HEADER STRUCTURAL PROTEIN 15-MAY-08 2K3P TITLE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN (TUSP1-C) OF THE EGG CASE TITLE 2 SILK FROM NEPHILA ANTIPODIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUSP1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN RESIDUES 305-465; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEPHILA ANTIPODIANA; SOURCE 3 ORGANISM_TAXID: 171624; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET32A-DERIVED KEYWDS EGGCASE SILK, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Z.LIN,W.HUANG,J.FAN,D.YANG REVDAT 4 29-MAY-24 2K3P 1 REMARK REVDAT 3 16-MAR-22 2K3P 1 REMARK REVDAT 2 23-JUN-09 2K3P 1 JRNL REVDAT 1 02-JUN-09 2K3P 0 JRNL AUTH Z.LIN,W.HUANG,J.ZHANG,J.S.FAN,D.YANG JRNL TITL SOLUTION STRUCTURE OF EGGCASE SILK PROTEIN AND ITS JRNL TITL 2 IMPLICATIONS FOR SILK FIBER FORMATION JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 8906 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19458259 JRNL DOI 10.1073/PNAS.0813255106 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, AND KOLLM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000100636. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 5 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-99% 13C; U-99% 15N] REMARK 210 TUSP1-C, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HN(CO)CA; 3D CCH REMARK 210 -TOCSY; 2D 1H-15N HSQC; 2D 1H- REMARK 210 13C HSQC; 4D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DPX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 5 24.11 45.77 REMARK 500 1 VAL A 7 6.31 56.78 REMARK 500 1 ALA A 22 40.81 -104.09 REMARK 500 1 ILE A 24 9.60 -67.93 REMARK 500 1 VAL A 26 94.59 -52.14 REMARK 500 1 LEU A 32 55.39 -152.24 REMARK 500 1 ARG A 33 49.53 -69.77 REMARK 500 1 PRO A 35 10.03 -69.97 REMARK 500 1 SER A 37 44.55 -75.50 REMARK 500 1 ILE A 39 -78.54 55.49 REMARK 500 1 PRO A 42 43.55 -74.68 REMARK 500 1 SER A 43 84.40 -52.64 REMARK 500 1 ASN A 44 46.20 39.18 REMARK 500 1 ALA A 45 -90.31 -126.44 REMARK 500 1 SER A 61 34.60 -90.73 REMARK 500 1 SER A 62 60.64 60.13 REMARK 500 1 SER A 63 167.17 73.53 REMARK 500 1 SER A 66 34.97 -67.01 REMARK 500 1 SER A 67 -45.67 -149.14 REMARK 500 1 SER A 86 -151.53 -92.69 REMARK 500 1 LEU A 92 -62.10 -147.36 REMARK 500 1 ARG A 109 -39.28 61.09 REMARK 500 1 SER A 111 25.18 48.57 REMARK 500 1 SER A 113 -64.04 25.35 REMARK 500 1 THR A 117 -54.93 -129.90 REMARK 500 1 ALA A 138 76.37 32.95 REMARK 500 1 GLN A 139 40.15 -75.10 REMARK 500 1 ILE A 140 -39.17 64.61 REMARK 500 1 SER A 146 -136.50 44.11 REMARK 500 1 VAL A 148 -54.72 167.72 REMARK 500 1 VAL A 151 29.31 48.66 REMARK 500 1 ASN A 152 -45.95 -132.14 REMARK 500 2 VAL A 7 44.06 -81.58 REMARK 500 2 PHE A 11 69.00 -156.21 REMARK 500 2 ARG A 13 -60.83 -142.18 REMARK 500 2 ILE A 14 83.23 31.37 REMARK 500 2 VAL A 17 -43.42 -133.26 REMARK 500 2 THR A 21 49.38 -70.66 REMARK 500 2 LEU A 32 129.51 58.65 REMARK 500 2 ALA A 41 119.05 -39.02 REMARK 500 2 SER A 43 -47.37 61.67 REMARK 500 2 ASN A 44 42.42 -76.09 REMARK 500 2 ALA A 45 -43.73 -134.07 REMARK 500 2 SER A 61 22.11 -73.44 REMARK 500 2 SER A 63 158.73 79.65 REMARK 500 2 SER A 86 -39.03 -136.41 REMARK 500 2 SER A 88 -165.22 75.31 REMARK 500 2 SER A 111 -167.59 51.00 REMARK 500 2 SER A 113 -32.56 -146.33 REMARK 500 2 ASP A 115 40.72 -73.10 REMARK 500 REMARK 500 THIS ENTRY HAS 299 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2K3Q RELATED DB: PDB DBREF 2K3P A 1 161 UNP Q1I128 Q1I128_9ARAC 305 465 SEQRES 1 A 161 SER GLY ASN TYR LEU GLY VAL SER GLN ASN PHE GLY ARG SEQRES 2 A 161 ILE ALA PRO VAL THR GLY GLY THR ALA GLY ILE SER VAL SEQRES 3 A 161 GLY VAL PRO GLY TYR LEU ARG THR PRO SER SER THR ILE SEQRES 4 A 161 LEU ALA PRO SER ASN ALA GLN ILE ILE SER LEU GLY LEU SEQRES 5 A 161 GLN THR THR LEU ALA PRO VAL LEU SER SER SER GLY LEU SEQRES 6 A 161 SER SER ALA SER ALA SER ALA ARG VAL SER SER LEU ALA SEQRES 7 A 161 GLN SER LEU ALA SER ALA LEU SER THR SER ARG GLY THR SEQRES 8 A 161 LEU SER LEU SER THR PHE LEU ASN LEU LEU SER SER ILE SEQRES 9 A 161 SER SER GLU ILE ARG ALA SER THR SER LEU ASP GLY THR SEQRES 10 A 161 GLN ALA THR VAL GLU VAL LEU LEU GLU ALA LEU ALA ALA SEQRES 11 A 161 LEU LEU GLN VAL ILE ASN GLY ALA GLN ILE THR ASP VAL SEQRES 12 A 161 ASN VAL SER SER VAL PRO SER VAL ASN ALA ALA LEU VAL SEQRES 13 A 161 SER ALA LEU VAL ALA HELIX 1 1 ASN A 3 ILE A 14 5 12 HELIX 2 2 ILE A 48 SER A 61 1 14 HELIX 3 3 SER A 67 SER A 86 1 20 HELIX 4 4 SER A 95 ARG A 109 1 15 HELIX 5 5 THR A 117 ASN A 136 1 20 HELIX 6 6 ASN A 152 VAL A 160 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1