HEADER STRUCTURAL PROTEIN 23-JAN-08 2K00 TITLE SOLUTION STRUCTURE OF THE TALIN F3 IN COMPLEX WITH LAYILIN CYTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TALIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 309-400; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LAYILIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 367-381; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 GENE: TLN1, TLN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-6P2; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: THE PEPTIDE IS THE C-TERMINAL LAYILIN FRAGMENT SOURCE 12 NATURALLY FOUND IN MUS MUSCULUS. KEYWDS STRUCTURAL PROTEIN, CELL PROJECTION, CYTOPLASM, CYTOSKELETON, KEYWDS 2 GLYCOPROTEIN, MEMBRANE, PHOSPHOPROTEIN, ALTERNATIVE SPLICING, KEYWDS 3 LECTIN, TRANSMEMBRANE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.L.WEGENER,I.L.BARSUKOV REVDAT 3 16-MAR-22 2K00 1 REMARK REVDAT 2 24-FEB-09 2K00 1 VERSN REVDAT 1 09-SEP-08 2K00 0 JRNL AUTH K.L.WEGENER,J.BASRAN,C.R.BAGSHAW,I.D.CAMPBELL,G.C.ROBERTS, JRNL AUTH 2 D.R.CRITCHLEY,I.L.BARSUKOV JRNL TITL STRUCTURAL BASIS FOR THE INTERACTION BETWEEN THE CYTOPLASMIC JRNL TITL 2 DOMAIN OF THE HYALURONATE RECEPTOR LAYILIN AND THE TALIN F3 JRNL TITL 3 SUBDOMAIN JRNL REF J.MOL.BIOL. V. 382 112 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18638481 JRNL DOI 10.1016/J.JMB.2008.06.087 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE OF THE COMPLEX CALCULATED REMARK 3 USING 127 INTERMOLECULAR NOE AND 155 NOES WITHIN THE PEPTIDE. REMARK 3 FINAL STRUCTURES REFINED IN WATER. REMARK 4 REMARK 4 2K00 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000100503. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] PROTEIN, 3.5 REMARK 210 MM PEPTIDE, 100 MM SODIUM REMARK 210 CHLORIDE, 50 MM SODIUM PHOSPHATE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C FILTERED NOESY; 3D 1H REMARK 210 -15N FILTERED NOESY; 2D 1H-1H REMARK 210 FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2, TOPSPIN 2.0, ANALYSIS REMARK 210 1.0 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING ISOTOPE-FILTERED REMARK 210 EXPERIMENTS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 7 TYR B 381 CE1 TYR B 381 CZ 0.137 REMARK 500 7 TYR B 381 CZ TYR B 381 CE2 -0.140 REMARK 500 17 TYR B 381 CE1 TYR B 381 CZ 0.106 REMARK 500 17 TYR B 381 CZ TYR B 381 CE2 -0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 335 -26.28 -144.12 REMARK 500 1 TYR A 377 -168.56 -121.17 REMARK 500 1 THR A 382 145.59 -176.85 REMARK 500 1 LYS B 370 42.82 -140.37 REMARK 500 2 MET A 319 -159.62 -112.19 REMARK 500 2 GLU A 335 -31.25 -140.74 REMARK 500 2 LYS A 357 -69.70 -99.38 REMARK 500 2 TYR A 373 -47.27 -138.66 REMARK 500 2 ARG B 368 -76.72 -85.76 REMARK 500 2 SER B 369 33.75 -174.06 REMARK 500 2 GLU B 371 -88.82 -112.05 REMARK 500 3 VAL A 310 -69.04 72.33 REMARK 500 3 ARG B 368 -157.17 -124.95 REMARK 500 3 LYS B 370 78.10 -170.43 REMARK 500 4 GLU A 335 -30.48 -156.04 REMARK 500 4 THR A 382 146.30 -174.51 REMARK 500 4 LYS B 370 87.36 61.17 REMARK 500 5 ARG B 368 86.73 55.65 REMARK 500 6 GLU A 335 -26.62 -145.40 REMARK 500 6 LYS A 357 -61.29 -97.86 REMARK 500 6 LYS A 364 -35.38 -131.99 REMARK 500 6 ARG B 368 -62.71 70.78 REMARK 500 7 THR A 382 145.12 -170.86 REMARK 500 9 VAL A 310 70.10 34.33 REMARK 500 9 ARG B 368 73.16 56.12 REMARK 500 10 GLU A 335 -31.62 -158.05 REMARK 500 10 ILE A 348 -61.11 -90.16 REMARK 500 10 PRO A 363 34.63 -74.99 REMARK 500 10 LYS A 364 -36.05 -154.50 REMARK 500 10 THR A 382 133.45 179.25 REMARK 500 10 LYS B 370 41.17 -158.01 REMARK 500 10 SER B 372 152.64 71.19 REMARK 500 11 ARG B 368 -26.52 -145.50 REMARK 500 11 LYS B 370 85.52 36.14 REMARK 500 11 GLU B 371 98.68 -68.88 REMARK 500 12 VAL A 310 84.55 68.95 REMARK 500 12 GLU A 335 -30.87 -140.43 REMARK 500 12 ARG B 368 -60.24 -152.03 REMARK 500 12 SER B 369 41.05 -145.12 REMARK 500 13 GLU A 335 -30.88 -144.69 REMARK 500 13 LYS B 370 48.17 -169.49 REMARK 500 13 TRP B 374 94.72 62.61 REMARK 500 14 VAL A 310 96.86 -60.08 REMARK 500 14 GLU A 335 -17.89 -168.84 REMARK 500 14 ARG B 368 -54.33 -145.16 REMARK 500 14 LYS B 370 118.11 170.25 REMARK 500 14 SER B 372 102.25 62.39 REMARK 500 14 TRP B 374 86.21 63.58 REMARK 500 15 GLU A 335 -28.63 -146.37 REMARK 500 15 LYS A 357 -73.29 -102.58 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2K00 A 309 400 UNP P54939 TLN1_CHICK 309 400 DBREF 2K00 B 367 381 UNP Q8C351 LAYN_MOUSE 367 381 SEQRES 1 A 92 GLY VAL SER PHE PHE LEU VAL LYS GLU LYS MET LYS GLY SEQRES 2 A 92 LYS ASN LYS LEU VAL PRO ARG LEU LEU GLY ILE THR LYS SEQRES 3 A 92 GLU CYS VAL MET ARG VAL ASP GLU LYS THR LYS GLU VAL SEQRES 4 A 92 ILE GLN GLU TRP SER LEU THR ASN ILE LYS ARG TRP ALA SEQRES 5 A 92 ALA SER PRO LYS SER PHE THR LEU ASP PHE GLY ASP TYR SEQRES 6 A 92 GLN ASP GLY TYR TYR SER VAL GLN THR THR GLU GLY GLU SEQRES 7 A 92 GLN ILE ALA GLN LEU ILE ALA GLY TYR ILE ASP ILE ILE SEQRES 8 A 92 LEU SEQRES 1 B 15 GLY ARG SER LYS GLU SER GLY TRP VAL GLU ASN GLU ILE SEQRES 2 B 15 TYR TYR HELIX 1 1 THR A 354 ILE A 356 5 3 HELIX 2 2 PHE A 370 GLN A 374 5 5 HELIX 3 3 GLU A 384 LEU A 400 1 17 SHEET 1 A 8 VAL A 347 SER A 352 0 SHEET 2 A 8 CYS A 336 ASP A 341 -1 N ARG A 339 O GLN A 349 SHEET 3 A 8 VAL A 326 ILE A 332 -1 N LEU A 329 O VAL A 340 SHEET 4 A 8 PHE A 312 GLU A 317 -1 N VAL A 315 O ARG A 328 SHEET 5 A 8 TYR A 378 GLN A 381 -1 O GLN A 381 N LYS A 316 SHEET 6 A 8 SER A 365 ASP A 369 -1 N PHE A 366 O VAL A 380 SHEET 7 A 8 ARG A 358 ALA A 361 -1 N ALA A 360 O THR A 367 SHEET 8 A 8 TRP B 374 GLU B 376 -1 O VAL B 375 N TRP A 359 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1