HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-FEB-08 2K0Z TITLE SOLUTION NMR STRUCTURE OF PROTEIN HP1203 FROM HELICOBACTER PYLORI TITLE 2 26695. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET TITLE 3 PT1/ONTARIO CENTER FOR STRUCTURAL PROTEOMICS TARGET HP1203 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN HP1203; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 ATCC: 700392; SOURCE 6 GENE: HP_1223; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P11 KEYWDS A/B DOMAIN, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.WU,A.YEE,A.LEMAK,J.CORT,A.SEMEST,M.A.KENNEY,C.H.ARROWSMITH, AUTHOR 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 01-MAY-24 2K0Z 1 REMARK REVDAT 3 13-JUL-11 2K0Z 1 VERSN REVDAT 2 24-FEB-09 2K0Z 1 VERSN REVDAT 1 04-MAR-08 2K0Z 0 JRNL AUTH B.WU,A.YEE,A.LEMAK,J.CORT,A.SEMEST,M.A.KENNEY,C.H.ARROWSMITH JRNL TITL SOLUTION NMR STRUCTURE OF PROTEIN HP1203 FROM HELICOBACTER JRNL TITL 2 PYLORI 26695. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM JRNL TITL 3 (NESG) TARGET PT1/ONTARIO CENTER FOR STRUCTURAL PROTEOMICS JRNL TITL 4 TARGET HP1203. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.3, CNS 1.0 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K0Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000100538. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7; 7 REMARK 210 IONIC STRENGTH : 300; 300 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 UNKNOWN FUNCTION PROTEIN HP1203 REMARK 210 FROM HELICOBACTER PYLORI 26695, REMARK 210 10 MM [U-100% 2H] TRIS-HCL, 300 REMARK 210 MM SODIUM CHLORIDE, 0.01 % REMARK 210 SODIUM AZIDE, 10 MM BENZAMIDINE, REMARK 210 90% H2O/10% D2O; 0.5 MM [U-7% REMARK 210 13C; U-99% 15N] UNKNOWN FUNCTION REMARK 210 PROTEIN HP1203 FROM HELICOBACTER REMARK 210 PYLORI 26695, 10 MM [U-100% 2H] REMARK 210 TRIS-HCL, 300 MM SODIUM CHLORIDE, REMARK 210 0.01 % SODIUM AZIDE, 10 MM REMARK 210 BENZAMIDINE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HN(CO)CA; 3D C(CO)NH; REMARK 210 3D H(CCO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HNHA; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; AIV 3D 1H-13C NOESY; 2D REMARK 210 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.95, AUTOASSIGN, CYANA REMARK 210 2.1, AUTOSTRUCTURE 2.1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 23 -89.41 -148.79 REMARK 500 1 HIS A 54 115.09 -162.92 REMARK 500 1 ASP A 103 86.04 63.90 REMARK 500 1 CYS A 106 -69.60 -153.48 REMARK 500 1 LYS A 108 33.46 -87.88 REMARK 500 2 ARG A 23 -85.55 -145.66 REMARK 500 2 ASP A 56 69.45 -116.33 REMARK 500 2 LYS A 108 -70.48 -125.65 REMARK 500 2 LYS A 109 179.80 61.64 REMARK 500 3 ARG A 23 -83.31 -146.81 REMARK 500 4 ARG A 23 -100.67 -147.65 REMARK 500 4 LEU A 31 145.85 179.71 REMARK 500 4 HIS A 54 -39.95 -150.82 REMARK 500 4 LYS A 55 -55.46 72.65 REMARK 500 4 ALA A 65 -42.27 -142.73 REMARK 500 4 CYS A 106 -53.93 -172.91 REMARK 500 4 ASP A 107 93.54 -163.99 REMARK 500 4 LYS A 109 79.55 -168.85 REMARK 500 5 ARG A 23 -86.69 -153.06 REMARK 500 5 HIS A 54 -39.92 -149.59 REMARK 500 5 LYS A 55 -52.96 72.69 REMARK 500 5 CYS A 106 -135.32 66.76 REMARK 500 5 LYS A 109 -173.31 65.18 REMARK 500 6 ARG A 23 -86.34 -146.77 REMARK 500 6 HIS A 54 -46.81 -131.44 REMARK 500 6 LYS A 55 -49.54 71.28 REMARK 500 6 THR A 105 -76.90 55.03 REMARK 500 6 ASP A 107 141.70 65.87 REMARK 500 6 LYS A 109 -34.51 -145.02 REMARK 500 7 ARG A 23 -91.27 -150.27 REMARK 500 7 LEU A 31 146.81 -174.55 REMARK 500 7 ALA A 65 -66.64 -105.24 REMARK 500 7 ASP A 107 33.18 -86.70 REMARK 500 8 ARG A 23 -87.72 -145.46 REMARK 500 8 ASP A 103 90.41 56.68 REMARK 500 9 ARG A 23 -79.12 -152.82 REMARK 500 9 LEU A 31 134.68 -173.30 REMARK 500 9 ALA A 65 -60.53 -124.26 REMARK 500 9 THR A 105 100.02 -56.71 REMARK 500 10 GLU A 11 20.22 -149.56 REMARK 500 10 ARG A 23 -91.02 -146.35 REMARK 500 10 LEU A 31 144.48 -170.46 REMARK 500 10 ASP A 103 60.87 63.10 REMARK 500 10 ASP A 107 85.30 -64.06 REMARK 500 11 ALA A 6 99.02 -65.84 REMARK 500 11 ARG A 23 -110.78 -147.32 REMARK 500 11 HIS A 54 -46.15 -139.60 REMARK 500 11 LYS A 55 -54.66 73.02 REMARK 500 11 ALA A 65 -60.06 -98.35 REMARK 500 11 CYS A 106 -76.56 -151.98 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PT1 RELATED DB: TARGETDB DBREF 2K0Z A 1 110 UNP O25821 O25821_HELPY 1 110 SEQRES 1 A 110 MET LEU GLU ASP TYR ALA ILE SER LEU GLU GLU VAL ASN SEQRES 2 A 110 PHE ASN ASP PHE ILE VAL VAL ASP VAL ARG GLU LEU ASP SEQRES 3 A 110 GLU TYR GLU GLU LEU HIS LEU PRO ASN ALA THR LEU ILE SEQRES 4 A 110 SER VAL ASN ASP GLN GLU LYS LEU ALA ASP PHE LEU SER SEQRES 5 A 110 GLN HIS LYS ASP LYS LYS VAL LEU LEU HIS CYS ARG ALA SEQRES 6 A 110 GLY ARG ARG ALA LEU ASP ALA ALA LYS SER MET HIS GLU SEQRES 7 A 110 LEU GLY TYR THR PRO TYR TYR LEU GLU GLY ASN VAL TYR SEQRES 8 A 110 ASP PHE GLU LYS TYR GLY PHE ARG MET VAL TYR ASP ASP SEQRES 9 A 110 THR CYS ASP LYS LYS ASN HELIX 1 1 ASN A 13 PHE A 17 5 5 HELIX 2 2 GLU A 24 LEU A 31 1 8 HELIX 3 3 ASP A 43 GLN A 53 1 11 HELIX 4 4 GLY A 66 LEU A 79 1 14 HELIX 5 5 ASN A 89 PHE A 93 5 5 SHEET 1 A 5 ALA A 6 SER A 8 0 SHEET 2 A 5 TYR A 84 GLU A 87 1 O TYR A 85 N ILE A 7 SHEET 3 A 5 VAL A 59 HIS A 62 1 N VAL A 59 O TYR A 84 SHEET 4 A 5 ILE A 18 ARG A 23 1 N VAL A 20 O LEU A 60 SHEET 5 A 5 ALA A 36 SER A 40 1 O ILE A 39 N ASP A 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1