HEADER OXIDOREDUCTASE 13-FEB-08 2K0R TITLE SOLUTION STRUCTURE OF THE C103S MUTANT OF THE N-TERMINAL DOMAIN OF TITLE 2 DSBD FROM NEISSERIA MENINGITIDIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PERIPLASMIC DOMAIN; COMPND 5 SYNONYM: PROTEIN-DISULFIDE REDUCTASE, DISULFIDE REDUCTASE; COMPND 6 EC: 1.8.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS SEROGROUP B; SOURCE 3 ORGANISM_TAXID: 491; SOURCE 4 GENE: DSBD, NMB1519; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PETNDSBDC103S KEYWDS IMMUNOGLOBULIN, MUTANT, N-TERMINAL DOMAIN, DISULFIDE BOND REDUCTASE, KEYWDS 2 CYTOCHROME C-TYPE BIOGENESIS, ELECTRON TRANSPORT, INNER MEMBRANE, KEYWDS 3 MEMBRANE, NAD, OXIDOREDUCTASE, REDOX-ACTIVE CENTER, TRANSMEMBRANE, KEYWDS 4 TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.QUINTERNET,L.SELME,P.TSAN,C.BEAUFILS,C.JACOB,S.BOSCHI-MULLER, AUTHOR 2 M.AVERLANT-PETIT,G.BRANLANT,M.CUNG REVDAT 5 29-MAY-24 2K0R 1 REMARK REVDAT 4 20-OCT-21 2K0R 1 REMARK SEQADV REVDAT 3 31-MAR-09 2K0R 1 JRNL REVDAT 2 24-FEB-09 2K0R 1 VERSN REVDAT 1 11-NOV-08 2K0R 0 JRNL AUTH M.QUINTERNET,P.TSAN,L.SELME,C.BEAUFILS,C.JACOB, JRNL AUTH 2 S.BOSCHI-MULLER,M.C.AVERLANT-PETIT,G.BRANLANT,M.T.CUNG JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE CYSTEINE 103 JRNL TITL 2 TO SERINE MUTANT OF THE N-TERMINAL DOMAIN OF DSBD FROM JRNL TITL 3 NEISSERIA MENINGITIDIS. JRNL REF BIOCHEMISTRY V. 47 12710 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18983169 JRNL DOI 10.1021/BI801343C REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0, CYANA 2.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K0R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000100530. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 3 -69.79 -96.21 REMARK 500 1 ASN A 6 177.17 58.50 REMARK 500 1 ALA A 50 57.72 -163.74 REMARK 500 1 LYS A 60 141.14 66.52 REMARK 500 1 PHE A 69 -34.67 -175.01 REMARK 500 1 HIS A 77 -50.97 -172.77 REMARK 500 1 PHE A 119 29.91 -153.98 REMARK 500 1 ASN A 121 -36.84 179.76 REMARK 500 1 GLN A 127 49.19 -91.54 REMARK 500 2 ALA A 2 82.50 -176.10 REMARK 500 2 LEU A 3 83.60 53.32 REMARK 500 2 ASN A 6 174.33 63.23 REMARK 500 2 ASN A 48 160.28 178.15 REMARK 500 2 ALA A 50 65.48 -164.89 REMARK 500 2 LYS A 60 107.66 63.90 REMARK 500 2 PHE A 69 -34.75 -175.05 REMARK 500 2 HIS A 77 -50.94 -175.87 REMARK 500 2 PHE A 119 29.49 -155.70 REMARK 500 2 ASN A 121 -43.28 -177.97 REMARK 500 2 GLN A 127 57.30 -103.85 REMARK 500 3 ALA A 2 74.07 57.30 REMARK 500 3 ALA A 5 59.60 -171.96 REMARK 500 3 ASN A 6 168.00 179.84 REMARK 500 3 ASN A 48 159.95 175.46 REMARK 500 3 ALA A 50 -47.47 -179.21 REMARK 500 3 ASP A 51 38.29 177.52 REMARK 500 3 LYS A 60 107.63 63.69 REMARK 500 3 PHE A 69 -34.79 -174.51 REMARK 500 3 HIS A 77 -48.96 -174.19 REMARK 500 3 PHE A 119 25.93 -148.01 REMARK 500 3 ASN A 121 -49.71 177.19 REMARK 500 3 GLN A 127 45.67 -105.95 REMARK 500 4 ALA A 2 176.61 61.20 REMARK 500 4 ASN A 6 177.71 63.40 REMARK 500 4 ASN A 48 157.40 178.96 REMARK 500 4 ALA A 50 53.78 -165.70 REMARK 500 4 PHE A 69 -35.44 -174.57 REMARK 500 4 HIS A 77 -56.80 -175.54 REMARK 500 4 ALA A 79 91.54 -161.90 REMARK 500 4 PHE A 119 28.21 -154.26 REMARK 500 4 ASN A 121 -33.65 179.88 REMARK 500 4 GLN A 127 54.12 -100.89 REMARK 500 5 ALA A 2 179.74 60.26 REMARK 500 5 ALA A 5 -173.34 -178.06 REMARK 500 5 ASN A 6 -179.98 57.25 REMARK 500 5 ASN A 48 159.41 174.53 REMARK 500 5 LYS A 60 117.61 66.13 REMARK 500 5 PHE A 69 -34.31 -174.42 REMARK 500 5 HIS A 77 -61.07 -177.17 REMARK 500 5 PHE A 119 30.29 -157.87 REMARK 500 REMARK 500 THIS ENTRY HAS 218 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15627 RELATED DB: BMRB DBREF 2K0R A 2 128 UNP Q9JYM0 DSBD_NEIMB 20 146 SEQADV 2K0R MET A 1 UNP Q9JYM0 EXPRESSION TAG SEQADV 2K0R ASN A 48 UNP Q9JYM0 ASP 66 ENGINEERED MUTATION SEQADV 2K0R SER A 102 UNP Q9JYM0 CYS 120 ENGINEERED MUTATION SEQRES 1 A 128 MET ALA LEU ASP ALA ASN ASP LEU LEU PRO PRO GLU LYS SEQRES 2 A 128 ALA PHE VAL PRO GLU LEU ALA VAL ALA ASP ASP GLY VAL SEQRES 3 A 128 ASN VAL ARG PHE ARG ILE ALA ASP GLY TYR TYR MET TYR SEQRES 4 A 128 GLN ALA LYS ILE VAL GLY LYS THR ASN PRO ALA ASP LEU SEQRES 5 A 128 LEU GLY GLN PRO SER PHE SER LYS GLY GLU GLU LYS GLU SEQRES 6 A 128 ASP GLU PHE PHE GLY ARG GLN THR VAL TYR HIS HIS GLU SEQRES 7 A 128 ALA GLN VAL ALA PHE PRO TYR ALA LYS ALA VAL GLY GLU SEQRES 8 A 128 PRO TYR LYS LEU VAL LEU THR TYR GLN GLY SER ALA GLU SEQRES 9 A 128 ALA GLY VAL CYS TYR PRO PRO VAL ASP THR GLU PHE ASP SEQRES 10 A 128 ILE PHE GLY ASN GLY THR TYR HIS PRO GLN THR HELIX 1 1 ALA A 5 LEU A 9 5 5 SHEET 1 A 5 SER A 57 PHE A 58 0 SHEET 2 A 5 GLN A 80 PRO A 84 -1 O ALA A 82 N SER A 57 SHEET 3 A 5 GLY A 25 ILE A 32 -1 N VAL A 26 O PHE A 83 SHEET 4 A 5 PHE A 15 VAL A 21 -1 N ALA A 20 O ASN A 27 SHEET 5 A 5 THR A 123 TYR A 124 -1 O TYR A 124 N LEU A 19 SHEET 1 B 5 GLU A 62 GLU A 65 0 SHEET 2 B 5 ARG A 71 TYR A 75 -1 O VAL A 74 N GLU A 62 SHEET 3 B 5 TYR A 36 TYR A 39 -1 N MET A 38 O TYR A 75 SHEET 4 B 5 GLY A 101 ALA A 103 -1 O SER A 102 N TYR A 37 SHEET 5 B 5 VAL A 107 CYS A 108 -1 O VAL A 107 N ALA A 103 SHEET 1 C 3 VAL A 44 ASN A 48 0 SHEET 2 C 3 TYR A 93 TYR A 99 -1 O VAL A 96 N LYS A 46 SHEET 3 C 3 VAL A 112 ILE A 118 -1 O THR A 114 N LEU A 97 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1