 500 4 ASN A 4 78.99 33.04 REMARK 500 4 SER A 8 27.01 -145.15 REMARK 500 4 TYR A 17 16.67 -158.23 REMARK 500 4 SER A 58 14.32 -144.83 REMARK 500 4 HIS A 68 -29.11 -150.76 REMARK 500 4 ASP A 78 52.41 -172.13 REMARK 500 4 ALA A 104 50.88 -101.85 REMARK 500 4 SER A 105 -142.41 -160.64 REMARK 500 4 ASN A 106 79.09 59.05 REMARK 500 5 GLN A 2 114.70 66.83 REMARK 500 5 ASN A 4 70.20 43.04 REMARK 500 5 TYR A 17 20.83 -167.82 REMARK 500 5 ASN A 25 -168.10 -112.49 REMARK 500 5 SER A 58 19.12 -143.48 REMARK 500 5 HIS A 68 -25.67 -148.00 REMARK 500 5 ASP A 78 53.23 -169.84 REMARK 500 REMARK 500 THIS ENTRY HAS 315 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JZK RELATED DB: PDB REMARK 900 RELATED ID: 2JZL RELATED DB: PDB DBREF 2JZJ A 1 124 PDB 2JZJ 2JZJ 1 124 SEQRES 1 A 124 MET GLN CYS ASN PHE ALA ASN SER CYS THR GLY VAL GLU SEQRES 2 A 124 LEU TYR GLY TYR ILE LEU ARG GLY ASP CYS ILE ASN GLU SEQRES 3 A 124 ASP GLY HIS PRO HIS ALA THR SER ILE ASN LEU ASN TYR SEQRES 4 A 124 TYR ILE GLY ASN ASP ASN GLY ARG LEU GLU TYR PRO GLY SEQRES 5 A 124 GLU SER PHE GLY SER SER CYS VAL LYS THR ALA LEU ASN SEQRES 6 A 124 ASP GLY HIS THR LEU THR ALA SER CYS LYS GLY ALA ASP SEQRES 7 A 124 GLY GLN TYR HIS ASP SER SER MET ASP LEU ASN TYR VAL SEQRES 8 A 124 VAL GLY ASN SER TYR GLY TYR MET GLU PRO CYS ARG ALA SEQRES 9 A 124 SER ASN ALA ASP HIS VAL LEU LYS SER SER SER GLU LEU SEQRES 10 A 124 GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASN A 4 ASN A 7 5 4 HELIX 2 2 ASN A 38 TYR A 40 5 3 HELIX 3 3 ASN A 89 VAL A 91 5 3 SHEET 1 A 3 CYS A 9 TYR A 15 0 SHEET 2 A 3 ILE A 18 ILE A 24 -1 O ASP A 22 N THR A 10 SHEET 3 A 3 PRO A 30 ASN A 36 -1 O ILE A 35 N LEU A 19 SHEET 1 B 2 GLY A 42 ASP A 44 0 SHEET 2 B 2 ARG A 47 GLU A 49 -1 O GLU A 49 N GLY A 42 SHEET 1 C 3 CYS A 59 ASN A 65 0 SHEET 2 C 3 THR A 69 LYS A 75 -1 O THR A 69 N ASN A 65 SHEET 3 C 3 TYR A 81 ASP A 87 -1 O MET A 86 N LEU A 70 SHEET 1 D 2 GLY A 93 SER A 95 0 SHEET 2 D 2 TYR A 98 GLU A 100 -1 O TYR A 98 N SER A 95 SSBOND 1 CYS A 3 CYS A 102 1555 1555 2.03 SSBOND 2 CYS A 9 CYS A 23 1555 1555 2.03 SSBOND 3 CYS A 59 CYS A 74 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1