HEADER CARBOHYDRATE BINDING PROTEIN 09-JAN-08 2JZL TITLE STRUCTURE OF NCCVNH (N. CRASSA CVNH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYANOVIRIN-N HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYANOVIRIN-N-LIKE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA; SOURCE 3 ORGANISM_TAXID: 5141; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CVNH, ANTIVIRAL PROTEIN, CARBOHYDRATE BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR L.M.I.KOHARUDIN,A.R.VISCOMI,J.JEE,S.OTTONELLO,A.M.GRONENBORN REVDAT 4 16-MAR-22 2JZL 1 TITLE REMARK REVDAT 3 24-FEB-09 2JZL 1 VERSN REVDAT 2 21-OCT-08 2JZL 1 JRNL REVDAT 1 25-MAR-08 2JZL 0 JRNL AUTH L.M.KOHARUDIN,A.R.VISCOMI,J.G.JEE,S.OTTONELLO,A.M.GRONENBORN JRNL TITL THE EVOLUTIONARILY CONSERVED FAMILY OF CYANOVIRIN-N JRNL TITL 2 HOMOLOGS: STRUCTURES AND CARBOHYDRATE SPECIFICITY. JRNL REF STRUCTURE V. 16 570 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18400178 JRNL DOI 10.1016/J.STR.2008.01.015 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SA USING CNS FOLLOWED BY EXPLICIT WATER REMARK 3 REFINEMENT IMPLEMENETD IN ARIA REMARK 4 REMARK 4 2JZL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100488. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 15N] NCCVNH, 20 REMARK 210 MM SODIUM PHOSPHATE, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 NCCVNH, 20 MM SODIUM PHOSPHATE, REMARK 210 0.02 % SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 3D REMARK 210 H(CCO)NH; 15N-NOESY HSQC; 13C- REMARK 210 NOESY HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, CYANA, CNS, REMARK 210 TALOS, ARIA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 800 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 8 HH21 ARG A 24 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 4 64.46 -163.08 REMARK 500 1 VAL A 5 -78.15 70.85 REMARK 500 1 ASN A 56 49.17 -82.37 REMARK 500 1 ILE A 64 89.46 -68.04 REMARK 500 2 ASN A 56 48.95 -85.16 REMARK 500 2 VAL A 103 65.44 -110.75 REMARK 500 3 PHE A 3 -40.22 -178.35 REMARK 500 3 ASN A 56 48.75 -82.02 REMARK 500 3 ILE A 64 93.24 -66.35 REMARK 500 4 SER A 2 80.28 60.85 REMARK 500 4 PHE A 3 -43.86 -162.67 REMARK 500 4 ASN A 56 49.65 -84.67 REMARK 500 4 ILE A 64 90.15 -66.41 REMARK 500 5 HIS A 4 -80.99 -88.92 REMARK 500 5 ASP A 47 28.92 49.51 REMARK 500 5 ASN A 56 48.37 -85.75 REMARK 500 5 ILE A 64 87.73 -67.93 REMARK 500 5 VAL A 103 68.74 -110.03 REMARK 500 6 SER A 2 -61.21 71.18 REMARK 500 6 THR A 6 -50.30 -163.13 REMARK 500 6 ASN A 56 48.96 -83.32 REMARK 500 7 VAL A 5 75.23 54.24 REMARK 500 7 ASN A 56 48.93 -82.68 REMARK 500 7 ILE A 64 90.77 -67.65 REMARK 500 8 PHE A 3 70.16 58.14 REMARK 500 8 THR A 6 -70.47 -127.89 REMARK 500 8 ASN A 56 49.15 -84.55 REMARK 500 8 ILE A 64 89.63 -69.18 REMARK 500 8 VAL A 103 69.90 -116.72 REMARK 500 9 ASN A 56 47.20 -85.01 REMARK 500 10 VAL A 5 102.65 -59.34 REMARK 500 10 ASN A 56 48.95 -84.29 REMARK 500 10 ILE A 64 89.95 -66.95 REMARK 500 11 THR A 6 -131.24 -111.47 REMARK 500 11 ASN A 56 47.94 -87.09 REMARK 500 11 ILE A 64 91.44 -66.54 REMARK 500 12 THR A 6 -75.86 -113.34 REMARK 500 12 ASN A 56 49.09 -83.96 REMARK 500 12 ILE A 64 91.58 -66.46 REMARK 500 13 HIS A 4 -69.30 -144.63 REMARK 500 13 ASN A 56 49.37 -84.65 REMARK 500 13 ILE A 64 88.96 -66.96 REMARK 500 14 ASN A 56 49.39 -82.82 REMARK 500 14 ILE A 64 91.91 -68.48 REMARK 500 15 SER A 2 -174.72 62.85 REMARK 500 15 HIS A 4 -31.00 -178.52 REMARK 500 15 ASN A 56 48.75 -83.95 REMARK 500 15 ILE A 64 89.68 -69.94 REMARK 500 16 SER A 2 -63.34 -131.95 REMARK 500 16 PHE A 3 -57.00 69.95 REMARK 500 REMARK 500 THIS ENTRY HAS 104 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JZJ RELATED DB: PDB REMARK 900 RELATED ID: 2JZK RELATED DB: PDB DBREF 2JZL A 1 111 UNP Q7S6U4 Q7S6U4_NEUCR 1 111 SEQADV 2JZL GLY A -2 UNP Q7S6U4 EXPRESSION TAG SEQADV 2JZL SER A -1 UNP Q7S6U4 EXPRESSION TAG SEQADV 2JZL HIS A 0 UNP Q7S6U4 EXPRESSION TAG SEQRES 1 A 114 GLY SER HIS MET SER PHE HIS VAL THR ALA GLU ASP ALA SEQRES 2 A 114 ARG ILE GLU VAL ARG ASP ASN ARG THR ILE LEU PHE ALA SEQRES 3 A 114 ARG LEU ARG ARG GLU ASP GLY GLU TRP ASN ASP ALA SER SEQRES 4 A 114 TYR GLU LEU ASP GLN ILE ILE GLY ASN ASN ASP GLY HIS SEQRES 5 A 114 PHE GLN TRP GLY GLY GLN ASN PHE THR GLU THR ALA GLU SEQRES 6 A 114 ASP ILE ARG PHE HIS PRO LYS GLU GLY ALA ALA GLU GLN SEQRES 7 A 114 PRO ILE LEU ARG ALA ARG LEU ARG ASP CYS ASN GLY GLU SEQRES 8 A 114 PHE HIS ASP ARG ASP VAL ASN LEU THR GLU ILE VAL GLU SEQRES 9 A 114 ASN VAL ASN GLY GLU PHE GLN ALA LYS PHE HELIX 1 1 ASP A 40 ILE A 42 5 3 HELIX 2 2 ASN A 56 GLU A 59 5 4 SHEET 1 A 3 ARG A 11 ARG A 15 0 SHEET 2 A 3 ARG A 18 ARG A 26 -1 O ARG A 18 N ARG A 15 SHEET 3 A 3 TRP A 32 GLU A 38 -1 O ASN A 33 N LEU A 25 SHEET 1 B 2 ASN A 45 ASN A 46 0 SHEET 2 B 2 HIS A 49 PHE A 50 -1 O HIS A 49 N ASN A 46 SHEET 1 C 3 ALA A 61 HIS A 67 0 SHEET 2 C 3 ILE A 77 ARG A 83 -1 O ARG A 81 N GLU A 62 SHEET 3 C 3 PHE A 89 VAL A 94 -1 O VAL A 94 N LEU A 78 SHEET 1 D 2 VAL A 100 ASN A 102 0 SHEET 2 D 2 PHE A 107 ALA A 109 -1 O GLN A 108 N GLU A 101 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1