HEADER TRANSCRIPTION 11-APR-08 2K2U TITLE NMR STRUCTURE OF THE COMPLEX BETWEEN TFB1 SUBUNIT OF TFIIH AND THE TITLE 2 ACTIVATION DOMAIN OF VP16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PH DOMAIN; COMPND 5 SYNONYM: RNA POLYMERASE II TRANSCRIPTION FACTOR B P73 SUBUNIT, RNA COMPND 6 POLYMERASE II TRANSCRIPTION FACTOR B 73 KDA SUBUNIT, GENERAL COMPND 7 TRANSCRIPTION AND DNA REPAIR FACTOR IIH SUBUNIT TFB1, TFIIH SUBUNIT COMPND 8 TFB1; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: ALPHA TRANS-INDUCING PROTEIN; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: TRANSCRIPTION ACTIVATION DOMAIN 2; COMPND 14 SYNONYM: VMW65, ICP25, VP16 PROTEIN, ALPHA-TIF; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 GENE: TFB1, YDR311W, D9740.3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: TOPP2; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-2T; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 1; SOURCE 11 ORGANISM_COMMON: HHV-1; SOURCE 12 STRAIN: STRAIN F; SOURCE 13 GENE: UL48; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: TOPP2; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-2T; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PLASMID KEYWDS VP16, TFIIH, TFB1, ACTIVATION, TRANSCRIPTION, PH DOMAIN, PROTEIN KEYWDS 2 STRUCTURE COMPLEX, DNA DAMAGE, DNA REPAIR, NUCLEUS, TRANSCRIPTION KEYWDS 3 REGULATION, DNA-BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.LANGLOIS,C.MAS,P.DI LELLO,P.M.MILLER JENKINS,J.LEGAULT, AUTHOR 2 J.G.OMICHINSKI REVDAT 3 20-OCT-21 2K2U 1 REMARK SEQADV REVDAT 2 24-FEB-09 2K2U 1 VERSN REVDAT 1 12-AUG-08 2K2U 0 JRNL AUTH C.LANGLOIS,C.MAS,P.DI LELLO,L.M.JENKINS,P.LEGAULT, JRNL AUTH 2 J.G.OMICHINSKI JRNL TITL NMR STRUCTURE OF THE COMPLEX BETWEEN THE TFB1 SUBUNIT OF JRNL TITL 2 TFIIH AND THE ACTIVATION DOMAIN OF VP16: STRUCTURAL JRNL TITL 3 SIMILARITIES BETWEEN VP16 AND P53. JRNL REF J.AM.CHEM.SOC. V. 130 10596 2008 JRNL REFN ISSN 0002-7863 JRNL PMID 18630911 JRNL DOI 10.1021/JA800975H REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE THREE-DIMENSIONAL STRUCTURES OF THE REMARK 3 COMPLEX TFB1/VP16 WERE DETERMINED USING A SET OF 1568 NOE- REMARK 3 DERIVED DISTANCE RESTRAINTS, 158 BACKBONE DIHEDRAL ANGLE (PHI REMARK 3 AND PSI)RESTRAINTS AND 36 DISTANCE RESTRAINTS FROM HYDROGEN REMARK 3 BOUNDS., THE THREE-DIMENSIONAL STRUCTURES OF THE COMPLEX TFB1/ REMARK 3 VP16 WERE DETERMINED USING A SET OF 1568 NOE-DERIVED DISTANCE REMARK 3 RESTRAINTS, 158 BACKBONE DIHEDRAL ANGLE (PHI AND PSI)RESTRAINTS REMARK 3 AND 36 DISTANCE RESTRAINTS FRON HYDROGEN BOUNDS. REMARK 4 REMARK 4 2K2U COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000100605. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20MM SODIUM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 15N] TFB1, 1.0 MM REMARK 210 VP16, 90% H2O, 10% D2O; 1.0 MM REMARK 210 [U-99% 13C; U-99% 15N] TFB1, 1.0 REMARK 210 MM VP16, 100% D2O; 1.0 MM [U-99% REMARK 210 15N] VP16, 1.0 MM TFB1, 90% H2O, REMARK 210 10% D2O; 1.0 MM [U-99% 13C; U-99% REMARK 210 15N] VP16, 1.0 MM TFB1, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; HNCO; HNCACB; REMARK 210 (HB)CBCA(CO)NNH; C(CO)NNH; 3D- REMARK 210 15N-EDITED-NOESY-HSQC; 3D-13C- REMARK 210 EDITED-HMQC-NOESY; 3D-15N-13C- REMARK 210 FILTRED-EDITED-NOESY; 2D 1H-13C REMARK 210 HSQC; 3D HNCO; 3D HNCACB; 3D-15N- REMARK 210 13C-EDITED-NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 5 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 13 126.01 -35.56 REMARK 500 1 ASN A 19 66.45 -106.98 REMARK 500 1 ALA A 25 105.62 46.23 REMARK 500 1 ASP A 33 44.98 177.79 REMARK 500 1 MET A 58 83.34 41.38 REMARK 500 1 LYS A 65 142.47 32.99 REMARK 500 1 ASP A 67 50.60 -104.57 REMARK 500 1 LYS A 71 155.64 -46.13 REMARK 500 1 ASP A 74 -46.64 -136.23 REMARK 500 1 ASN A 75 -32.88 175.18 REMARK 500 1 GLU A 79 92.85 38.87 REMARK 500 1 PRO A 82 170.70 -50.72 REMARK 500 1 ASN A 92 28.25 -141.70 REMARK 500 1 PHE B 457 99.15 -168.06 REMARK 500 1 SER B 462 112.44 -174.76 REMARK 500 1 TYR B 465 31.42 -98.53 REMARK 500 1 ASP B 481 75.81 49.20 REMARK 500 1 ILE B 485 31.17 -98.47 REMARK 500 1 GLU B 487 179.21 61.12 REMARK 500 1 TYR B 488 79.59 60.41 REMARK 500 2 SER A 13 123.52 -37.13 REMARK 500 2 ASN A 19 66.04 -106.14 REMARK 500 2 PRO A 24 -103.02 -76.29 REMARK 500 2 ALA A 25 141.71 172.69 REMARK 500 2 ASP A 33 45.41 178.20 REMARK 500 2 LYS A 57 -171.07 -64.03 REMARK 500 2 MET A 58 98.45 -174.74 REMARK 500 2 LYS A 65 -167.85 50.13 REMARK 500 2 ASP A 67 77.90 -50.42 REMARK 500 2 SER A 69 24.04 -151.36 REMARK 500 2 LYS A 70 97.51 68.00 REMARK 500 2 LYS A 71 178.59 54.29 REMARK 500 2 ASN A 75 -80.65 -149.59 REMARK 500 2 PRO A 82 -155.30 -59.18 REMARK 500 2 HIS B 460 -74.58 -59.89 REMARK 500 2 SER B 462 -59.13 -136.41 REMARK 500 2 TYR B 465 -176.24 60.73 REMARK 500 2 LEU B 468 -41.75 -177.27 REMARK 500 2 ASP B 481 92.10 44.71 REMARK 500 2 ALA B 482 30.56 -147.22 REMARK 500 2 LEU B 483 -70.78 -99.84 REMARK 500 2 ILE B 485 99.76 -59.69 REMARK 500 3 SER A 23 -70.92 -43.80 REMARK 500 3 PRO A 24 -93.98 -74.57 REMARK 500 3 ALA A 25 156.88 177.69 REMARK 500 3 ASP A 33 46.62 178.87 REMARK 500 3 LYS A 57 -170.67 -55.98 REMARK 500 3 MET A 58 72.10 -171.63 REMARK 500 3 LYS A 65 143.91 38.10 REMARK 500 3 VAL A 66 -143.57 -130.71 REMARK 500 REMARK 500 THIS ENTRY HAS 399 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2K2U A 1 115 UNP P32776 TFB1_YEAST 1 115 DBREF 2K2U B 456 490 UNP P04486 ATIN_HHV1F 445 479 SEQADV 2K2U PRO A 1 UNP P32776 MET 1 ENGINEERED MUTATION SEQRES 1 A 115 PRO SER HIS SER GLY ALA ALA ILE PHE GLU LYS VAL SER SEQRES 2 A 115 GLY ILE ILE ALA ILE ASN GLU ASP VAL SER PRO ALA GLU SEQRES 3 A 115 LEU THR TRP ARG SER THR ASP GLY ASP LYS VAL HIS THR SEQRES 4 A 115 VAL VAL LEU SER THR ILE ASP LYS LEU GLN ALA THR PRO SEQRES 5 A 115 ALA SER SER GLU LYS MET MET LEU ARG LEU ILE GLY LYS SEQRES 6 A 115 VAL ASP GLU SER LYS LYS ARG LYS ASP ASN GLU GLY ASN SEQRES 7 A 115 GLU VAL VAL PRO LYS PRO GLN ARG HIS MET PHE SER PHE SEQRES 8 A 115 ASN ASN ARG THR VAL MET ASP ASN ILE LYS MET THR LEU SEQRES 9 A 115 GLN GLN ILE ILE SER ARG TYR LYS ASP ALA ASP SEQRES 1 B 35 GLY PHE THR PRO HIS ASP SER ALA PRO TYR GLY ALA LEU SEQRES 2 B 35 ASP MET ALA ASP PHE GLU PHE GLU GLN MET PHE THR ASP SEQRES 3 B 35 ALA LEU GLY ILE ASP GLU TYR GLY GLY HELIX 1 1 ASN A 93 ASP A 115 1 23 HELIX 2 2 MET B 470 MET B 478 1 9 SHEET 1 A 4 SER A 4 GLY A 5 0 SHEET 2 A 4 GLY A 14 ASN A 19 -1 O ILE A 16 N GLY A 5 SHEET 3 A 4 GLU A 26 SER A 31 -1 O GLU A 26 N ASN A 19 SHEET 4 A 4 VAL A 37 VAL A 41 -1 O HIS A 38 N TRP A 29 SHEET 1 B 4 ALA A 7 PHE A 9 0 SHEET 2 B 4 HIS A 87 PHE A 91 -1 O SER A 90 N ILE A 8 SHEET 3 B 4 MET A 59 ILE A 63 -1 N LEU A 62 O HIS A 87 SHEET 4 B 4 LYS A 47 ALA A 50 -1 N GLN A 49 O ARG A 61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1