HEADER ISOMERASE 21-JAN-08 2JZV TITLE SOLUTION STRUCTURE OF S. AUREUS PRSA-PPIASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOLDASE PROTEIN PRSA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 140-245; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: ATCC 292B; SOURCE 5 GENE: PRSA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX-2T KEYWDS PPIASE, PARVULIN, FOLDASE, STAPHYLOCOCCUS AUREUS, PROLINE ISOMERASE, KEYWDS 2 LIPOPROTEIN, MEMBRANE, PALMITATE, ROTAMASE, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR R.SEPPALA,H.TOSSAVAINEN,S.HEIKKINEN,H.KOSKELA,V.KONTINEN,P.PERMI REVDAT 3 16-MAR-22 2JZV 1 REMARK SEQADV REVDAT 2 31-MAR-09 2JZV 1 JRNL REVDAT 1 20-JAN-09 2JZV 0 JRNL AUTH O.HEIKKINEN,R.SEPPALA,H.TOSSAVAINEN,S.HEIKKINEN,H.KOSKELA, JRNL AUTH 2 P.PERMI,I.KILPELAINEN JRNL TITL SOLUTION STRUCTURE OF THE PARVULIN-TYPE PPIASE DOMAIN OF JRNL TITL 2 STAPHYLOCOCCUS AUREUS PRSA - IMPLICATIONS FOR THE CATALYTIC JRNL TITL 3 MECHANISM OF PARVULINS. JRNL REF BMC STRUCT.BIOL. V. 9 17 2009 JRNL REFN ESSN 1472-6807 JRNL PMID 19309529 JRNL DOI 10.1186/1472-6807-9-17 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, AMBER 8.0 REMARK 3 AUTHORS : VARIAN (VNMR), CASE, DARDEN, CHEATHAM, III, REMARK 3 SIMMERLING, WANG, DUKE, LUO, ... AND KOLLM (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE REFINED WITH MOLECULAR REMARK 3 DYNAMICS USING BORN IMPLICIT SOLVENT MODEL IN AMBER 8.0 REMARK 4 REMARK 4 2JZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100498. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-15N] PRSA-PPIASE, 20 REMARK 210 MM BIS-TRIS, 1 MM SODIUM AZIDE, REMARK 210 1 MM EDTA, 92% H2O/8% D2O; 1 MM REMARK 210 [U-15N] PRSA-PPIASE, 20 MM BIS- REMARK 210 TRIS, 1 MM SODIUM AZIDE, 1 MM REMARK 210 EDTA, 92% H2O/8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCACB; 3D HN(CO)CA; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D IHNCA; 3D 1H-13C NOESY REMARK 210 (AROM); (H )C (C C )H; (H )C (C REMARK 210 C C )H; J(CN) INTENSITY REMARK 210 MODULATED CONSTANT TIME 13C-HSQC; REMARK 210 3D R1 RESOLVED 1H-15N-HSQC; 3D REMARK 210 R2 RESOLVED 1H-15N-HSQC; REMARK 210 EXCHANGE RATE RESOLVED 1H-15N- REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, SPARKY 3.110, TALOS REMARK 210 2003.027.13.05, CYANA 2.1, REMARK 210 PROCHECKNMR, WHAT_CHECK REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 229 -107.21 -80.40 REMARK 500 1 GLU A 230 -177.26 -173.28 REMARK 500 2 GLU A 159 133.00 -170.82 REMARK 500 2 ASP A 201 31.98 74.00 REMARK 500 2 ASP A 244 -163.89 -100.02 REMARK 500 3 LYS A 158 -23.03 69.66 REMARK 500 6 ASP A 140 30.36 -143.47 REMARK 500 6 ASP A 180 89.75 -151.59 REMARK 500 7 ASP A 201 25.18 83.83 REMARK 500 9 ASP A 140 46.23 -76.40 REMARK 500 11 SER A -1 -106.24 -96.95 REMARK 500 11 ASP A 201 31.45 76.49 REMARK 500 15 ASP A 201 33.69 81.83 REMARK 500 16 ASP A 244 -167.58 -111.69 REMARK 500 17 LYS A 154 3.86 56.07 REMARK 500 17 ASP A 201 29.08 81.59 REMARK 500 18 ASP A 180 86.50 -151.47 REMARK 500 20 GLU A 159 -95.35 -80.56 REMARK 500 21 ASP A 180 86.74 -157.11 REMARK 500 22 ASP A 180 84.24 -152.46 REMARK 500 23 ASP A 201 20.11 81.41 REMARK 500 25 ASP A 201 31.75 82.74 REMARK 500 REMARK 500 REMARK: NULL DBREF 2JZV A 140 245 UNP P60747 PRSA_STAAM 140 245 SEQADV 2JZV GLY A -5 UNP P60747 EXPRESSION TAG SEQADV 2JZV PRO A -4 UNP P60747 EXPRESSION TAG SEQADV 2JZV LEU A -3 UNP P60747 EXPRESSION TAG SEQADV 2JZV GLY A -2 UNP P60747 EXPRESSION TAG SEQADV 2JZV SER A -1 UNP P60747 EXPRESSION TAG SEQRES 1 A 111 GLY PRO LEU GLY SER ASP SER LYS LYS ALA SER HIS ILE SEQRES 2 A 111 LEU ILE LYS VAL LYS SER LYS LYS SER ASP LYS GLU GLY SEQRES 3 A 111 LEU ASP ASP LYS GLU ALA LYS GLN LYS ALA GLU GLU ILE SEQRES 4 A 111 GLN LYS GLU VAL SER LYS ASP PRO SER LYS PHE GLY GLU SEQRES 5 A 111 ILE ALA LYS LYS GLU SER MET ASP THR GLY SER ALA LYS SEQRES 6 A 111 LYS ASP GLY GLU LEU GLY TYR VAL LEU LYS GLY GLN THR SEQRES 7 A 111 ASP LYS ASP PHE GLU LYS ALA LEU PHE LYS LEU LYS ASP SEQRES 8 A 111 GLY GLU VAL SER GLU VAL VAL LYS SER SER PHE GLY TYR SEQRES 9 A 111 HIS ILE ILE LYS ALA ASP LYS HELIX 1 1 ASP A 162 LYS A 179 1 18 HELIX 2 2 LYS A 183 SER A 192 1 10 HELIX 3 3 ASP A 194 LYS A 199 1 6 HELIX 4 4 ASP A 213 LYS A 222 1 10 SHEET 1 A 4 GLU A 203 LEU A 208 0 SHEET 2 A 4 SER A 141 LYS A 150 -1 N LYS A 142 O VAL A 207 SHEET 3 A 4 GLY A 237 ALA A 243 -1 O TYR A 238 N ILE A 149 SHEET 4 A 4 VAL A 232 SER A 234 -1 N VAL A 232 O HIS A 239 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1