HEADER TRANSCRIPTION 13-MAR-08 2K1P TITLE SOLUTION STRUCTURE OF THE SECOND ZINC FINGER DOMAIN OF ZRANB2/ZNF265 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RANBP2-TYPE 2, RESIDUES 65-95; COMPND 5 SYNONYM: ZINC FINGER PROTEIN 265, ZINC FINGER, SPLICING; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZRANB2, ZIS, ZNF265; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX2T KEYWDS ZINC FINGER, ZNF265, RNA BINDING, RANBP2, RBZ, ZIS, ALTERNATIVE KEYWDS 2 SPLICING, METAL-BINDING, MRNA PROCESSING, MRNA SPLICING, NUCLEUS, KEYWDS 3 PHOSPHOPROTEIN, POLYMORPHISM, RNA-BINDING, ZINC-FINGER, KEYWDS 4 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.E.LOUGHLIN,J.P.MACKAY REVDAT 2 29-NOV-17 2K1P 1 REMARK REVDAT 1 17-MAR-09 2K1P 0 JRNL AUTH F.E.LOUGHLIN,R.E.MANSFIELD,P.M.VAZ,W.LEUNG,S.SETIYAPUTRA, JRNL AUTH 2 R.P.GRANT,E.S.CHEN,R.GAMSJAEGER,J.P.MACKAY JRNL TITL THE ZINC FINGERS OF THE SR-PROEIN ZRANB2 RECOGNIZE 5'SPLICE JRNL TITL 2 SITE-LIKE SEQUENCES AND CONSTITUTE A DISTINCT CLASS OF RNA JRNL TITL 3 BINDING DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, DYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), GUNTERT, BRAUN AND REMARK 3 WUTHRICH (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE CALCULATIONS WERE PERFORMED REMARK 3 USING THE PACKAGE ARIA1.2 (AMBIGUOUS RESTRAINTS IN ITERATIVE REMARK 3 ASSIGNMENT). FINAL STRUCTURES ARE BASED ON 654 UNAMBIGUOUS NOE- REMARK 3 DERIVED DISTANCE CONSTRAINTS, 38 SETS OF AMBIGUOUS NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS AND 19 ADDITIONAL DIHEDRAL ANGLE RESTRAINTS. REMARK 4 REMARK 4 2K1P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000100564. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 275; 278 REMARK 210 PH : 7.0; 7.0 REMARK 210 IONIC STRENGTH : 0.025; 0.025 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.45 MM ZRANB2 ZINC FINGER 2, 10 REMARK 210 % D2O, 1 MM DTT, 25 MM POTASSIUM REMARK 210 PHOSPHATE, 25 MM SODIUM CHLORIDE, REMARK 210 90% H2O/10% D2O; 0.4 MM [U-100% REMARK 210 15N] ZRANB2 ZINC FINGER 2, 10 % REMARK 210 D2O, 1 MM DTT, 25 MM POTASSIUM REMARK 210 PHOSPHATE, 25 MM SODIUM CHLORIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D DQF-COSY; 2D REMARK 210 1H-1H NOESY; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA, TOPSPIN, DYANA REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 67 -68.69 -159.42 REMARK 500 1 THR A 73 -64.26 -90.32 REMARK 500 1 ASN A 78 -120.79 -79.46 REMARK 500 1 ALA A 80 20.96 -73.81 REMARK 500 1 ARG A 81 28.88 177.01 REMARK 500 2 ASN A 78 -164.15 -79.89 REMARK 500 2 ARG A 81 -9.81 161.09 REMARK 500 2 LYS A 92 -79.61 -18.01 REMARK 500 3 ALA A 66 -66.46 -100.38 REMARK 500 3 ASN A 78 -158.94 -79.26 REMARK 500 3 ALA A 80 28.09 -72.68 REMARK 500 3 ARG A 81 16.51 175.75 REMARK 500 3 CYS A 88 -64.89 -109.90 REMARK 500 3 ASN A 89 -11.62 150.23 REMARK 500 4 SER A 65 51.29 -107.70 REMARK 500 4 ASP A 68 98.39 -60.91 REMARK 500 4 ASN A 78 -134.38 -81.48 REMARK 500 4 ARG A 81 48.71 -157.13 REMARK 500 4 MET A 87 -61.24 -99.73 REMARK 500 4 LYS A 92 -66.43 -18.72 REMARK 500 4 TYR A 93 35.73 -145.43 REMARK 500 5 ALA A 66 -74.29 -100.35 REMARK 500 5 ASN A 78 -156.12 -80.26 REMARK 500 5 ARG A 81 48.39 -154.46 REMARK 500 5 LYS A 92 -60.24 -29.27 REMARK 500 6 ASN A 67 -70.51 -78.71 REMARK 500 6 LYS A 72 38.79 -88.14 REMARK 500 6 THR A 73 -56.86 -132.81 REMARK 500 6 ASN A 78 -143.32 -88.36 REMARK 500 6 ARG A 81 24.88 -163.77 REMARK 500 6 LYS A 92 -78.67 -17.61 REMARK 500 7 SER A 64 -79.74 -53.61 REMARK 500 7 SER A 65 55.10 -92.37 REMARK 500 7 ASN A 78 -147.79 -84.53 REMARK 500 7 ALA A 80 -38.66 -38.20 REMARK 500 7 LYS A 92 -80.28 -19.25 REMARK 500 7 ALA A 94 51.18 -117.93 REMARK 500 8 SER A 64 63.45 -110.26 REMARK 500 8 ALA A 66 -81.32 -64.43 REMARK 500 8 ASN A 67 44.46 -159.46 REMARK 500 8 THR A 73 -69.46 -128.93 REMARK 500 8 ASN A 78 -135.89 -79.52 REMARK 500 8 ALA A 80 -37.22 -38.55 REMARK 500 8 ARG A 81 34.20 -140.84 REMARK 500 9 ASN A 67 -59.21 -130.74 REMARK 500 9 ASN A 78 -130.51 -82.26 REMARK 500 9 ARG A 81 43.54 -175.11 REMARK 500 9 LYS A 92 -74.77 -19.90 REMARK 500 10 SER A 64 55.52 -103.52 REMARK 500 10 ASN A 78 -113.45 -79.19 REMARK 500 REMARK 500 THIS ENTRY HAS 92 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 96 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 71 SG REMARK 620 2 CYS A 74 SG 106.8 REMARK 620 3 CYS A 85 SG 109.6 110.4 REMARK 620 4 CYS A 88 SG 111.1 107.8 110.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 96 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QU6 RELATED DB: PDB REMARK 900 ZINC FINGER 1 FROM ZNF265 / ZRANB2 REMARK 900 RELATED ID: 1NJ3 RELATED DB: PDB REMARK 900 ZINC FINGER FROM NPL4 REMARK 900 RELATED ID: 2C6B RELATED DB: PDB REMARK 900 ZINC FINGER FROM HDM2 REMARK 900 RELATED ID: 2CR8 RELATED DB: PDB REMARK 900 ZINC FINGER FROM MDM4 REMARK 900 RELATED ID: 2GQE RELATED DB: PDB REMARK 900 ZINC FINGER FROM NUP153 DBREF 2K1P A 65 95 UNP O95218 ZRAB2_HUMAN 65 95 SEQADV 2K1P GLY A 63 UNP O95218 EXPRESSION TAG SEQADV 2K1P SER A 64 UNP O95218 EXPRESSION TAG SEQRES 1 A 33 GLY SER SER ALA ASN ASP TRP GLN CYS LYS THR CYS SER SEQRES 2 A 33 ASN VAL ASN TRP ALA ARG ARG SER GLU CYS ASN MET CYS SEQRES 3 A 33 ASN THR PRO LYS TYR ALA LYS HET ZN A 96 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ LINK SG CYS A 71 ZN ZN A 96 1555 1555 2.24 LINK SG CYS A 74 ZN ZN A 96 1555 1555 2.25 LINK SG CYS A 85 ZN ZN A 96 1555 1555 2.30 LINK SG CYS A 88 ZN ZN A 96 1555 1555 2.27 SITE 1 AC1 4 CYS A 71 THR A 73 CYS A 74 MET A 87 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1