HEADER UNKNOWN FUNCTION 29-FEB-08 2K1D TITLE NMR STUDIES OF A PATHOGENIC MUTANT (D178N) OF THE HUMAN PRION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUE 90-231; COMPND 5 SYNONYM: PRP, PRP27-30, PRP33-35C, ASCR, CD230 ANTIGEN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRNP, PRIP, PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PRSETB KEYWDS PRION PROTEIN, M/V 129 POLYMORPHISM, D178N, DISEASE MUTATION, FFI, KEYWDS 2 GSS, GLYCOPROTEIN, GOLGI APPARATUS, GPI-ANCHOR, LIPOPROTEIN, KEYWDS 3 MEMBRANE, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.L.MILLS,K.SUREWICZ,W.K.SUREWICZ,F.D.SONNICHSEN REVDAT 6 08-MAY-24 2K1D 1 REMARK REVDAT 5 14-JUN-23 2K1D 1 REMARK REVDAT 4 20-OCT-21 2K1D 1 SEQADV REVDAT 3 19-FEB-20 2K1D 1 SEQADV REVDAT 2 22-JUL-15 2K1D 1 JRNL VERSN REVDAT 1 03-MAR-09 2K1D 0 JRNL AUTH J.L.MILLS,K.SUREWICZ,W.K.SUREWICZ,F.D.SONNICHSEN JRNL TITL RESIDUE 129 POLYMORPHISM AND CONFORMATIONAL DYNAMICS OF JRNL TITL 2 FAMILIAL PRION DISEASES ASSOCIATED WITH THE HUMAN PRION JRNL TITL 3 PROTEIN VARIANT D178N JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000100552. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 299 REMARK 210 PH : 4.6 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 350 UM [U-99% 13C; U-99% 15N] REMARK 210 V129/D178N PRION PROTEIN, 10 MM REMARK 210 SODIUM ACETATE, 100 UM SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D C(CO)NH; 3D H(CCO)NH; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING STANDARD TRIPLE REMARK 210 RESONANCE EXPERIMENTS RECORDED WITH 13C, 15N LABELED PROTEIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 86 REMARK 465 SER A 87 REMARK 465 ASP A 88 REMARK 465 PRO A 89 REMARK 465 GLY A 90 REMARK 465 GLN A 91 REMARK 465 GLY A 92 REMARK 465 GLY A 93 REMARK 465 GLY A 94 REMARK 465 THR A 95 REMARK 465 HIS A 96 REMARK 465 SER A 97 REMARK 465 GLN A 98 REMARK 465 TRP A 99 REMARK 465 ASN A 100 REMARK 465 LYS A 101 REMARK 465 PRO A 102 REMARK 465 SER A 103 REMARK 465 LYS A 104 REMARK 465 PRO A 105 REMARK 465 LYS A 106 REMARK 465 THR A 107 REMARK 465 ASN A 108 REMARK 465 MET A 109 REMARK 465 LYS A 110 REMARK 465 HIS A 111 REMARK 465 MET A 112 REMARK 465 ALA A 113 REMARK 465 GLY A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 ALA A 117 REMARK 465 ALA A 118 REMARK 465 GLY A 119 REMARK 465 ALA A 120 REMARK 465 VAL A 121 REMARK 465 VAL A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 124 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 132 -177.39 62.90 REMARK 500 1 ALA A 133 -169.82 -74.12 REMARK 500 1 ARG A 136 73.51 63.24 REMARK 500 1 PHE A 141 -74.42 -132.26 REMARK 500 1 GLU A 168 64.08 -170.69 REMARK 500 1 TYR A 169 26.68 -145.07 REMARK 500 1 ASN A 171 171.48 -55.24 REMARK 500 1 ARG A 228 168.65 62.32 REMARK 500 2 SER A 132 -73.75 -171.47 REMARK 500 2 ALA A 133 -169.77 -170.69 REMARK 500 2 ARG A 136 74.09 61.10 REMARK 500 2 PHE A 141 -72.47 -146.43 REMARK 500 2 MET A 166 52.91 -150.50 REMARK 500 2 GLU A 168 -71.04 -109.93 REMARK 500 2 TYR A 169 32.11 -172.79 REMARK 500 2 SER A 230 178.36 59.77 REMARK 500 3 SER A 132 -74.16 -54.61 REMARK 500 3 ARG A 136 73.44 60.91 REMARK 500 3 ILE A 138 108.71 -51.78 REMARK 500 3 TYR A 169 -71.75 -56.45 REMARK 500 3 ASN A 171 166.75 62.53 REMARK 500 4 TYR A 128 168.52 63.07 REMARK 500 4 SER A 132 -176.20 -173.69 REMARK 500 4 ARG A 136 70.61 57.97 REMARK 500 4 PRO A 137 78.66 -69.70 REMARK 500 4 PHE A 141 -71.25 -52.04 REMARK 500 4 ASN A 159 25.57 -143.56 REMARK 500 4 GLN A 160 130.35 -178.17 REMARK 500 4 SER A 170 -62.09 -127.30 REMARK 500 5 PRO A 137 78.70 -69.76 REMARK 500 5 PHE A 141 -70.37 -53.21 REMARK 500 5 GLU A 168 176.60 -56.37 REMARK 500 6 SER A 132 -64.27 -171.50 REMARK 500 6 ARG A 136 73.96 63.26 REMARK 500 6 PHE A 141 -70.38 -110.09 REMARK 500 6 SER A 230 -174.33 56.10 REMARK 500 7 ARG A 136 73.51 60.91 REMARK 500 7 ILE A 138 100.54 -56.84 REMARK 500 7 HIS A 140 104.63 -52.00 REMARK 500 7 GLN A 160 144.35 -175.33 REMARK 500 7 PRO A 165 80.89 -69.82 REMARK 500 7 ASP A 167 70.56 52.71 REMARK 500 7 GLU A 168 49.82 -108.95 REMARK 500 7 TYR A 169 -44.87 -131.16 REMARK 500 7 GLN A 227 170.25 -57.58 REMARK 500 8 ARG A 136 73.32 56.04 REMARK 500 8 ILE A 138 104.70 -52.00 REMARK 500 8 HIS A 140 103.47 -52.70 REMARK 500 8 MET A 166 95.63 60.37 REMARK 500 8 ASP A 167 -64.38 -140.14 REMARK 500 REMARK 500 THIS ENTRY HAS 139 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FO7 RELATED DB: PDB REMARK 900 E200K VARIANT OF THE HUMAN PRION PROTEIN REMARK 900 RELATED ID: 1QM1 RELATED DB: PDB REMARK 900 WILD TYPE HUMAN PRION PROTEIN REMARK 900 RELATED ID: 15676 RELATED DB: BMRB DBREF 2K1D A 90 231 UNP P04156 PRIO_HUMAN 90 231 SEQADV 2K1D GLY A 86 UNP P04156 EXPRESSION TAG SEQADV 2K1D SER A 87 UNP P04156 EXPRESSION TAG SEQADV 2K1D ASP A 88 UNP P04156 EXPRESSION TAG SEQADV 2K1D PRO A 89 UNP P04156 EXPRESSION TAG SEQADV 2K1D VAL A 129 UNP P04156 MET 129 VARIANT SEQADV 2K1D ASN A 178 UNP P04156 ASP 178 ENGINEERED MUTATION SEQRES 1 A 146 GLY SER ASP PRO GLY GLN GLY GLY GLY THR HIS SER GLN SEQRES 2 A 146 TRP ASN LYS PRO SER LYS PRO LYS THR ASN MET LYS HIS SEQRES 3 A 146 MET ALA GLY ALA ALA ALA ALA GLY ALA VAL VAL GLY GLY SEQRES 4 A 146 LEU GLY GLY TYR VAL LEU GLY SER ALA MET SER ARG PRO SEQRES 5 A 146 ILE ILE HIS PHE GLY SER ASP TYR GLU ASP ARG TYR TYR SEQRES 6 A 146 ARG GLU ASN MET HIS ARG TYR PRO ASN GLN VAL TYR TYR SEQRES 7 A 146 ARG PRO MET ASP GLU TYR SER ASN GLN ASN ASN PHE VAL SEQRES 8 A 146 HIS ASN CYS VAL ASN ILE THR ILE LYS GLN HIS THR VAL SEQRES 9 A 146 THR THR THR THR LYS GLY GLU ASN PHE THR GLU THR ASP SEQRES 10 A 146 VAL LYS MET MET GLU ARG VAL VAL GLU GLN MET CYS ILE SEQRES 11 A 146 THR GLN TYR GLU ARG GLU SER GLN ALA TYR TYR GLN ARG SEQRES 12 A 146 GLY SER SER HELIX 1 1 SER A 143 MET A 154 1 12 HELIX 2 2 HIS A 155 TYR A 157 5 3 HELIX 3 3 ASN A 171 GLY A 195 1 25 HELIX 4 4 THR A 199 GLN A 217 1 19 HELIX 5 5 TYR A 218 GLN A 227 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1