HEADER TRANSFERASE 04-APR-08 2K2N TITLE SOLUTION STRUCTURE OF A CYANOBACTERIAL PHYTOCHROME GAF DOMAIN IN THE TITLE 2 RED LIGHT-ABSORBING GROUND STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GAF DOMAIN (UNP RESIDUES 31-200); COMPND 5 SYNONYM: SYB-CPH1(GAF); COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS SP.; SOURCE 3 ORGANISM_TAXID: 316278; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PGEX-4T KEYWDS PHYTOCHROME, GAF DOMAIN, PHYCOCYANOBILIN, PCB, BACTERIOPHYTOCHROME, KEYWDS 2 CYANOBACTERIAL PHYTOCHROME, KINASE, PHOSPHOPROTEIN, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.C.CORNILESCU,G.CORNILESCU,A.T.ULIJASZ,R.D.VIERSTRA,J.L.MARKLEY REVDAT 6 16-MAR-22 2K2N 1 REMARK SEQADV LINK REVDAT 5 29-SEP-09 2K2N 1 ATOM REVDAT 4 09-JUN-09 2K2N 1 REVDAT REVDAT 3 24-FEB-09 2K2N 1 VERSN REVDAT 2 23-DEC-08 2K2N 1 JRNL REVDAT 1 23-SEP-08 2K2N 0 JRNL AUTH G.CORNILESCU,A.T.ULIJASZ,C.C.CORNILESCU,J.L.MARKLEY, JRNL AUTH 2 R.D.VIERSTRA JRNL TITL SOLUTION STRUCTURE OF A CYANOBACTERIAL PHYTOCHROME GAF JRNL TITL 2 DOMAIN IN THE RED-LIGHT-ABSORBING GROUND STATE. JRNL REF J.MOL.BIOL. V. 383 403 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18762196 JRNL DOI 10.1016/J.JMB.2008.08.034 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K2N COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000100598. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 306 REMARK 210 PH : 8.5; 8.5 REMARK 210 IONIC STRENGTH : 0.01; 0.01 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.7 MM [U-13C; U-15N] SYB REMARK 210 -CPH1(GAF), 1.7 MM REMARK 210 PHYCOCYANOBILIN, 10 MM [U-2H] REMARK 210 TRIS-DCL, 0.03 % NAN3, 93% H2O/7% REMARK 210 D2O; 2 MM SYB-CPH1(GAF), 2 MM REMARK 210 [U-15N] PHYCOCYANOBILIN, 10 MM REMARK 210 [U-2H] TRIS-DCL, 0.03 % NAN3, 93% REMARK 210 H2O/7% D2O; 1 MM SYB-CPH1(GAF), REMARK 210 1 MM [U-13C] PHYCOCYANOBILIN, 10 REMARK 210 MM [U-2H] TRIS-DCL, 0.03 % NAN3, REMARK 210 100% D2O; 1 MM [U-13C; U-15N] REMARK 210 SYB-CPH1(GAF), 1 MM REMARK 210 PHYCOCYANOBILIN, 10 MM [U-2H] REMARK 210 TRIS-DCL, 0.03 % NAN3, 93% H2O/7% REMARK 210 D2O; 1 MM [U-13C; U-15N] SYB- REMARK 210 CPH1(GAF), 1 MM PHYCOCYANOBILIN, REMARK 210 10 MM [U-2H] TRIS-DCL, 0.03 % REMARK 210 NAN3, 93% H2O/7% D2O; 0.5 MM SYB- REMARK 210 CPH1(GAF), 0.5 MM [U-13C] REMARK 210 PHYCOCYANOBILIN, 10 MM [U-2H] REMARK 210 TRIS-DCL, 0.03 % NAN3, 93% H2O/7% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D C(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D HNCO REMARK 210 ANTIPHASE; 3D HCA(CO)N ANTIPHASE; REMARK 210 J MODULATED 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMRJ, NMRPIPE, NMRDRAW, PIPP, REMARK 210 TALOS, X-PLOR NIH, MOLMOL, REMARK 210 PROCHECKNMR REMARK 210 METHOD USED : TORSION ANGLE MOLECULAR REMARK 210 DYNAMICS, INTERNAL VARIABLE REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 184 H ALA A 188 1.48 REMARK 500 O ARG A 43 H GLY A 47 1.49 REMARK 500 O ASP A 57 H GLY A 60 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 75 154.21 -48.24 REMARK 500 1 PRO A 88 -155.00 -51.47 REMARK 500 1 VAL A 100 105.44 -165.71 REMARK 500 1 GLN A 109 72.07 43.89 REMARK 500 1 SER A 114 25.74 -72.87 REMARK 500 1 SER A 118 -164.24 39.93 REMARK 500 1 ARG A 133 68.58 17.83 REMARK 500 1 PRO A 155 150.21 -48.14 REMARK 500 2 GLU A 72 43.37 -71.78 REMARK 500 2 PRO A 88 -164.86 -73.06 REMARK 500 2 GLN A 99 75.31 42.58 REMARK 500 2 VAL A 100 115.97 175.79 REMARK 500 2 GLN A 109 70.74 44.51 REMARK 500 2 TRP A 119 -99.29 -86.45 REMARK 500 2 ARG A 124 -178.10 76.32 REMARK 500 2 PRO A 126 -131.78 -50.50 REMARK 500 2 ARG A 133 71.61 60.13 REMARK 500 2 ARG A 174 104.17 -39.33 REMARK 500 2 PRO A 175 167.44 -48.81 REMARK 500 3 GLU A 72 38.96 -78.25 REMARK 500 3 PRO A 88 -169.48 -70.19 REMARK 500 3 GLN A 99 77.40 38.51 REMARK 500 3 VAL A 100 114.48 179.32 REMARK 500 3 VAL A 102 145.72 -170.32 REMARK 500 3 GLN A 109 69.45 36.60 REMARK 500 3 SER A 114 -77.48 38.48 REMARK 500 3 GLN A 115 107.49 -54.23 REMARK 500 3 PRO A 126 153.94 -47.59 REMARK 500 3 ASP A 136 152.74 -42.43 REMARK 500 3 ARG A 174 129.66 -172.31 REMARK 500 4 GLN A 99 81.66 42.43 REMARK 500 4 VAL A 100 114.48 174.41 REMARK 500 4 VAL A 102 146.68 -170.76 REMARK 500 4 ALA A 108 -8.07 -59.47 REMARK 500 4 SER A 118 176.20 50.39 REMARK 500 4 ARG A 124 83.28 51.45 REMARK 500 4 GLN A 132 153.74 179.50 REMARK 500 4 PRO A 173 -98.82 -74.83 REMARK 500 4 ARG A 174 144.94 56.38 REMARK 500 5 ASP A 49 -39.82 -38.03 REMARK 500 5 GLU A 72 46.82 -169.22 REMARK 500 5 PRO A 88 -159.83 -73.89 REMARK 500 5 GLN A 99 74.18 39.55 REMARK 500 5 VAL A 100 121.22 174.27 REMARK 500 5 ARG A 101 147.65 -171.04 REMARK 500 5 GLN A 109 72.01 36.34 REMARK 500 5 GLU A 117 134.83 -171.51 REMARK 500 5 SER A 118 -23.95 -165.43 REMARK 500 5 LEU A 121 93.64 47.39 REMARK 500 5 ARG A 124 -142.76 80.54 REMARK 500 REMARK 500 THIS ENTRY HAS 239 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYC A 203 DBREF 2K2N A 31 200 UNP Q2JIZ5 Q2JIZ5_SYNJB 31 200 SEQADV 2K2N SER A 201 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2K2N LEU A 202 UNP Q2JIZ5 EXPRESSION TAG SEQRES 1 A 172 LEU ASP GLN ILE LEU ARG ALA THR VAL GLU GLU VAL ARG SEQRES 2 A 172 ALA PHE LEU GLY THR ASP ARG VAL LYS VAL TYR ARG PHE SEQRES 3 A 172 ASP PRO GLU GLY HIS GLY THR VAL VAL ALA GLU ALA ARG SEQRES 4 A 172 GLY GLY GLU ARG LEU PRO SER LEU LEU GLY LEU THR PHE SEQRES 5 A 172 PRO ALA GLY ASP ILE PRO GLU GLU ALA ARG ARG LEU PHE SEQRES 6 A 172 ARG LEU ALA GLN VAL ARG VAL ILE VAL ASP VAL GLU ALA SEQRES 7 A 172 GLN SER ARG SER ILE SER GLN PRO GLU SER TRP GLY LEU SEQRES 8 A 172 SER ALA ARG VAL PRO LEU GLY GLU PRO LEU GLN ARG PRO SEQRES 9 A 172 VAL ASP PRO CYS HIS VAL HIS TYR LEU LYS SER MET GLY SEQRES 10 A 172 VAL ALA SER SER LEU VAL VAL PRO LEU MET HIS HIS GLN SEQRES 11 A 172 GLU LEU TRP GLY LEU LEU VAL SER HIS HIS ALA GLU PRO SEQRES 12 A 172 ARG PRO TYR SER GLN GLU GLU LEU GLN VAL VAL GLN LEU SEQRES 13 A 172 LEU ALA ASP GLN VAL SER ILE ALA ILE ALA GLN ALA GLU SEQRES 14 A 172 LEU SER LEU HET CYC A 203 81 HETNAM CYC PHYCOCYANOBILIN FORMUL 2 CYC C33 H40 N4 O6 HELIX 1 1 LEU A 31 GLY A 47 1 17 HELIX 2 2 GLU A 89 ALA A 98 1 10 HELIX 3 3 ASP A 105 GLN A 109 5 5 HELIX 4 4 ASP A 136 SER A 145 1 10 HELIX 5 5 SER A 177 LEU A 202 1 26 SHEET 1 A 5 THR A 63 ARG A 69 0 SHEET 2 A 5 ARG A 50 ARG A 55 -1 N VAL A 53 O ALA A 66 SHEET 3 A 5 GLY A 164 HIS A 170 -1 O LEU A 165 N TYR A 54 SHEET 4 A 5 SER A 150 VAL A 153 -1 N LEU A 152 O SER A 168 SHEET 5 A 5 ARG A 101 VAL A 102 -1 N ARG A 101 O VAL A 153 LINK SG CYS A 138 CAC CYC A 203 1555 1555 1.85 SITE 1 AC1 14 LYS A 52 TYR A 54 PHE A 82 ASP A 86 SITE 2 AC1 14 PRO A 88 ALA A 91 ARG A 101 ILE A 103 SITE 3 AC1 14 VAL A 135 ASP A 136 CYS A 138 HIS A 139 SITE 4 AC1 14 VAL A 153 VAL A 167 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1