HEADER CELL ADHESION 11-APR-08 2K2T TITLE EPIDERMAL GROWTH FACTOR-LIKE DOMAIN 2 FROM TOXOPLASMA GONDII MICRONEME TITLE 2 PROTEIN 6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICRONEMAL PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EGF2-LIKE DOMAIN 2 (UNP RESIDUES 87-147); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 GENE: MIC6; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET32XA/LIC KEYWDS EGF, MIC6, TOXOPLASMA GONDII, APICOMPLEXA, PROTOZOA, CELL ADHESION, KEYWDS 2 CYTOPLASMIC VESICLE, EGF-LIKE DOMAIN, MEMBRANE, TRANSMEMBRANE, KEYWDS 3 VIRULENCE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.SAWMYNADEN,S.SAOUROS,J.MARCHANT,P.SIMPSON,S.MATTHEWS REVDAT 2 16-MAR-22 2K2T 1 REMARK REVDAT 1 24-FEB-09 2K2T 0 JRNL AUTH K.SAWMYNADEN,S.SAOUROS,N.FRIEDRICH,J.MARCHANT,P.SIMPSON, JRNL AUTH 2 B.BLEIJLEVENS,M.J.BLACKMAN,D.SOLDATI-FAVRE,S.MATTHEWS JRNL TITL STRUCTURAL INSIGHTS INTO MICRONEME PROTEIN ASSEMBLY REVEAL A JRNL TITL 2 NEW MODE OF EGF DOMAIN RECOGNITION. JRNL REF EMBO REP. V. 9 1149 2008 JRNL REFN ISSN 1469-221X JRNL PMID 18818666 JRNL DOI 10.1038/EMBOR.2008.179 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW, CNS REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000100604. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-98% 13C; U-98% 15N] REMARK 210 EPIDERMAL GROWTH FACTOR-LIKE REMARK 210 DOMAIN 2, 25 MM POTASSIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HCCH-TOCSY; 3D HBHA(CO)NH; REMARK 210 3D HC(CO)NH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 PHE A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 8 -72.05 -162.62 REMARK 500 1 ALA A 12 123.78 68.09 REMARK 500 1 ALA A 13 -56.67 69.57 REMARK 500 1 GLN A 58 -71.73 -177.79 REMARK 500 1 GLU A 59 -73.83 -138.72 REMARK 500 2 GLU A 9 -92.49 -81.74 REMARK 500 2 PRO A 18 -75.08 -78.85 REMARK 500 2 CYS A 19 24.05 -78.45 REMARK 500 2 ARG A 57 -75.80 -76.49 REMARK 500 2 GLU A 59 86.23 178.38 REMARK 500 3 LEU A 7 -177.64 62.33 REMARK 500 3 ALA A 12 -93.04 43.56 REMARK 500 4 LEU A 7 -87.53 -81.99 REMARK 500 4 SER A 8 -67.07 -147.11 REMARK 500 4 PRO A 11 29.39 -78.00 REMARK 500 4 ALA A 12 -99.72 50.98 REMARK 500 4 ASN A 17 72.59 54.03 REMARK 500 4 ASN A 31 46.83 -79.82 REMARK 500 4 SER A 32 -41.43 -162.90 REMARK 500 5 SER A 8 -72.52 -69.51 REMARK 500 5 GLU A 9 -88.92 -98.92 REMARK 500 5 ALA A 12 -87.44 43.65 REMARK 500 5 ASN A 17 73.29 55.95 REMARK 500 6 GLU A 9 -79.70 -93.71 REMARK 500 6 PRO A 11 -163.05 -76.78 REMARK 500 6 ALA A 12 -65.43 -103.89 REMARK 500 6 ASN A 17 73.04 62.29 REMARK 500 6 GLN A 58 -72.73 -165.77 REMARK 500 7 GLN A 6 -48.07 -177.59 REMARK 500 7 LEU A 7 -95.69 69.88 REMARK 500 7 SER A 8 -82.05 -154.51 REMARK 500 7 ASN A 17 76.37 57.50 REMARK 500 7 PRO A 18 -73.02 -73.23 REMARK 500 7 GLU A 59 67.29 -105.19 REMARK 500 7 SER A 60 -52.41 -127.03 REMARK 500 8 ALA A 12 121.19 66.90 REMARK 500 8 ALA A 13 -58.37 70.68 REMARK 500 8 ALA A 24 -63.61 -94.61 REMARK 500 8 GLN A 58 -65.45 -150.44 REMARK 500 8 GLU A 59 100.56 -174.96 REMARK 500 9 SER A 8 -62.52 72.11 REMARK 500 9 GLU A 9 -63.95 -132.44 REMARK 500 9 PRO A 11 29.04 -72.47 REMARK 500 9 ALA A 12 -96.01 43.63 REMARK 500 9 ASN A 17 84.54 55.79 REMARK 500 9 GLN A 58 89.59 -177.74 REMARK 500 9 SER A 60 161.09 68.53 REMARK 500 10 LEU A 7 167.26 69.53 REMARK 500 10 GLU A 9 -76.42 -142.12 REMARK 500 10 PRO A 11 20.39 -71.50 REMARK 500 REMARK 500 THIS ENTRY HAS 53 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15682 RELATED DB: BMRB REMARK 900 RELATED ID: 2K2S RELATED DB: PDB DBREF 2K2T A 1 61 UNP Q9XYH7 MIC6_TOXGO 87 147 SEQRES 1 A 61 MET ALA ASN PHE VAL GLN LEU SER GLU THR PRO ALA ALA SEQRES 2 A 61 CYS SER SER ASN PRO CYS GLY PRO GLU ALA ALA GLY THR SEQRES 3 A 61 CYS LYS GLU THR ASN SER GLY TYR ILE CYS ARG CYS ASN SEQRES 4 A 61 GLN GLY TYR ARG ILE SER LEU ASP GLY THR GLY ASN VAL SEQRES 5 A 61 THR CYS ILE VAL ARG GLN GLU SER GLY HELIX 1 1 ALA A 13 ASN A 17 5 5 SHEET 1 A 2 GLY A 25 LYS A 28 0 SHEET 2 A 2 ILE A 35 CYS A 38 -1 O ARG A 37 N THR A 26 SHEET 1 B 2 TYR A 42 LEU A 46 0 SHEET 2 B 2 VAL A 52 VAL A 56 -1 O ILE A 55 N ARG A 43 SSBOND 1 CYS A 14 CYS A 27 1555 1555 2.03 SSBOND 2 CYS A 19 CYS A 36 1555 1555 2.03 SSBOND 3 CYS A 38 CYS A 54 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1