HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 01-APR-08 2K2E TITLE SOLUTION NMR STRUCTURE OF BORDETELLA PERTUSSIS PROTEIN BP2786, A TITLE 2 MTH938-LIKE DOMAIN. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 BER31 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN BP2786; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PERTUSSIS TOHAMA I; SOURCE 3 ORGANISM_TAXID: 257313; SOURCE 4 STRAIN: TOHAMA I / NCTC 13251; SOURCE 5 ATCC: BAA-589; SOURCE 6 GENE: BP2786; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS MTH938-LIKE FOLD, COG03737, DUF498, STRUCTURAL GENOMICS, UNKNOWN KEYWDS 2 FUNCTION, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.R.CORT,C.K.HO,C.NWOSU,M.MAGLAQUI,R.XIAO,J.LIU,M.C.BARAN,G.SWAPNA, AUTHOR 2 T.B.ACTON,B.ROST,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 3 16-MAR-22 2K2E 1 REMARK SEQADV REVDAT 2 24-FEB-09 2K2E 1 VERSN REVDAT 1 22-APR-08 2K2E 0 JRNL AUTH J.R.CORT,M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF BORDETELLA PERTUSSIS PROTEIN JRNL TITL 2 BP2786, A MTH938-LIKE DOMAIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 97, AUTOSTRUCTURE, PSVS, CNS, X-PLOR NIH REMARK 3 AUTHORS : ACCELRYS SOFTWARE INC. (FELIX), HUANG, TEJERO, REMARK 3 POWERS AND MONTELIONE (AUTOSTRUCTURE), REMARK 3 BHATTACHARYA AND MONTELIONE (PSVS), BRUNGER, ADAMS, REMARK 3 CLORE, GROS, NILGES AND READ (CNS), SCHWIETERS, REMARK 3 KUSZEWSKI, TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K2E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000100589. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 135 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 100 MM SODIUM CHLORIDE, 20 MM REMARK 210 MES, 10 MM DTT, 0.02 % SODIUM REMARK 210 AZIDE, 5 MM CALCIUM CHLORIDE, 95% REMARK 210 H2O/5% D2O; 100 MM SODIUM REMARK 210 CHLORIDE, 20 MM MES, 10 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 5 MM REMARK 210 CALCIUM CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY; 3D 1H-15N REMARK 210 NOESY; 4D 1H-13C-13C-1H HMQC- REMARK 210 NOESY; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 2D 1H-15N HSQC; 2D 1H- REMARK 210 13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 97, SPARKY, AUTOSTRUCTURE, REMARK 210 PSVS, CNS, X-PLOR NIH REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 65 HE ARG A 84 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 17 -79.82 -78.43 REMARK 500 1 PRO A 49 1.88 -66.72 REMARK 500 1 LEU A 63 -75.83 -70.99 REMARK 500 1 GLU A 76 82.12 63.77 REMARK 500 1 ARG A 139 97.83 -63.52 REMARK 500 1 SER A 150 -171.19 -174.09 REMARK 500 2 HIS A 4 11.35 -144.75 REMARK 500 2 ALA A 8 -61.53 73.87 REMARK 500 2 ASN A 12 87.88 61.62 REMARK 500 2 GLN A 26 -0.02 73.30 REMARK 500 2 GLU A 38 21.31 -152.32 REMARK 500 2 ALA A 72 72.92 46.55 REMARK 500 2 PRO A 77 86.92 -53.80 REMARK 500 2 GLN A 100 96.73 -66.17 REMARK 500 2 ASP A 149 -176.37 68.47 REMARK 500 2 SER A 150 -24.64 -159.46 REMARK 500 2 HIS A 157 -90.31 -120.70 REMARK 500 3 ASN A 25 -77.49 64.63 REMARK 500 3 PRO A 45 33.93 -71.56 REMARK 500 3 ARG A 68 -68.86 72.75 REMARK 500 3 ASP A 69 -57.65 -168.52 REMARK 500 3 PRO A 85 -157.41 -86.47 REMARK 500 4 ALA A 10 48.46 -77.18 REMARK 500 4 ARG A 68 -88.63 -129.58 REMARK 500 4 ASP A 69 99.52 -175.88 REMARK 500 4 PRO A 70 98.94 -61.37 REMARK 500 4 ALA A 81 -66.14 -103.60 REMARK 500 4 ALA A 83 -17.58 71.21 REMARK 500 4 ASN A 87 71.40 -110.73 REMARK 500 4 ARG A 98 -75.14 -73.18 REMARK 500 5 ASP A 6 90.67 59.18 REMARK 500 5 PRO A 7 23.35 -74.67 REMARK 500 5 GLN A 26 -6.08 73.73 REMARK 500 5 VAL A 67 117.65 74.17 REMARK 500 5 PRO A 77 75.57 -14.06 REMARK 500 5 ALA A 83 -167.53 -168.66 REMARK 500 6 PRO A 7 33.71 -76.42 REMARK 500 6 ALA A 8 113.70 68.94 REMARK 500 6 THR A 9 -153.59 -90.56 REMARK 500 6 LEU A 74 -165.87 -127.73 REMARK 500 6 ALA A 86 30.28 -86.86 REMARK 500 6 GLN A 100 99.56 -64.90 REMARK 500 6 ASP A 147 108.23 64.59 REMARK 500 7 ASP A 19 86.46 59.92 REMARK 500 7 GLN A 26 -8.11 71.26 REMARK 500 7 PRO A 45 39.87 -76.58 REMARK 500 7 VAL A 67 94.23 -67.55 REMARK 500 7 PRO A 70 30.67 -96.12 REMARK 500 7 LEU A 74 -42.41 -167.77 REMARK 500 7 GLU A 76 106.73 65.88 REMARK 500 REMARK 500 THIS ENTRY HAS 169 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BER31 RELATED DB: TARGETDB REMARK 900 RELATED ID: 2GM2 RELATED DB: PDB REMARK 900 SIMILAR PROTEIN / HOMOLOGUE REMARK 900 RELATED ID: 2FVT RELATED DB: PDB REMARK 900 SIMILAR PROTEIN / HOMOLOGUE REMARK 900 RELATED ID: 3CPK RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THIS PROTEIN DBREF 2K2E A 1 150 UNP Q7VV99 Q7VV99_BORPE 1 150 SEQADV 2K2E LEU A 151 UNP Q7VV99 EXPRESSION TAG SEQADV 2K2E GLU A 152 UNP Q7VV99 EXPRESSION TAG SEQADV 2K2E HIS A 153 UNP Q7VV99 EXPRESSION TAG SEQADV 2K2E HIS A 154 UNP Q7VV99 EXPRESSION TAG SEQADV 2K2E HIS A 155 UNP Q7VV99 EXPRESSION TAG SEQADV 2K2E HIS A 156 UNP Q7VV99 EXPRESSION TAG SEQADV 2K2E HIS A 157 UNP Q7VV99 EXPRESSION TAG SEQADV 2K2E HIS A 158 UNP Q7VV99 EXPRESSION TAG SEQRES 1 A 158 MET LYS LEU HIS THR ASP PRO ALA THR ALA LEU ASN THR SEQRES 2 A 158 VAL THR ALA TYR GLY ASP GLY TYR ILE GLU VAL ASN GLN SEQRES 3 A 158 VAL ARG PHE SER HIS ALA ILE ALA PHE ALA PRO GLU GLY SEQRES 4 A 158 PRO VAL ALA SER TRP PRO VAL GLN ARG PRO ALA ASP ILE SEQRES 5 A 158 THR ALA SER LEU LEU GLN GLN ALA ALA GLY LEU ALA GLU SEQRES 6 A 158 VAL VAL ARG ASP PRO LEU ALA PHE LEU ASP GLU PRO GLU SEQRES 7 A 158 ALA GLY ALA GLY ALA ARG PRO ALA ASN ALA PRO GLU VAL SEQRES 8 A 158 LEU LEU VAL GLY THR GLY ARG ARG GLN HIS LEU LEU GLY SEQRES 9 A 158 PRO GLU GLN VAL ARG PRO LEU LEU ALA MET GLY VAL GLY SEQRES 10 A 158 VAL GLU ALA MET ASP THR GLN ALA ALA ALA ARG THR TYR SEQRES 11 A 158 ASN ILE LEU MET ALA GLU GLY ARG ARG VAL VAL VAL ALA SEQRES 12 A 158 LEU LEU PRO ASP GLY ASP SER LEU GLU HIS HIS HIS HIS SEQRES 13 A 158 HIS HIS HELIX 1 1 THR A 53 ALA A 61 1 9 HELIX 2 2 GLY A 104 ALA A 113 1 10 HELIX 3 3 ASP A 122 GLY A 137 1 16 HELIX 4 4 SER A 150 HIS A 155 5 6 SHEET 1 A 3 VAL A 14 ALA A 16 0 SHEET 2 A 3 ILE A 22 VAL A 24 -1 O GLU A 23 N ALA A 16 SHEET 3 A 3 VAL A 27 PHE A 29 -1 O VAL A 27 N VAL A 24 SHEET 1 B 5 ALA A 42 SER A 43 0 SHEET 2 B 5 ILE A 33 PHE A 35 -1 N ALA A 34 O ALA A 42 SHEET 3 B 5 VAL A 140 LEU A 144 -1 O LEU A 144 N ILE A 33 SHEET 4 B 5 VAL A 91 GLY A 95 1 N LEU A 93 O ALA A 143 SHEET 5 B 5 GLY A 117 MET A 121 1 O GLU A 119 N LEU A 92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1