HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 08-MAY-08 2K3I TITLE SOLUTION NMR STRUCTURE OF PROTEIN YIIS FROM SHIGELLA FLEXNERI. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SFR90 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YIIS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI 2A; SOURCE 3 ORGANISM_TAXID: 42897; SOURCE 4 STRAIN: SEROTYPE 2A; SOURCE 5 GENE: YIIS, S3747, SF4000; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS GFT NMR, PROTEIN STRUCTURE, PSI, NESG, STRUCTURAL GENOMICS, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.L.MILLS,K.K.SINGARAPU,A.ELETSKY,D.K.SUKUMARAN,D.WANG,M.JIANG, AUTHOR 2 C.CICCOSANTI,R.XIAO,J.LIU,M.C.BARAN,G.V.T.SWAPNA,T.ACTON,B.ROST, AUTHOR 3 G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG) REVDAT 7 14-JUN-23 2K3I 1 REMARK REVDAT 6 19-FEB-20 2K3I 1 REMARK SEQADV REVDAT 5 02-APR-14 2K3I 1 SOURCE REVDAT 4 07-MAR-12 2K3I 1 AUTHOR VERSN REVDAT 3 09-FEB-10 2K3I 1 JRNL REVDAT 2 24-FEB-09 2K3I 1 VERSN REVDAT 1 08-JUL-08 2K3I 0 JRNL AUTH K.K.SINGARAPU,J.L.MILLS,R.XIAO,T.ACTON,M.PUNTA,M.FISCHER, JRNL AUTH 2 B.HONIG,B.ROST,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURES OF PROTEINS VPA0419 FROM VIBRIO JRNL TITL 2 PARAHAEMOLYTICUS AND YIIS FROM SHIGELLA FLEXNERI PROVIDE JRNL TITL 3 STRUCTURAL COVERAGE FOR PROTEIN DOMAIN FAMILY PFAM 04175. JRNL REF PROTEINS V. 78 779 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 19927321 JRNL DOI 10.1002/PROT.22630 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K3I COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000100629. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-100% 13C; U-100% 15N] REMARK 210 SFR90, 50 UM DSS, 90% H2O/10% REMARK 210 D2O; 1.02 MM [U-5% 13C; U-100% REMARK 210 15N] SFR90, 50 UM DSS, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 4,3 D GFT HNNACBCA; 4,3 REMARK 210 D GFT CABCACONHN; 4,3D REMARK 210 HABCABCONHN; 4,3D GFT HCCH COSY; REMARK 210 3D HCCH-COSY; 3D SIMNOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, XEASY, NMRPIPE, VNMRJ, REMARK 210 AUTOASSIGN, AUTOSTRUCTURE, PSVS, REMARK 210 TALOS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 9 91.17 -163.31 REMARK 500 1 ASP A 26 -48.80 179.22 REMARK 500 1 SER A 58 -84.22 -71.71 REMARK 500 1 ALA A 59 -164.97 54.16 REMARK 500 1 LEU A 102 -59.41 65.74 REMARK 500 1 HIS A 104 53.54 -116.44 REMARK 500 1 HIS A 105 -81.80 66.80 REMARK 500 1 HIS A 106 -84.02 -177.08 REMARK 500 2 ASP A 24 -163.20 -111.69 REMARK 500 2 ASN A 25 40.71 -167.56 REMARK 500 2 ASN A 27 161.73 71.95 REMARK 500 2 ALA A 37 -70.50 -76.42 REMARK 500 2 ASP A 60 -87.41 -177.10 REMARK 500 2 GLU A 61 7.32 -161.44 REMARK 500 2 LEU A 100 -62.08 -121.29 REMARK 500 2 GLU A 103 -77.88 60.39 REMARK 500 3 ALA A 2 50.14 -178.93 REMARK 500 3 LYS A 9 88.56 -166.50 REMARK 500 3 ALA A 16 22.77 -141.27 REMARK 500 3 ILE A 17 110.57 73.74 REMARK 500 3 VAL A 22 86.46 62.01 REMARK 500 3 ASP A 26 -75.07 -166.38 REMARK 500 3 ASP A 60 -26.02 70.32 REMARK 500 3 SER A 64 97.93 -65.55 REMARK 500 3 SER A 85 -33.42 74.98 REMARK 500 3 HIS A 104 79.76 -107.19 REMARK 500 3 HIS A 107 -89.64 -87.78 REMARK 500 4 MET A 3 94.78 60.86 REMARK 500 4 THR A 12 89.21 -68.99 REMARK 500 4 ILE A 19 -59.35 -133.72 REMARK 500 4 THR A 21 112.18 69.79 REMARK 500 4 ASP A 26 -75.45 -148.64 REMARK 500 4 ALA A 59 38.19 -89.85 REMARK 500 4 ASP A 60 -74.29 66.11 REMARK 500 4 LEU A 102 72.23 -103.84 REMARK 500 5 LYS A 9 84.68 -167.49 REMARK 500 5 ASN A 25 85.63 68.87 REMARK 500 5 ASP A 26 -149.99 -97.64 REMARK 500 5 SER A 58 -63.85 69.11 REMARK 500 5 ALA A 59 -82.55 58.34 REMARK 500 5 ASP A 60 -58.24 -160.30 REMARK 500 5 HIS A 107 107.80 -49.80 REMARK 500 6 MET A 3 78.57 -118.58 REMARK 500 6 SER A 11 100.94 -171.94 REMARK 500 6 ALA A 16 25.66 -143.39 REMARK 500 6 ILE A 23 -98.14 -94.88 REMARK 500 6 ASP A 24 -96.63 -150.75 REMARK 500 6 ASP A 26 -163.47 -116.17 REMARK 500 6 CYS A 28 15.94 163.22 REMARK 500 6 ASP A 60 -69.66 71.17 REMARK 500 REMARK 500 THIS ENTRY HAS 187 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15762 RELATED DB: BMRB REMARK 900 RELATED ID: SFR90 RELATED DB: TARGETDB DBREF 2K3I A 3 101 UNP Q83IT9 Q83IT9_SHIFL 1 99 SEQADV 2K3I MET A 1 UNP Q83IT9 EXPRESSION TAG SEQADV 2K3I ALA A 2 UNP Q83IT9 EXPRESSION TAG SEQADV 2K3I LEU A 102 UNP Q83IT9 EXPRESSION TAG SEQADV 2K3I GLU A 103 UNP Q83IT9 EXPRESSION TAG SEQADV 2K3I HIS A 104 UNP Q83IT9 EXPRESSION TAG SEQADV 2K3I HIS A 105 UNP Q83IT9 EXPRESSION TAG SEQADV 2K3I HIS A 106 UNP Q83IT9 EXPRESSION TAG SEQADV 2K3I HIS A 107 UNP Q83IT9 EXPRESSION TAG SEQADV 2K3I HIS A 108 UNP Q83IT9 EXPRESSION TAG SEQADV 2K3I HIS A 109 UNP Q83IT9 EXPRESSION TAG SEQRES 1 A 109 MET ALA MET LYS ASP VAL VAL ASP LYS CYS SER THR LYS SEQRES 2 A 109 GLY CYS ALA ILE ASP ILE GLY THR VAL ILE ASP ASN ASP SEQRES 3 A 109 ASN CYS THR SER LYS PHE SER ARG PHE PHE ALA THR ARG SEQRES 4 A 109 GLU GLU ALA GLU SER PHE MET THR LYS LEU LYS GLU LEU SEQRES 5 A 109 ALA ALA ALA ALA SER SER ALA ASP GLU GLY ALA SER VAL SEQRES 6 A 109 ALA TYR LYS ILE LYS ASP LEU GLU GLY GLN VAL GLU LEU SEQRES 7 A 109 ASP ALA ALA PHE THR PHE SER CYS GLN ALA GLU MET ILE SEQRES 8 A 109 ILE PHE GLU LEU SER LEU ARG SER LEU ALA LEU GLU HIS SEQRES 9 A 109 HIS HIS HIS HIS HIS HELIX 1 1 THR A 38 SER A 57 1 20 HELIX 2 2 CYS A 86 ALA A 101 1 16 SHEET 1 A 3 THR A 29 PHE A 36 0 SHEET 2 A 3 VAL A 76 THR A 83 -1 O PHE A 82 N SER A 30 SHEET 3 A 3 SER A 64 ASP A 71 -1 N ALA A 66 O ALA A 81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1