HEADER HYDROLASE/CHAPERONE 14-MAR-08 2K1R TITLE THE SOLUTION NMR STRUCTURE OF THE COMPLEX BETWEEN MNK1 AND HAH1 TITLE 2 MEDIATED BY CU(I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-TRANSPORTING ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HMA 1 DOMAIN: RESIDUES 5-77; COMPND 5 SYNONYM: COPPER PUMP 1, MENKES DISEASE-ASSOCIATED PROTEIN; COMPND 6 EC: 3.6.3.4; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: COPPER TRANSPORT PROTEIN ATOX1; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: METAL TRANSPORT PROTEIN ATX1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: ATP7A, MC1, MNK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYSS(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET20; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 GENE: ATOX1, HAH1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYSS(DE3); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET20 KEYWDS MNK1, HAH1, PROTEIN-PROTEIN INTERACTION, ATP7A, SPINE 2, STRUCTURAL KEYWDS 2 PROTEOMICS IN EUROPE, ALTERNATIVE SPLICING, ATP-BINDING, COPPER, KEYWDS 3 COPPER TRANSPORT, CYTOPLASM, DISEASE MUTATION, ENDOPLASMIC KEYWDS 4 RETICULUM, GLYCOPROTEIN, GOLGI APPARATUS, HYDROLASE, ION TRANSPORT, KEYWDS 5 MAGNESIUM, MEMBRANE, METAL-BINDING, NUCLEOTIDE-BINDING, KEYWDS 6 PHOSPHOPROTEIN, POLYMORPHISM, TRANSMEMBRANE, TRANSPORT, CHAPERONE, KEYWDS 7 HYDROLASE-CHAPERONE COMPLEX, STRUCTURAL GENOMICS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.BERTINI,L.C.BANCI,I.C.FELLI,A.PAVELKOVA,A.ROSATO,STRUCTURAL AUTHOR 2 PROTEOMICS IN EUROPE (SPINE) REVDAT 2 16-MAR-22 2K1R 1 REMARK REVDAT 1 31-MAR-09 2K1R 0 JRNL AUTH I.BERTINI,L.C.BANCI,I.C.FELLI,A.PAVELKOVA,A.ROSATO JRNL TITL THE SOLUTION STRUCTURE OF THE COPPER(I)-MEDIATED COMPLEX JRNL TITL 2 BETWEEN THE FIRST SOLUBLE DOMAIN OF THE MENKES PROTEIN AND JRNL TITL 3 THE METALLOCHAPERONE HAH1. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, AMBER REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), CASE, REMARK 3 DARDEN, CHEATHAM III, SIMMERLING, WANG, DUKE, LUO, REMARK 3 ET.AL, AND KOLLM (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MD IN EXPLICIT SOLVENT REMARK 4 REMARK 4 2K1R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000100566. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298; 298 REMARK 210 PH : 7.0; 7.0; 7.0; 7.0 REMARK 210 IONIC STRENGTH : NULL; NULL; NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM MNK1, 0.6 MM [U-100% 13C; REMARK 210 U-100% 15N] HAH1, 0.6 MM REMARK 210 COPPER(I) ION, 90% H2O/10% D2O; REMARK 210 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 MNK1, 0.6 MM HAH1, 0.6 MM REMARK 210 COPPER(I) ION, 90% H2O/10% D2O; REMARK 210 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 MNK1, 1.0 MM HAH1, 1.0 MM REMARK 210 COPPER(I) ION, 90% H2O/10% D2O; REMARK 210 1.0 MM MNK1, 0.6 MM [U-100% 13C; REMARK 210 U-100% 15N] HAH1, 1.0 MM REMARK 210 COPPER(I) ION, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCACB; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 13C-EDITED,13C-EDITED,13C,15N-FILTERED REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ; 500 MHZ; 600 MHZ; 700 REMARK 210 MHZ; 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 20 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG B 94 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 9 ARG B 94 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 10 ARG B 94 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 9 86.13 -69.91 REMARK 500 1 GLU A 11 0.12 -65.58 REMARK 500 1 THR A 14 -26.84 -167.22 REMARK 500 1 CYS A 15 -91.04 -82.89 REMARK 500 1 ASN A 16 -52.61 -124.14 REMARK 500 1 LYS A 42 66.38 35.58 REMARK 500 1 MET A 65 -132.03 -116.45 REMARK 500 1 HIS A 72 52.07 -158.99 REMARK 500 1 LYS B 76 96.05 -66.50 REMARK 500 1 ASP B 82 70.20 -66.84 REMARK 500 2 SER A 9 95.30 -67.94 REMARK 500 2 THR A 14 11.12 -160.16 REMARK 500 2 HIS A 72 -158.68 -135.96 REMARK 500 2 CYS B 85 -115.50 -85.39 REMARK 500 3 SER A 9 80.98 -66.23 REMARK 500 3 THR A 14 50.50 -175.44 REMARK 500 3 ASN A 16 -28.95 -141.29 REMARK 500 3 SER A 17 -2.85 -147.37 REMARK 500 3 ASN A 30 -34.84 134.86 REMARK 500 3 MET A 65 -115.09 -108.48 REMARK 500 3 ASP B 82 45.89 -75.57 REMARK 500 3 THR B 134 99.09 -59.90 REMARK 500 4 SER A 9 98.12 -62.64 REMARK 500 4 THR A 14 11.69 -165.11 REMARK 500 4 HIS A 72 105.96 -163.77 REMARK 500 4 ASP B 82 21.69 -78.94 REMARK 500 5 CYS A 15 -143.84 -169.73 REMARK 500 5 ASN A 16 -23.58 -142.63 REMARK 500 5 ASN A 30 -36.79 -32.61 REMARK 500 5 MET A 65 -159.50 -74.98 REMARK 500 5 HIS A 72 28.84 -150.08 REMARK 500 6 SER A 9 79.96 -66.40 REMARK 500 6 MET A 65 -112.43 -103.69 REMARK 500 6 ASP B 82 36.63 -74.24 REMARK 500 6 CYS B 85 -120.83 -80.85 REMARK 500 6 LEU B 138 55.87 -157.29 REMARK 500 7 THR A 14 -18.28 -160.12 REMARK 500 7 MET A 65 -131.75 -96.01 REMARK 500 7 HIS A 72 -154.77 -142.91 REMARK 500 7 ASP B 82 38.94 -71.16 REMARK 500 7 LYS B 111 18.86 82.66 REMARK 500 7 THR B 134 98.69 -57.37 REMARK 500 8 VAL A 10 104.45 -57.61 REMARK 500 8 THR A 14 -19.40 -164.06 REMARK 500 8 CYS A 15 -111.85 -142.19 REMARK 500 8 SER A 17 4.37 -152.90 REMARK 500 8 ASN A 30 -25.17 70.01 REMARK 500 8 MET A 65 -110.82 -90.29 REMARK 500 8 THR B 84 -10.13 -149.44 REMARK 500 8 LEU B 138 61.89 -150.87 REMARK 500 REMARK 500 THIS ENTRY HAS 124 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 14 CYS A 15 3 -141.60 REMARK 500 CYS A 15 ASN A 16 4 -130.86 REMARK 500 MET A 65 GLY A 66 4 -129.30 REMARK 500 THR A 14 CYS A 15 5 -149.02 REMARK 500 THR B 84 CYS B 85 5 -140.75 REMARK 500 LEU B 138 GLY B 139 11 148.69 REMARK 500 TYR B 104 ASP B 105 13 138.80 REMARK 500 MET B 83 THR B 84 16 145.39 REMARK 500 ILE B 115 GLU B 116 20 143.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 13 TYR B 104 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 142 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CIRMMP27 RELATED DB: TARGETDB REMARK 900 METALLOCHAPERONE HAH1 REMARK 900 RELATED ID: 6266 RELATED DB: BMRB REMARK 900 CU(I)-HAH1 REMARK 900 RELATED ID: 1TL4 RELATED DB: PDB REMARK 900 CU(I)-HAH1 REMARK 900 RELATED ID: 1KVJ RELATED DB: PDB REMARK 900 CU(I)-MNK1 REMARK 900 RELATED ID: 3CJK RELATED DB: PDB REMARK 900 HAH1-CD(II)-MNK1 DBREF 2K1R A 1 73 UNP Q04656 ATP7A_HUMAN 5 77 DBREF 2K1R B 74 141 UNP O00244 ATOX1_HUMAN 1 68 SEQRES 1 A 73 MET GLY VAL ASN SER VAL THR ILE SER VAL GLU GLY MET SEQRES 2 A 73 THR CYS ASN SER CYS VAL TRP THR ILE GLU GLN GLN ILE SEQRES 3 A 73 GLY LYS VAL ASN GLY VAL HIS HIS ILE LYS VAL SER LEU SEQRES 4 A 73 GLU GLU LYS ASN ALA THR ILE ILE TYR ASP PRO LYS LEU SEQRES 5 A 73 GLN THR PRO LYS THR LEU GLN GLU ALA ILE ASP ASP MET SEQRES 6 A 73 GLY PHE ASP ALA VAL ILE HIS ASN SEQRES 1 B 68 MET PRO LYS HIS GLU PHE SER VAL ASP MET THR CYS GLY SEQRES 2 B 68 GLY CYS ALA GLU ALA VAL SER ARG VAL LEU ASN LYS LEU SEQRES 3 B 68 GLY GLY VAL LYS TYR ASP ILE ASP LEU PRO ASN LYS LYS SEQRES 4 B 68 VAL CYS ILE GLU SER GLU HIS SER MET ASP THR LEU LEU SEQRES 5 B 68 ALA THR LEU LYS LYS THR GLY LYS THR VAL SER TYR LEU SEQRES 6 B 68 GLY LEU GLU HET CU A 142 1 HETNAM CU COPPER (II) ION FORMUL 3 CU CU 2+ HELIX 1 1 SER A 17 GLY A 27 1 11 HELIX 2 2 THR A 54 ASP A 63 1 10 HELIX 3 3 CYS B 85 GLY B 100 1 16 HELIX 4 4 SER B 120 LYS B 129 1 10 HELIX 5 5 LYS B 130 GLY B 132 5 3 SHEET 1 A 4 VAL A 32 SER A 38 0 SHEET 2 A 4 ASN A 43 TYR A 48 -1 O ASN A 43 N SER A 38 SHEET 3 A 4 ASN A 4 VAL A 10 -1 N ILE A 8 O ALA A 44 SHEET 4 A 4 ALA A 69 ILE A 71 -1 O VAL A 70 N SER A 9 SHEET 1 B 4 LYS B 103 ASP B 107 0 SHEET 2 B 4 LYS B 112 GLU B 116 -1 O LYS B 112 N ASP B 107 SHEET 3 B 4 HIS B 77 VAL B 81 -1 N PHE B 79 O VAL B 113 SHEET 4 B 4 VAL B 135 LEU B 140 -1 O SER B 136 N SER B 80 SSBOND 1 CYS A 15 CYS B 85 1555 1555 1.97 SITE 1 AC1 4 MET A 13 CYS A 15 ASN A 16 SER A 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1