HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 04-FEB-08 2K0M TITLE SOLUTION NMR STRUCTURE OF THE UNCHARACTERIZED PROTEIN FROM TITLE 2 RHODOSPIRILLUM RUBRUM GENE LOCUS RRU_A0810. NORTHEAST STRUCTURAL TITLE 3 GENOMICS TARGET RRR43 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOSPIRILLUM RUBRUM ATCC 11170; SOURCE 3 ORGANISM_TAXID: 269796; SOURCE 4 STRAIN: NCIB 8255; SOURCE 5 ATCC: 11170; SOURCE 6 GENE: RRU_A0810; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21-23C KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.ROSSI,H.WANG,M.JIANG,E.L.FOOTE,R.XIAO,J.LIU,G.SWAPNA,T.B.ACTON, AUTHOR 2 M.C.BARAN,B.ROST,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 4 01-MAY-24 2K0M 1 REMARK REVDAT 3 19-FEB-20 2K0M 1 REMARK SEQADV REVDAT 2 24-FEB-09 2K0M 1 VERSN REVDAT 1 19-FEB-08 2K0M 0 JRNL AUTH P.ROSSI,R.XIAO,T.B.ACTON,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF THE UNCHARACTERIZED PROTEIN FROM JRNL TITL 2 RHODOSPIRILLUM RUBRUM GENE LOCUS RRU_A0810. NORTHEAST JRNL TITL 3 STRUCTURAL GENOMICS TARGET RRR43. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, PROCHECKNMR REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 LASKOWSKI AND MACARTHUR (PROCHECKNMR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K0M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000100525. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.15 MM [U-5% 13C; U-100% 15N] REMARK 210 RRR43, 20 MM MES, 10 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 100 MM REMARK 210 SODIUM CHLORIDE, 50 UM DSS, 5 MM REMARK 210 CALCIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O; 1.05 MM [U-100% 13C; U-100% REMARK 210 15N] RRR43, 20 MM MES, 10 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 100 MM REMARK 210 SODIUM CHLORIDE, 50 UM DSS, 5 MM REMARK 210 CALCIUM CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-COSY; 3D REMARK 210 HCCH-TOCSY; 3D CCH-TOCSY; 3D REMARK 210 CBCA(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN 2.4.0, CNS, NMRPIPE, REMARK 210 PSVS, TALOS, TOPSPIN 1.3, SPARKY REMARK 210 3.112, MOLMOL 2K2, MOLPROBITY REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: MONOMER BY GEL FILTRATION CHROMATOGRAPHY/LIGHT SCATTERING. REMARK 210 STRUCTURE DETERMINED BY TRIPLE RESONANCE NMR SPECTROSCOPY. NOESY REMARK 210 ASSIGNMENTS BY CYANA2.1. 20 OF 100 STRUCTURES LOWEST TARGET REMARK 210 FUNCTION SELECTED. MODELS ARE FURTHER REFINED USING CNS IN REMARK 210 EXPLICIT WATER SHELL (NILGES PROTOCOL WITH PARAM19). ASSIGNMENT REMARK 210 STATS (EXCLUDING C-TERM TAG): BACKBONE 94.7%, SIDECHAIN 93.1%, REMARK 210 AROMATIC (SC) 100%, VL METHYL STEREOSPECIFIC 100%, UNAMBIGUOUS REMARK 210 SIDECHAIN NH2 100%. STRUCTURE BASED ON 1727 NOE. MAX NOE REMARK 210 VIOLATION 0.25 A (1MODEL). 6 TOTAL CLOSE CONTACTS PER 20 MODELS. REMARK 210 STRUCTURE QUALITY FACTOR (PSVS 1.3): ORDERED RESIDUES RANGES - 6- REMARK 210 70, 75-94 (FOR [S(PHI)+S(PSI)] > 1.8) RMSD 0.6 BB, 1.0 ALL HEAVY REMARK 210 ATOMS. SECONDARY STRUCTURE ELEMENTS ALPHA HELICES: (17-30, 39-50, REMARK 210 55-59), BETA STRANDS: (7-9, 12-14, 35-36, 63-70, 76-82, 87-89). REMARK 210 RAMA. DISTRIBUTION: 90.2/9.7/0.1/0.1. PROCHECK (PSI-PHI): -0.29/- REMARK 210 0.83 (RAW/Z), PROCHECK (ALL): -0.22/-1.30 (RAW/Z), MOLPROBITY REMARK 210 CLASH: 15.46/-1.13 (RAW/Z). RPF SCORES ALL ASSIGNED RESIDUES REMARK 210 (FIT OF NOESY PEAKLISTS TO STRUCTURE): RECALL: 0.917, PRECISION: REMARK 210 0.895, F-MEASURE: 0.906, DP-SCORE: 0.738. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 33 19.24 -66.22 REMARK 500 1 ASP A 72 -72.43 -135.91 REMARK 500 1 LYS A 94 40.22 -100.82 REMARK 500 1 VAL A 96 -85.30 -106.93 REMARK 500 1 HIS A 100 -13.33 65.58 REMARK 500 1 HIS A 102 99.08 -59.43 REMARK 500 2 PRO A 33 77.77 -59.01 REMARK 500 2 VAL A 96 -94.69 -106.17 REMARK 500 2 HIS A 103 119.69 -173.93 REMARK 500 3 PRO A 33 76.26 -57.14 REMARK 500 3 ARG A 64 -67.17 -91.11 REMARK 500 3 ALA A 71 -81.87 -113.55 REMARK 500 3 ASP A 72 -83.32 -85.03 REMARK 500 3 TYR A 73 -66.39 -135.57 REMARK 500 3 CYS A 95 58.52 -179.10 REMARK 500 3 VAL A 96 -71.07 -103.91 REMARK 500 4 PRO A 33 25.02 -65.01 REMARK 500 4 ALA A 71 -74.81 -139.87 REMARK 500 4 LYS A 94 79.81 -110.58 REMARK 500 4 CYS A 95 -58.88 -125.99 REMARK 500 4 GLU A 98 -66.68 -96.50 REMARK 500 4 HIS A 99 -83.70 -127.49 REMARK 500 4 HIS A 102 86.51 72.87 REMARK 500 5 LYS A 3 37.36 -93.69 REMARK 500 5 GLN A 5 156.30 66.48 REMARK 500 5 PRO A 33 35.36 -67.35 REMARK 500 5 ASN A 65 -177.40 -171.92 REMARK 500 5 CYS A 95 38.06 -84.12 REMARK 500 5 VAL A 96 -64.88 -125.68 REMARK 500 5 HIS A 100 97.91 -177.86 REMARK 500 6 GLN A 5 149.63 69.93 REMARK 500 6 PRO A 33 26.71 -67.56 REMARK 500 6 THR A 75 -162.65 -100.09 REMARK 500 6 CYS A 95 53.08 -91.12 REMARK 500 6 VAL A 96 -76.80 -80.10 REMARK 500 6 LEU A 97 152.16 178.60 REMARK 500 6 HIS A 103 15.11 -143.57 REMARK 500 7 ALA A 4 88.88 -68.42 REMARK 500 7 PRO A 33 26.00 -65.06 REMARK 500 7 ALA A 71 -77.92 -138.50 REMARK 500 7 CYS A 95 43.01 -101.15 REMARK 500 7 VAL A 96 -77.10 -98.21 REMARK 500 7 LEU A 97 149.20 -171.93 REMARK 500 8 PRO A 33 31.49 -65.93 REMARK 500 8 THR A 75 -169.24 -102.43 REMARK 500 8 CYS A 95 13.47 -150.45 REMARK 500 8 HIS A 99 88.17 -62.55 REMARK 500 8 HIS A 103 -49.05 -134.77 REMARK 500 9 GLN A 5 149.95 72.57 REMARK 500 9 PRO A 33 26.19 -62.58 REMARK 500 REMARK 500 THIS ENTRY HAS 136 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RRR43 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15652 RELATED DB: BMRB DBREF 2K0M A 1 96 UNP Q2RW81 Q2RW81_RHORT 1 96 SEQADV 2K0M LEU A 97 UNP Q2RW81 EXPRESSION TAG SEQADV 2K0M GLU A 98 UNP Q2RW81 EXPRESSION TAG SEQADV 2K0M HIS A 99 UNP Q2RW81 EXPRESSION TAG SEQADV 2K0M HIS A 100 UNP Q2RW81 EXPRESSION TAG SEQADV 2K0M HIS A 101 UNP Q2RW81 EXPRESSION TAG SEQADV 2K0M HIS A 102 UNP Q2RW81 EXPRESSION TAG SEQADV 2K0M HIS A 103 UNP Q2RW81 EXPRESSION TAG SEQADV 2K0M HIS A 104 UNP Q2RW81 EXPRESSION TAG SEQRES 1 A 104 MET ALA LYS ALA GLN PRO ILE GLU ILE ALA GLY HIS GLU SEQRES 2 A 104 PHE ALA ARG LYS ALA ASP ALA LEU ALA PHE MET LYS VAL SEQRES 3 A 104 MET LEU ASN ARG TYR ARG PRO GLY ASP ILE VAL SER THR SEQRES 4 A 104 VAL ASP GLY ALA PHE LEU VAL GLU ALA LEU LYS ARG HIS SEQRES 5 A 104 PRO ASP ALA THR SER LYS ILE GLY PRO GLY VAL ARG ASN SEQRES 6 A 104 PHE GLU VAL ARG SER ALA ASP TYR GLY THR GLN CYS PHE SEQRES 7 A 104 TRP ILE LEU ARG THR ASP GLY SER GLU GLU ARG PHE SER SEQRES 8 A 104 TYR LYS LYS CYS VAL LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ARG A 16 TYR A 31 1 16 HELIX 2 2 SER A 38 ARG A 51 1 14 HELIX 3 3 ASP A 54 GLY A 60 1 7 HELIX 4 4 SER A 91 CYS A 95 5 5 SHEET 1 A 2 ILE A 7 ILE A 9 0 SHEET 2 A 2 HIS A 12 PHE A 14 -1 O PHE A 14 N ILE A 7 SHEET 1 B 4 ASP A 35 ILE A 36 0 SHEET 2 B 4 VAL A 63 SER A 70 -1 O VAL A 68 N ASP A 35 SHEET 3 B 4 GLN A 76 ARG A 82 -1 O TRP A 79 N GLU A 67 SHEET 4 B 4 GLU A 87 ARG A 89 -1 O GLU A 88 N ILE A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1