HEADER METAL BINDING PROTEIN 17-MAR-08 2K1W TITLE NMR SOLUTION STRUCTURE OF M-CRYSTALLIN IN CALCIUM LOADED FORM(HOLO). CAVEAT 2K1W CHIRALITY ERROR AT CD CENTER OF PRO75A IN MODELS 2,4,8,11 CAVEAT 2 2K1W AND 19. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA/GAMA CRYSTALLIN FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 37-120; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA ACETIVORANS; SOURCE 3 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 4 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 5 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS CRYSTALLIN, EYE LENS, ARCHAEA, PROTEIN, EVOLUTION, METAL BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.BARNWAL,M.JOBBY,K.DEVI,Y.SHARMA,K.CHARY REVDAT 3 16-MAR-22 2K1W 1 REMARK SEQADV REVDAT 2 10-MAR-09 2K1W 1 JRNL REVDAT 1 27-JAN-09 2K1W 0 JRNL AUTH R.P.BARNWAL,M.K.JOBBY,K.M.DEVI,Y.SHARMA,K.V.CHARY JRNL TITL SOLUTION STRUCTURE AND CALCIUM-BINDING PROPERTIES OF JRNL TITL 2 M-CRYSTALLIN, A PRIMORDIAL BETAGAMMA-CRYSTALLIN FROM JRNL TITL 3 ARCHAEA. JRNL REF J.MOL.BIOL. V. 386 675 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19138688 JRNL DOI 10.1016/J.JMB.2008.12.058 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, CYANA 3.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000100571. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0-1.2 MM [U-99% 13C; U-99% REMARK 210 15N] M CRYSTALLIN, 10 MM TRIS, 5- REMARK 210 7 MM CALCIUM, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H COSY; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HNCO; (3,2)D HNHA; (3, REMARK 210 2)D HNHB; 3D 1H-13C NOESY; 3D 1H- REMARK 210 15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING A COMBINATION OF NOE, REMARK 210 DIHEDRAL CONSTRAINS AND 3J(HNHA) COUPLING DATA. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 PRO A 75 CG PRO A 75 CD 0.291 REMARK 500 2 PRO A 75 CG PRO A 75 CD 0.304 REMARK 500 3 PRO A 75 CG PRO A 75 CD 0.291 REMARK 500 4 PRO A 75 CG PRO A 75 CD 0.302 REMARK 500 5 PRO A 75 CG PRO A 75 CD 0.290 REMARK 500 6 PRO A 75 CG PRO A 75 CD 0.291 REMARK 500 7 PRO A 75 CG PRO A 75 CD 0.291 REMARK 500 8 PRO A 75 CG PRO A 75 CD 0.302 REMARK 500 9 PRO A 75 CG PRO A 75 CD 0.293 REMARK 500 10 PRO A 75 CG PRO A 75 CD 0.287 REMARK 500 11 PRO A 75 CG PRO A 75 CD 0.300 REMARK 500 12 PRO A 75 CG PRO A 75 CD 0.285 REMARK 500 13 PRO A 75 CG PRO A 75 CD 0.296 REMARK 500 14 PRO A 75 CG PRO A 75 CD 0.296 REMARK 500 15 PRO A 75 CG PRO A 75 CD 0.289 REMARK 500 16 PRO A 75 CG PRO A 75 CD 0.309 REMARK 500 17 PRO A 75 CG PRO A 75 CD 0.290 REMARK 500 18 PRO A 75 CG PRO A 75 CD 0.285 REMARK 500 19 PRO A 75 CG PRO A 75 CD 0.300 REMARK 500 20 PRO A 75 CG PRO A 75 CD 0.297 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 PRO A 75 N - CD - CG ANGL. DEV. = -15.1 DEGREES REMARK 500 2 PRO A 75 N - CD - CG ANGL. DEV. = -16.0 DEGREES REMARK 500 3 PRO A 75 N - CD - CG ANGL. DEV. = -15.2 DEGREES REMARK 500 4 PRO A 75 N - CD - CG ANGL. DEV. = -15.8 DEGREES REMARK 500 5 PRO A 75 N - CD - CG ANGL. DEV. = -15.1 DEGREES REMARK 500 6 PRO A 75 N - CD - CG ANGL. DEV. = -15.2 DEGREES REMARK 500 7 PRO A 75 N - CD - CG ANGL. DEV. = -15.6 DEGREES REMARK 500 8 PRO A 75 N - CD - CG ANGL. DEV. = -15.9 DEGREES REMARK 500 9 PRO A 75 N - CD - CG ANGL. DEV. = -15.6 DEGREES REMARK 500 10 PRO A 75 N - CD - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 11 PRO A 75 N - CD - CG ANGL. DEV. = -15.8 DEGREES REMARK 500 12 PRO A 75 N - CD - CG ANGL. DEV. = -14.4 DEGREES REMARK 500 13 PRO A 75 N - CD - CG ANGL. DEV. = -15.5 DEGREES REMARK 500 14 PRO A 75 N - CD - CG ANGL. DEV. = -15.5 DEGREES REMARK 500 15 PRO A 75 N - CD - CG ANGL. DEV. = -14.9 DEGREES REMARK 500 16 PRO A 75 N - CD - CG ANGL. DEV. = -14.9 DEGREES REMARK 500 17 PRO A 75 N - CD - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 18 PRO A 75 N - CD - CG ANGL. DEV. = -13.7 DEGREES REMARK 500 19 PRO A 75 N - CD - CG ANGL. DEV. = -15.7 DEGREES REMARK 500 20 PRO A 75 N - CD - CG ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 11 -170.05 -176.45 REMARK 500 1 PHE A 14 42.69 -88.87 REMARK 500 1 ASP A 24 -35.82 -176.17 REMARK 500 1 SER A 43 98.66 -166.71 REMARK 500 1 TYR A 51 -169.87 178.58 REMARK 500 1 ILE A 52 177.36 -58.40 REMARK 500 1 TYR A 54 39.97 -159.39 REMARK 500 1 SER A 67 66.20 -158.51 REMARK 500 1 VAL A 69 19.53 -153.41 REMARK 500 1 GLU A 70 28.68 -168.06 REMARK 500 1 SER A 71 20.23 -152.58 REMARK 500 1 ILE A 74 67.47 -116.67 REMARK 500 1 ASP A 76 125.61 -179.79 REMARK 500 2 ALA A 3 47.11 -107.61 REMARK 500 2 ALA A 4 42.06 -149.98 REMARK 500 2 HIS A 11 -177.62 -174.18 REMARK 500 2 ASP A 24 42.10 -178.61 REMARK 500 2 LEU A 32 58.08 -177.11 REMARK 500 2 ASN A 33 130.88 66.56 REMARK 500 2 SER A 43 99.55 -166.24 REMARK 500 2 TYR A 51 -174.35 -179.68 REMARK 500 2 SER A 67 45.15 -160.62 REMARK 500 2 VAL A 69 21.88 -157.78 REMARK 500 2 GLU A 70 31.40 -174.86 REMARK 500 2 SER A 71 21.55 -155.26 REMARK 500 2 ILE A 74 64.84 -118.23 REMARK 500 2 PRO A 75 -62.01 -90.97 REMARK 500 2 ASN A 77 39.19 -90.88 REMARK 500 3 ALA A 3 79.45 -107.32 REMARK 500 3 HIS A 11 -171.00 -176.57 REMARK 500 3 PHE A 14 43.09 -88.57 REMARK 500 3 THR A 22 -169.73 -111.74 REMARK 500 3 ASP A 24 -46.02 -164.78 REMARK 500 3 LEU A 32 -168.83 -173.38 REMARK 500 3 SER A 43 98.81 -166.54 REMARK 500 3 TYR A 51 -171.34 176.88 REMARK 500 3 ILE A 52 170.28 -58.84 REMARK 500 3 TYR A 54 55.92 -118.65 REMARK 500 3 SER A 67 82.68 -156.06 REMARK 500 3 VAL A 69 27.34 -166.12 REMARK 500 3 GLU A 70 -26.99 175.85 REMARK 500 3 ASP A 76 126.91 -177.89 REMARK 500 4 ALA A 4 55.33 -155.38 REMARK 500 4 HIS A 11 -169.88 -176.49 REMARK 500 4 PHE A 14 42.44 -88.84 REMARK 500 4 ASP A 24 -50.52 -160.25 REMARK 500 4 LEU A 32 -169.16 -176.41 REMARK 500 4 ILE A 36 108.28 -50.18 REMARK 500 4 SER A 43 98.81 -166.89 REMARK 500 4 TYR A 51 -176.87 178.93 REMARK 500 REMARK 500 THIS ENTRY HAS 307 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 136 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6904 RELATED DB: BMRB REMARK 900 RELATED ID: 2JO2 RELATED DB: PDB REMARK 900 RELATED ID: 2K1X RELATED DB: PDB DBREF 2K1W A 2 85 UNP Q8TMX3 Q8TMX3_METAC 37 120 SEQADV 2K1W MET A 1 UNP Q8TMX3 EXPRESSION TAG SEQRES 1 A 85 MET ASN ALA ALA GLU VAL ILE VAL TYR GLU HIS VAL ASN SEQRES 2 A 85 PHE GLY GLY LYS SER PHE ASP ALA THR SER ASP GLN PRO SEQRES 3 A 85 GLY ALA GLY ASP ASN LEU ASN ASP LYS ILE SER SER ILE SEQRES 4 A 85 LYS VAL LYS SER GLY THR TRP ARG PHE TYR GLU TYR ILE SEQRES 5 A 85 ASN TYR GLY GLY ARG TYR TRP ASP LEU GLY PRO GLY GLU SEQRES 6 A 85 TYR SER SER VAL GLU SER ALA GLY ILE PRO ASP ASN SER SEQRES 7 A 85 ILE SER SER PHE ARG GLN ILE HET CA A 126 1 HET CA A 136 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) HELIX 1 1 VAL A 12 GLY A 16 5 5 SHEET 1 A 4 SER A 18 ALA A 21 0 SHEET 2 A 4 VAL A 6 TYR A 9 -1 N VAL A 8 O PHE A 19 SHEET 3 A 4 ILE A 39 VAL A 41 -1 O LYS A 40 N ILE A 7 SHEET 4 A 4 GLY A 64 TYR A 66 -1 O TYR A 66 N ILE A 39 SHEET 1 B 3 TRP A 59 LEU A 61 0 SHEET 2 B 3 THR A 45 TYR A 49 -1 N PHE A 48 O TRP A 59 SHEET 3 B 3 SER A 81 ILE A 85 -1 O SER A 81 N TYR A 49 SITE 1 AC1 4 GLU A 10 LYS A 35 SER A 37 ASN A 77 SITE 1 AC2 6 ASP A 34 GLU A 50 ASP A 76 ASN A 77 SITE 2 AC2 6 SER A 78 SER A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1