HEADER HYDROLASE 29-APR-08 2K3A TITLE NMR SOLUTION STRUCTURE OF STAPHYLOCOCCUS SAPROPHYTICUS CHAP (CYSTEINE, TITLE 2 HISTIDINE-DEPENDENT AMIDOHYDROLASES/PEPTIDASES) DOMAIN PROTEIN. TITLE 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SYR11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAP DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS SAPROPHYTICUS SUBSP. SOURCE 3 SAPROPHYTICUS ATCC 15305; SOURCE 4 ORGANISM_TAXID: 342451; SOURCE 5 STRAIN: ATCC 15305 / DSM 20229; SOURCE 6 GENE: SSP0609; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21; SOURCE 12 OTHER_DETAILS: SYR11-21.5 KEYWDS PROTEIN, MONOMER, CHAP DOMAIN, PUTATIVE AMIDASE, STRUCTURAL GENOMICS, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, HYDROLASE ANTIGEN, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.ROSSI,J.M.ARAMINI,C.X.CHEN,C.NWOSU,K.C.CUNNINGHAM,L.A.OWENS,R.XIAO, AUTHOR 2 J.LIU,M.C.BARAN,G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 16-MAR-22 2K3A 1 REMARK REVDAT 2 30-DEC-08 2K3A 1 JRNL VERSN REVDAT 1 13-MAY-08 2K3A 0 SPRSDE 13-MAY-08 2K3A 2JRN JRNL AUTH P.ROSSI,J.M.ARAMINI,R.XIAO,C.X.CHEN,C.NWOSU,L.A.OWENS, JRNL AUTH 2 M.MAGLAQUI,R.NAIR,M.FISCHER,T.B.ACTON,B.HONIG,B.ROST, JRNL AUTH 3 G.T.MONTELIONE JRNL TITL STRUCTURAL ELUCIDATION OF THE CYS-HIS-GLU-ASN PROTEOLYTIC JRNL TITL 2 RELAY IN THE SECRETED CHAP DOMAIN ENZYME FROM THE HUMAN JRNL TITL 3 PATHOGEN STAPHYLOCOCCUS SAPROPHYTICUS. JRNL REF PROTEINS V. 74 515 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18951393 JRNL DOI 10.1002/PROT.22267 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, X-PLOR NIH 2.11.2, CNS 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH), BRUNGER, ADAMS, REMARK 3 CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINED BY TRIPLE REMARK 3 RESONANCE NMR SPECTROSCOPY. NOESY ASSIGNMENTS MADE WITH REMARK 3 ITERATIVE METHOD USING CYANA-2.1 FOR SIMULATED ANNEALING AND REMARK 3 AUTOSTRUCTURE 2.1. LOWEST TARGET FUNCTION SELECTED. CONVERGED REMARK 3 STRUCTURES ARE FURTHER REFINED USING CNS IN EXPLICIT WATER SHELL REMARK 3 (NIELGES PROTOCOL WITH PARAM19). MONOMER UNDER NMR CONDITIONS. REMARK 3 TC = 7.0 +/- 0.1 NS (1D T1/T2). ASSIGNMENT STATS (EXCLUDING C- REMARK 3 TERM TAG): BACKBONE 98.1%, SIDECHAIN 92.0%, AROMATIC (SC) 92.45%, REMARK 3 VL METHYL STEREOSPECIFIC 88.23%, UNAMBIGUOS SIDECHAIN NH2 100%. REMARK 3 STRUCTURE BASED ON 1111 NOE, 70 H-BOND, 124 DIHEDRAL. 100 REMARK 3 STRUCTURES CALCULATED 20 LOWEST ENERGY SUBMITTED. MAX NOE REMARK 3 VIOLATION 0.34 A (1MODEL), MAX DIHEDRAL 3.60 DEG. STRUCTURE REMARK 3 QUALITY FACTOR PSVS 1.3: ORDERED RESIDUES RANGES - ALPHA HELIX REMARK 3 (57-64, 76-86, 143-146), B-STRAND (89-91, 150-153, 98-101, 110- REMARK 3 116, 122-127, 136-141) [S(PHI)+S(PSI)] > 1.8. RMSD 0.5 BB, 0.8 REMARK 3 ALL HEAVY ATOMS. RAMA: 92.4% MOST FAV, 7.6% ADDTL. ALL., 0.0 REMARK 3 GEN. ALL., 0.0% DISALL. PROCHECK (PSI-PHI): -0.30/-0.87 (RAW/Z), REMARK 3 PROCHECK (ALL): -0.20/-1.18 (RAW/Z), MOLPROBITY CLASH: 11.42/- REMARK 3 0.43 (RAW/Z) . RPF SCORES ALL ASSIGNED RESIDUES (FIT OF NOESY REMARK 3 PEAKLISTS TO STRUCTURE): RECALL: 0.925, PRECISION: 0.884, F- REMARK 3 MEASURE: 0.904, DP-SCORE: 0.763. REMARK 4 REMARK 4 2K3A COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000100621. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.66 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM MES, 100 MM DTT, REMARK 210 100 MM SODIUM CHLORIDE, 0.02 % REMARK 210 SODIUM AZIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 5 % D2O, 95% H2O/5% REMARK 210 D2O; 0.96 MM [5% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM MES, 100 MM DTT, REMARK 210 100 MM SODIUM CHLORIDE, 0.02 % REMARK 210 SODIUM AZIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 5 % D2O, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HNCACB; 3D HNCO; 3D HBHA(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D HCCH-COSY; REMARK 210 3D CCH-TOCSY; 3D HN(COCA)CB; 3D REMARK 210 HNCACO; T1/T2 RELAXATION; N15 REMARK 210 HET-NOE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY 3.113, REMARK 210 AUTOASSIGN 2.0, AUTOSTRUCTURE REMARK 210 2.1.1, CYANA 2.1, MOLMOL 2K2, REMARK 210 PSVS 1.3, PROCHECK, PROSA, REMARK 210 PDBSTAT, MOLPROBITY, VERIFY3D REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 -50.65 73.33 REMARK 500 1 HIS A 23 111.49 -162.12 REMARK 500 1 PRO A 35 90.96 -68.36 REMARK 500 1 GLN A 42 98.98 -52.55 REMARK 500 1 ASN A 50 106.40 -59.70 REMARK 500 1 THR A 103 -42.32 66.59 REMARK 500 1 TYR A 129 -55.74 71.38 REMARK 500 1 ASN A 130 93.60 -50.38 REMARK 500 1 SER A 135 83.17 -66.56 REMARK 500 2 VAL A 5 38.85 -87.29 REMARK 500 2 LEU A 21 122.91 -170.61 REMARK 500 2 HIS A 23 -4.25 66.64 REMARK 500 2 ASN A 37 30.83 -80.46 REMARK 500 2 SER A 47 13.07 51.93 REMARK 500 2 ALA A 49 -74.03 -74.61 REMARK 500 2 ASN A 50 90.32 -165.12 REMARK 500 2 LEU A 51 31.53 -85.43 REMARK 500 2 SER A 71 20.80 -72.65 REMARK 500 2 ALA A 104 58.41 -99.48 REMARK 500 2 PRO A 133 5.46 -64.41 REMARK 500 2 SER A 148 -3.00 83.56 REMARK 500 3 THR A 11 104.49 -164.53 REMARK 500 3 HIS A 23 99.61 -163.73 REMARK 500 3 GLN A 32 103.54 -53.77 REMARK 500 3 THR A 33 86.18 -68.14 REMARK 500 3 SER A 39 33.33 -75.16 REMARK 500 3 THR A 44 81.06 -66.36 REMARK 500 3 SER A 45 -48.01 -175.95 REMARK 500 3 ASN A 68 37.76 -81.01 REMARK 500 3 PRO A 94 20.29 -78.12 REMARK 500 3 TYR A 129 -168.53 -79.05 REMARK 500 3 ASN A 130 96.09 -62.64 REMARK 500 4 THR A 6 82.05 50.92 REMARK 500 4 THR A 8 95.99 -61.05 REMARK 500 4 ALA A 12 -30.62 -136.94 REMARK 500 4 ALA A 16 106.90 -162.70 REMARK 500 4 ASP A 22 -77.28 -101.87 REMARK 500 4 HIS A 23 -33.33 -179.63 REMARK 500 4 ASP A 28 -148.52 -79.94 REMARK 500 4 ALA A 29 92.62 -69.75 REMARK 500 4 PRO A 35 91.33 -54.42 REMARK 500 4 ASN A 37 -70.60 48.79 REMARK 500 4 GLN A 38 -65.07 72.68 REMARK 500 4 ASN A 68 36.19 -78.60 REMARK 500 4 ASN A 128 -71.49 -129.71 REMARK 500 4 ASN A 130 88.29 -68.99 REMARK 500 4 PHE A 134 -46.92 -135.78 REMARK 500 5 ASN A 25 -164.91 -110.79 REMARK 500 5 THR A 103 17.03 56.23 REMARK 500 6 LEU A 4 87.80 56.31 REMARK 500 REMARK 500 THIS ENTRY HAS 191 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SYR11 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15335 RELATED DB: BMRB DBREF 2K3A A 1 155 UNP Q49ZM2 Q49ZM2_STAS1 1 155 SEQRES 1 A 155 MET LYS LYS LEU VAL THR ALA THR THR LEU THR ALA GLY SEQRES 2 A 155 ILE GLY ALA ALA ILE VAL GLY LEU ASP HIS GLY ASN GLU SEQRES 3 A 155 ALA ASP ALA ALA GLU GLN THR GLN PRO THR ASN GLN SER SEQRES 4 A 155 THR THR GLN SER THR SER GLY SER SER ALA ASN LEU TYR SEQRES 5 A 155 THR ALA GLY GLN CYS THR TRP TYR VAL TYR ASP LYS VAL SEQRES 6 A 155 GLY GLY ASN ILE GLY SER THR TRP GLY ASN ALA ASN ASN SEQRES 7 A 155 TRP ALA SER ALA ALA SER SER ALA GLY TYR THR VAL ASN SEQRES 8 A 155 ASN SER PRO GLU ALA GLY SER ILE LEU GLN SER THR ALA SEQRES 9 A 155 GLY GLY TYR GLY HIS VAL ALA TYR VAL GLU ASN VAL ASN SEQRES 10 A 155 SER ASP GLY SER VAL GLU VAL SER GLU MET ASN TYR ASN SEQRES 11 A 155 GLY GLY PRO PHE SER VAL SER GLU ARG THR ILE SER ALA SEQRES 12 A 155 GLY GLU ALA SER SER TYR ASN TYR ILE HIS LEU ASN HELIX 1 1 GLN A 56 VAL A 65 1 10 HELIX 2 2 GLY A 70 GLY A 74 5 5 HELIX 3 3 ASN A 75 GLY A 87 1 13 HELIX 4 4 SER A 142 SER A 147 1 6 SHEET 1 A 6 THR A 89 ASN A 91 0 SHEET 2 A 6 ASN A 150 HIS A 153 -1 O HIS A 153 N THR A 89 SHEET 3 A 6 SER A 98 GLN A 101 -1 N ILE A 99 O ILE A 152 SHEET 4 A 6 VAL A 110 VAL A 116 -1 O VAL A 113 N SER A 98 SHEET 5 A 6 VAL A 122 MET A 127 -1 O SER A 125 N TYR A 112 SHEET 6 A 6 VAL A 136 ILE A 141 -1 O ARG A 139 N VAL A 124 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1